Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07335

Experiment: 2-pentyl-furan 2.671 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS07330 and AZOBR_RS07335 are separated by 3 nucleotidesAZOBR_RS07335 and AZOBR_RS07340 are separated by 4 nucleotidesAZOBR_RS07340 and AZOBR_RS07345 are separated by 10 nucleotides AZOBR_RS07330: AZOBR_RS07330 - uridylate kinase, at 1,545,906 to 1,546,661 _RS07330 AZOBR_RS07335: AZOBR_RS07335 - ribosome recycling factor, at 1,546,665 to 1,547,222 _RS07335 AZOBR_RS07340: AZOBR_RS07340 - UDP pyrophosphate synthase, at 1,547,227 to 1,547,964 _RS07340 AZOBR_RS07345: AZOBR_RS07345 - phosphatidate cytidylyltransferase, at 1,547,975 to 1,548,757 _RS07345 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -1 0 1at 1545.849 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
remove
1,545,849 + -0.1

Or see this region's nucleotide sequence