Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07495

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07490 and AZOBR_RS07495 are separated by 24 nucleotides AZOBR_RS07490: AZOBR_RS07490 - anthranilate synthase subunit I, at 1,575,186 to 1,576,697 _RS07490 AZOBR_RS07495: AZOBR_RS07495 - peptidylprolyl isomerase, at 1,576,722 to 1,578,608 _RS07495 Position (kb) 1576 1577 1578 1579Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1575.965 kb on - strand, within AZOBR_RS07490at 1575.965 kb on - strand, within AZOBR_RS07490at 1575.995 kb on - strand, within AZOBR_RS07490at 1575.995 kb on - strand, within AZOBR_RS07490at 1575.995 kb on - strand, within AZOBR_RS07490at 1576.124 kb on - strand, within AZOBR_RS07490at 1576.297 kb on + strand, within AZOBR_RS07490at 1576.298 kb on - strand, within AZOBR_RS07490at 1576.414 kb on + strand, within AZOBR_RS07490at 1576.414 kb on + strand, within AZOBR_RS07490at 1576.414 kb on + strand, within AZOBR_RS07490at 1576.507 kb on + strand, within AZOBR_RS07490at 1576.588 kb on + strandat 1576.589 kb on - strandat 1576.589 kb on - strandat 1576.724 kb on - strandat 1576.724 kb on - strandat 1576.727 kb on + strandat 1576.728 kb on - strandat 1576.778 kb on - strandat 1577.236 kb on + strand, within AZOBR_RS07495at 1577.236 kb on + strand, within AZOBR_RS07495at 1577.236 kb on + strand, within AZOBR_RS07495at 1577.236 kb on + strand, within AZOBR_RS07495at 1577.236 kb on + strand, within AZOBR_RS07495at 1577.237 kb on - strand, within AZOBR_RS07495at 1577.237 kb on - strand, within AZOBR_RS07495at 1577.237 kb on - strand, within AZOBR_RS07495at 1577.237 kb on - strand, within AZOBR_RS07495at 1577.474 kb on - strand, within AZOBR_RS07495at 1577.840 kb on - strand, within AZOBR_RS07495at 1577.959 kb on + strand, within AZOBR_RS07495at 1578.157 kb on + strand, within AZOBR_RS07495at 1578.158 kb on - strand, within AZOBR_RS07495at 1578.586 kb on + strandat 1578.660 kb on + strandat 1578.660 kb on + strandat 1578.660 kb on + strandat 1578.661 kb on - strandat 1578.661 kb on - strandat 1578.661 kb on - strandat 1578.661 kb on - strandat 1578.661 kb on - strandat 1578.661 kb on - strandat 1578.661 kb on - strandat 1578.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,575,965 - AZOBR_RS07490 0.52 -0.4
1,575,965 - AZOBR_RS07490 0.52 +0.5
1,575,995 - AZOBR_RS07490 0.54 +1.2
1,575,995 - AZOBR_RS07490 0.54 -1.4
1,575,995 - AZOBR_RS07490 0.54 -0.1
1,576,124 - AZOBR_RS07490 0.62 +3.2
1,576,297 + AZOBR_RS07490 0.73 -1.6
1,576,298 - AZOBR_RS07490 0.74 -0.5
1,576,414 + AZOBR_RS07490 0.81 +0.0
1,576,414 + AZOBR_RS07490 0.81 -0.4
1,576,414 + AZOBR_RS07490 0.81 -0.3
1,576,507 + AZOBR_RS07490 0.87 -0.2
1,576,588 + -1.1
1,576,589 - +0.1
1,576,589 - -2.6
1,576,724 - +0.5
1,576,724 - -2.1
1,576,727 + -2.9
1,576,728 - -3.5
1,576,778 - +1.2
1,577,236 + AZOBR_RS07495 0.27 -0.4
1,577,236 + AZOBR_RS07495 0.27 +0.2
1,577,236 + AZOBR_RS07495 0.27 +0.6
1,577,236 + AZOBR_RS07495 0.27 +2.2
1,577,236 + AZOBR_RS07495 0.27 +0.6
1,577,237 - AZOBR_RS07495 0.27 +2.2
1,577,237 - AZOBR_RS07495 0.27 +1.2
1,577,237 - AZOBR_RS07495 0.27 -0.1
1,577,237 - AZOBR_RS07495 0.27 +0.6
1,577,474 - AZOBR_RS07495 0.40 -1.6
1,577,840 - AZOBR_RS07495 0.59 -0.4
1,577,959 + AZOBR_RS07495 0.66 -0.1
1,578,157 + AZOBR_RS07495 0.76 +0.6
1,578,158 - AZOBR_RS07495 0.76 +0.6
1,578,586 + -0.4
1,578,660 + -0.1
1,578,660 + +3.6
1,578,660 + +1.2
1,578,661 - +0.2
1,578,661 - -1.8
1,578,661 - +0.2
1,578,661 - +0.2
1,578,661 - -0.7
1,578,661 - +0.2
1,578,661 - -0.8
1,578,758 - +3.5

Or see this region's nucleotide sequence