Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06150

Experiment: 2-pentyl-furan 2.671 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS06140 and AZOBR_RS06145 are separated by 3 nucleotidesAZOBR_RS06145 and AZOBR_RS06150 are separated by 120 nucleotidesAZOBR_RS06150 and AZOBR_RS06155 are separated by 202 nucleotides AZOBR_RS06140: AZOBR_RS06140 - phosphoribosylaminoimidazole carboxylase, at 1,302,702 to 1,303,784 _RS06140 AZOBR_RS06145: AZOBR_RS06145 - N5-carboxyaminoimidazole ribonucleotide mutase, at 1,303,788 to 1,304,297 _RS06145 AZOBR_RS06150: AZOBR_RS06150 - small protein containing a coiled-coil domain containing protein, at 1,304,418 to 1,304,618 _RS06150 AZOBR_RS06155: AZOBR_RS06155 - 6-phosphofructokinase, at 1,304,821 to 1,305,906 _RS06155 Position (kb) 1304 1305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1304.327 kb on - strandat 1304.327 kb on - strandat 1304.441 kb on + strand, within AZOBR_RS06150at 1304.441 kb on + strand, within AZOBR_RS06150at 1304.442 kb on - strand, within AZOBR_RS06150at 1304.442 kb on - strand, within AZOBR_RS06150at 1304.618 kb on + strandat 1304.618 kb on + strandat 1304.652 kb on + strandat 1304.652 kb on + strandat 1304.706 kb on + strandat 1304.706 kb on + strandat 1304.709 kb on - strandat 1304.709 kb on - strandat 1304.727 kb on + strandat 1304.728 kb on - strandat 1304.730 kb on + strandat 1304.774 kb on + strandat 1304.780 kb on + strandat 1304.780 kb on + strandat 1304.781 kb on - strandat 1304.920 kb on + strandat 1304.920 kb on + strandat 1304.921 kb on - strandat 1304.983 kb on + strand, within AZOBR_RS06155at 1304.983 kb on + strand, within AZOBR_RS06155at 1305.595 kb on + strand, within AZOBR_RS06155at 1305.613 kb on + strand, within AZOBR_RS06155at 1305.614 kb on - strand, within AZOBR_RS06155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
remove
1,304,327 - +1.4
1,304,327 - -1.2
1,304,441 + AZOBR_RS06150 0.11 +1.1
1,304,441 + AZOBR_RS06150 0.11 +2.1
1,304,442 - AZOBR_RS06150 0.12 +0.6
1,304,442 - AZOBR_RS06150 0.12 -0.2
1,304,618 + +1.6
1,304,618 + +0.9
1,304,652 + -0.2
1,304,652 + -2.1
1,304,706 + -2.2
1,304,706 + -1.9
1,304,709 - +0.2
1,304,709 - +0.3
1,304,727 + -1.2
1,304,728 - -1.9
1,304,730 + -0.2
1,304,774 + -0.2
1,304,780 + -3.6
1,304,780 + -1.3
1,304,781 - +1.1
1,304,920 + +1.9
1,304,920 + +1.1
1,304,921 - -0.7
1,304,983 + AZOBR_RS06155 0.15 -1.4
1,304,983 + AZOBR_RS06155 0.15 -0.4
1,305,595 + AZOBR_RS06155 0.71 -0.2
1,305,613 + AZOBR_RS06155 0.73 -0.5
1,305,614 - AZOBR_RS06155 0.73 -1.3

Or see this region's nucleotide sequence