Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06225

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06215 and AZOBR_RS06220 are separated by 308 nucleotidesAZOBR_RS06220 and AZOBR_RS06225 are separated by 138 nucleotidesAZOBR_RS06225 and AZOBR_RS06230 are separated by 611 nucleotides AZOBR_RS06215: AZOBR_RS06215 - hypothetical protein, at 1,315,972 to 1,316,178 _RS06215 AZOBR_RS06220: AZOBR_RS06220 - hypothetical protein, at 1,316,487 to 1,316,714 _RS06220 AZOBR_RS06225: AZOBR_RS06225 - hypothetical protein, at 1,316,853 to 1,317,311 _RS06225 AZOBR_RS06230: AZOBR_RS06230 - hypothetical protein, at 1,317,923 to 1,319,881 _RS06230 Position (kb) 1316 1317 1318Strain fitness (log2 ratio) -3 -2 -1 0 1at 1315.876 kb on + strandat 1315.877 kb on - strandat 1316.205 kb on + strandat 1316.488 kb on + strandat 1316.488 kb on + strandat 1317.229 kb on - strand, within AZOBR_RS06225at 1317.637 kb on + strandat 1317.638 kb on - strandat 1317.984 kb on - strandat 1317.984 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,315,876 + -1.3
1,315,877 - -2.2
1,316,205 + -3.3
1,316,488 + +1.0
1,316,488 + +0.3
1,317,229 - AZOBR_RS06225 0.82 +0.0
1,317,637 + -1.3
1,317,638 - -0.4
1,317,984 - -1.3
1,317,984 - +1.7

Or see this region's nucleotide sequence