Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07055

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07050 and AZOBR_RS07055 are separated by 180 nucleotidesAZOBR_RS07055 and AZOBR_RS07060 are separated by 144 nucleotidesAZOBR_RS07060 and AZOBR_RS07065 are separated by 416 nucleotides AZOBR_RS07050: AZOBR_RS07050 - transcriptional regulator, at 1,491,933 to 1,493,327 _RS07050 AZOBR_RS07055: AZOBR_RS07055 - hypothetical protein, at 1,493,508 to 1,493,720 _RS07055 AZOBR_RS07060: AZOBR_RS07060 - hypothetical protein, at 1,493,865 to 1,494,188 _RS07060 AZOBR_RS07065: AZOBR_RS07065 - membrane protein, at 1,494,605 to 1,495,330 _RS07065 Position (kb) 1493 1494Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1492.612 kb on + strand, within AZOBR_RS07050at 1492.613 kb on - strand, within AZOBR_RS07050at 1492.735 kb on + strand, within AZOBR_RS07050at 1492.736 kb on - strand, within AZOBR_RS07050at 1492.736 kb on - strand, within AZOBR_RS07050at 1492.922 kb on - strand, within AZOBR_RS07050at 1493.539 kb on - strand, within AZOBR_RS07055at 1493.539 kb on - strand, within AZOBR_RS07055at 1493.539 kb on - strand, within AZOBR_RS07055at 1493.775 kb on + strandat 1493.776 kb on - strandat 1493.776 kb on - strandat 1493.827 kb on - strandat 1493.844 kb on - strandat 1493.972 kb on - strand, within AZOBR_RS07060at 1494.374 kb on + strandat 1494.374 kb on + strandat 1494.375 kb on - strandat 1494.375 kb on - strandat 1494.378 kb on - strandat 1494.378 kb on - strandat 1494.505 kb on + strandat 1494.506 kb on - strandat 1494.506 kb on - strandat 1494.506 kb on - strandat 1494.506 kb on - strandat 1494.506 kb on - strandat 1494.506 kb on - strandat 1494.506 kb on - strandat 1494.707 kb on + strand, within AZOBR_RS07065

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,492,612 + AZOBR_RS07050 0.49 +0.7
1,492,613 - AZOBR_RS07050 0.49 +2.8
1,492,735 + AZOBR_RS07050 0.57 -0.9
1,492,736 - AZOBR_RS07050 0.58 +2.2
1,492,736 - AZOBR_RS07050 0.58 +0.5
1,492,922 - AZOBR_RS07050 0.71 +1.0
1,493,539 - AZOBR_RS07055 0.15 +0.1
1,493,539 - AZOBR_RS07055 0.15 +0.2
1,493,539 - AZOBR_RS07055 0.15 -1.9
1,493,775 + +1.3
1,493,776 - +0.6
1,493,776 - +0.1
1,493,827 - +0.7
1,493,844 - +0.2
1,493,972 - AZOBR_RS07060 0.33 +0.5
1,494,374 + +1.1
1,494,374 + +0.6
1,494,375 - +0.2
1,494,375 - -1.1
1,494,378 - +0.1
1,494,378 - -0.2
1,494,505 + +0.4
1,494,506 - -1.4
1,494,506 - -2.4
1,494,506 - +1.0
1,494,506 - -0.9
1,494,506 - -0.6
1,494,506 - -1.3
1,494,506 - -1.6
1,494,707 + AZOBR_RS07065 0.14 +0.6

Or see this region's nucleotide sequence