Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08030

Experiment: 2-pentyl-furan 2.671 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS08020 and AZOBR_RS08025 are separated by 37 nucleotidesAZOBR_RS08025 and AZOBR_RS08030 are separated by 258 nucleotidesAZOBR_RS08030 and AZOBR_RS08035 are separated by 47 nucleotides AZOBR_RS08020: AZOBR_RS08020 - D-alanine dehydrogenase (EC 1.4.99.-) (from data), at 1,691,817 to 1,693,127 _RS08020 AZOBR_RS08025: AZOBR_RS08025 - hypothetical protein, at 1,693,165 to 1,693,800 _RS08025 AZOBR_RS08030: AZOBR_RS08030 - glutamine amidotransferase, at 1,694,059 to 1,694,631 _RS08030 AZOBR_RS08035: AZOBR_RS08035 - regulator, at 1,694,679 to 1,695,341 _RS08035 Position (kb) 1694 1695Strain fitness (log2 ratio) -2 -1 0 1at 1693.166 kb on + strandat 1693.328 kb on + strand, within AZOBR_RS08025at 1693.524 kb on + strand, within AZOBR_RS08025at 1693.524 kb on + strand, within AZOBR_RS08025at 1693.524 kb on + strand, within AZOBR_RS08025at 1693.778 kb on + strandat 1693.922 kb on + strandat 1693.922 kb on + strandat 1694.016 kb on - strandat 1694.966 kb on - strand, within AZOBR_RS08035at 1694.966 kb on - strand, within AZOBR_RS08035at 1694.966 kb on - strand, within AZOBR_RS08035at 1695.037 kb on + strand, within AZOBR_RS08035at 1695.432 kb on + strandat 1695.477 kb on + strandat 1695.478 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
remove
1,693,166 + -0.6
1,693,328 + AZOBR_RS08025 0.26 +0.2
1,693,524 + AZOBR_RS08025 0.56 +0.5
1,693,524 + AZOBR_RS08025 0.56 -0.4
1,693,524 + AZOBR_RS08025 0.56 +1.0
1,693,778 + -0.3
1,693,922 + -0.2
1,693,922 + -0.7
1,694,016 - -0.2
1,694,966 - AZOBR_RS08035 0.43 +1.7
1,694,966 - AZOBR_RS08035 0.43 -0.1
1,694,966 - AZOBR_RS08035 0.43 -1.6
1,695,037 + AZOBR_RS08035 0.54 +0.8
1,695,432 + +0.6
1,695,477 + -1.3
1,695,478 - -1.8

Or see this region's nucleotide sequence