Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07595

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07590 and AZOBR_RS07595 are separated by 318 nucleotidesAZOBR_RS07595 and AZOBR_RS07600 are separated by 55 nucleotides AZOBR_RS07590: AZOBR_RS07590 - histidine ammonia-lyase, at 1,595,827 to 1,597,308 _RS07590 AZOBR_RS07595: AZOBR_RS07595 - ABC transporter ATP-binding protein, at 1,597,627 to 1,599,243 _RS07595 AZOBR_RS07600: AZOBR_RS07600 - type I secretion membrane fusion protein HlyD, at 1,599,299 to 1,600,660 _RS07600 Position (kb) 1597 1598 1599 1600Strain fitness (log2 ratio) -3 -2 -1 0 1at 1596.926 kb on + strand, within AZOBR_RS07590at 1596.926 kb on + strand, within AZOBR_RS07590at 1596.927 kb on - strand, within AZOBR_RS07590at 1597.145 kb on + strand, within AZOBR_RS07590at 1597.146 kb on - strand, within AZOBR_RS07590at 1597.951 kb on + strand, within AZOBR_RS07595at 1597.951 kb on + strand, within AZOBR_RS07595at 1597.952 kb on - strand, within AZOBR_RS07595at 1597.966 kb on + strand, within AZOBR_RS07595at 1597.966 kb on + strand, within AZOBR_RS07595at 1597.967 kb on - strand, within AZOBR_RS07595at 1597.967 kb on - strand, within AZOBR_RS07595at 1597.967 kb on - strand, within AZOBR_RS07595at 1598.032 kb on + strand, within AZOBR_RS07595at 1598.032 kb on + strand, within AZOBR_RS07595at 1598.419 kb on + strand, within AZOBR_RS07595at 1598.419 kb on + strand, within AZOBR_RS07595at 1598.420 kb on - strand, within AZOBR_RS07595at 1598.743 kb on + strand, within AZOBR_RS07595at 1598.744 kb on - strand, within AZOBR_RS07595at 1598.744 kb on - strand, within AZOBR_RS07595at 1598.744 kb on - strand, within AZOBR_RS07595at 1598.885 kb on - strand, within AZOBR_RS07595at 1598.962 kb on + strand, within AZOBR_RS07595at 1599.298 kb on + strandat 1599.323 kb on + strandat 1599.324 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,596,926 + AZOBR_RS07590 0.74 +0.4
1,596,926 + AZOBR_RS07590 0.74 +0.0
1,596,927 - AZOBR_RS07590 0.74 -0.4
1,597,145 + AZOBR_RS07590 0.89 -1.3
1,597,146 - AZOBR_RS07590 0.89 -0.2
1,597,951 + AZOBR_RS07595 0.20 -0.6
1,597,951 + AZOBR_RS07595 0.20 -2.7
1,597,952 - AZOBR_RS07595 0.20 +1.4
1,597,966 + AZOBR_RS07595 0.21 +0.8
1,597,966 + AZOBR_RS07595 0.21 +0.5
1,597,967 - AZOBR_RS07595 0.21 -0.1
1,597,967 - AZOBR_RS07595 0.21 -0.4
1,597,967 - AZOBR_RS07595 0.21 -0.1
1,598,032 + AZOBR_RS07595 0.25 -0.3
1,598,032 + AZOBR_RS07595 0.25 +0.4
1,598,419 + AZOBR_RS07595 0.49 +1.2
1,598,419 + AZOBR_RS07595 0.49 +1.7
1,598,420 - AZOBR_RS07595 0.49 -0.4
1,598,743 + AZOBR_RS07595 0.69 -0.3
1,598,744 - AZOBR_RS07595 0.69 -0.4
1,598,744 - AZOBR_RS07595 0.69 -0.2
1,598,744 - AZOBR_RS07595 0.69 -1.9
1,598,885 - AZOBR_RS07595 0.78 +0.9
1,598,962 + AZOBR_RS07595 0.83 +0.5
1,599,298 + -0.1
1,599,323 + +0.2
1,599,324 - -3.5

Or see this region's nucleotide sequence