Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07580

Experiment: 2-pentyl-furan 2.671 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07580 and AZOBR_RS07585 are separated by 270 nucleotidesAZOBR_RS07585 and AZOBR_RS07590 are separated by 155 nucleotides AZOBR_RS07580: AZOBR_RS07580 - membrane protein, at 1,594,646 to 1,594,870 _RS07580 AZOBR_RS07585: AZOBR_RS07585 - peroxiredoxin, at 1,595,141 to 1,595,671 _RS07585 AZOBR_RS07590: AZOBR_RS07590 - histidine ammonia-lyase, at 1,595,827 to 1,597,308 _RS07590 Position (kb) 1594 1595Strain fitness (log2 ratio) -2 -1 0 1 2at 1593.664 kb on - strandat 1593.664 kb on - strandat 1593.765 kb on - strandat 1593.882 kb on + strandat 1593.883 kb on - strandat 1594.023 kb on + strandat 1594.023 kb on + strandat 1594.195 kb on - strandat 1594.195 kb on - strandat 1594.543 kb on + strandat 1594.704 kb on - strand, within AZOBR_RS07580at 1594.704 kb on - strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.775 kb on + strand, within AZOBR_RS07580at 1594.886 kb on + strandat 1594.886 kb on + strandat 1594.886 kb on + strandat 1594.887 kb on - strandat 1595.436 kb on + strand, within AZOBR_RS07585at 1595.436 kb on + strand, within AZOBR_RS07585at 1595.436 kb on + strand, within AZOBR_RS07585at 1595.437 kb on - strand, within AZOBR_RS07585at 1595.437 kb on - strand, within AZOBR_RS07585at 1595.437 kb on - strand, within AZOBR_RS07585at 1595.472 kb on + strand, within AZOBR_RS07585at 1595.705 kb on + strandat 1595.705 kb on + strandat 1595.723 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
remove
1,593,664 - -2.5
1,593,664 - -0.3
1,593,765 - +2.0
1,593,882 + -0.1
1,593,883 - +0.9
1,594,023 + +1.8
1,594,023 + +1.3
1,594,195 - +0.5
1,594,195 - -0.6
1,594,543 + -0.1
1,594,704 - AZOBR_RS07580 0.26 +0.1
1,594,704 - AZOBR_RS07580 0.26 -1.4
1,594,775 + AZOBR_RS07580 0.57 +0.0
1,594,775 + AZOBR_RS07580 0.57 +0.2
1,594,775 + AZOBR_RS07580 0.57 -0.5
1,594,775 + AZOBR_RS07580 0.57 -0.1
1,594,775 + AZOBR_RS07580 0.57 -0.4
1,594,775 + AZOBR_RS07580 0.57 +0.1
1,594,775 + AZOBR_RS07580 0.57 +0.4
1,594,886 + -1.3
1,594,886 + -0.6
1,594,886 + -1.6
1,594,887 - -0.8
1,595,436 + AZOBR_RS07585 0.56 -0.7
1,595,436 + AZOBR_RS07585 0.56 -2.1
1,595,436 + AZOBR_RS07585 0.56 -0.8
1,595,437 - AZOBR_RS07585 0.56 -0.3
1,595,437 - AZOBR_RS07585 0.56 -1.7
1,595,437 - AZOBR_RS07585 0.56 -0.1
1,595,472 + AZOBR_RS07585 0.62 +0.7
1,595,705 + +0.2
1,595,705 + -2.1
1,595,723 - +0.2

Or see this region's nucleotide sequence