Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07770

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07765 and AZOBR_RS07770 are separated by 18 nucleotidesAZOBR_RS07770 and AZOBR_RS07775 overlap by 4 nucleotides AZOBR_RS07765: AZOBR_RS07765 - O-acetylhomoserine aminocarboxypropyltransferase, at 1,638,077 to 1,639,366 _RS07765 AZOBR_RS07770: AZOBR_RS07770 - CoA-binding protein, at 1,639,385 to 1,639,903 _RS07770 AZOBR_RS07775: AZOBR_RS07775 - enoyl-CoA hydratase, at 1,639,900 to 1,640,706 _RS07775 Position (kb) 1639 1640Strain fitness (log2 ratio) -2 -1 0 1 2at 1638.403 kb on - strand, within AZOBR_RS07765at 1638.789 kb on + strand, within AZOBR_RS07765at 1638.789 kb on + strand, within AZOBR_RS07765at 1638.790 kb on - strand, within AZOBR_RS07765at 1639.030 kb on - strand, within AZOBR_RS07765at 1639.194 kb on + strand, within AZOBR_RS07765at 1639.194 kb on + strand, within AZOBR_RS07765at 1639.194 kb on + strand, within AZOBR_RS07765at 1639.195 kb on - strand, within AZOBR_RS07765at 1639.272 kb on + strandat 1639.273 kb on - strandat 1639.273 kb on - strandat 1639.386 kb on + strandat 1639.387 kb on - strandat 1639.770 kb on + strand, within AZOBR_RS07770at 1639.770 kb on + strand, within AZOBR_RS07770at 1639.771 kb on - strand, within AZOBR_RS07770at 1639.771 kb on - strand, within AZOBR_RS07770at 1639.872 kb on + strandat 1639.872 kb on + strandat 1639.873 kb on - strandat 1640.000 kb on + strand, within AZOBR_RS07775at 1640.001 kb on - strand, within AZOBR_RS07775at 1640.006 kb on + strand, within AZOBR_RS07775at 1640.007 kb on - strand, within AZOBR_RS07775at 1640.007 kb on - strand, within AZOBR_RS07775at 1640.312 kb on + strand, within AZOBR_RS07775at 1640.313 kb on - strand, within AZOBR_RS07775at 1640.444 kb on + strand, within AZOBR_RS07775at 1640.799 kb on - strandat 1640.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,638,403 - AZOBR_RS07765 0.25 +0.6
1,638,789 + AZOBR_RS07765 0.55 -0.2
1,638,789 + AZOBR_RS07765 0.55 -2.1
1,638,790 - AZOBR_RS07765 0.55 +0.4
1,639,030 - AZOBR_RS07765 0.74 +1.0
1,639,194 + AZOBR_RS07765 0.87 -0.3
1,639,194 + AZOBR_RS07765 0.87 +2.1
1,639,194 + AZOBR_RS07765 0.87 -0.4
1,639,195 - AZOBR_RS07765 0.87 -0.8
1,639,272 + -2.1
1,639,273 - -0.1
1,639,273 - -0.6
1,639,386 + +0.5
1,639,387 - +0.0
1,639,770 + AZOBR_RS07770 0.74 +1.8
1,639,770 + AZOBR_RS07770 0.74 -0.1
1,639,771 - AZOBR_RS07770 0.74 +0.5
1,639,771 - AZOBR_RS07770 0.74 +1.0
1,639,872 + -0.4
1,639,872 + +0.1
1,639,873 - +0.0
1,640,000 + AZOBR_RS07775 0.12 +1.0
1,640,001 - AZOBR_RS07775 0.13 +0.4
1,640,006 + AZOBR_RS07775 0.13 -0.1
1,640,007 - AZOBR_RS07775 0.13 +0.1
1,640,007 - AZOBR_RS07775 0.13 -0.3
1,640,312 + AZOBR_RS07775 0.51 -0.2
1,640,313 - AZOBR_RS07775 0.51 +1.0
1,640,444 + AZOBR_RS07775 0.67 +0.2
1,640,799 - -0.9
1,640,799 - +0.2

Or see this region's nucleotide sequence