Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05050

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05045 and AZOBR_RS05050 are separated by 121 nucleotidesAZOBR_RS05050 and AZOBR_RS05055 are separated by 119 nucleotides AZOBR_RS05045: AZOBR_RS05045 - glucose-6-phosphate isomerase, at 1,069,429 to 1,071,072 _RS05045 AZOBR_RS05050: AZOBR_RS05050 - hypothetical protein, at 1,071,194 to 1,071,415 _RS05050 AZOBR_RS05055: AZOBR_RS05055 - zinc protease, at 1,071,535 to 1,072,899 _RS05055 Position (kb) 1071 1072Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1070.207 kb on + strandat 1070.208 kb on - strandat 1070.208 kb on - strandat 1070.658 kb on - strand, within AZOBR_RS05045at 1071.107 kb on + strandat 1071.107 kb on + strandat 1071.169 kb on + strandat 1071.170 kb on - strandat 1071.170 kb on - strandat 1071.183 kb on + strandat 1071.184 kb on - strandat 1071.408 kb on + strandat 1071.409 kb on - strandat 1071.424 kb on - strandat 1071.782 kb on + strand, within AZOBR_RS05055at 1071.782 kb on + strand, within AZOBR_RS05055at 1071.783 kb on - strand, within AZOBR_RS05055at 1071.783 kb on - strand, within AZOBR_RS05055at 1071.935 kb on + strand, within AZOBR_RS05055at 1071.935 kb on + strand, within AZOBR_RS05055at 1071.936 kb on - strand, within AZOBR_RS05055at 1071.936 kb on - strand, within AZOBR_RS05055at 1071.941 kb on + strand, within AZOBR_RS05055at 1071.942 kb on - strand, within AZOBR_RS05055at 1071.951 kb on - strand, within AZOBR_RS05055at 1072.019 kb on + strand, within AZOBR_RS05055at 1072.019 kb on + strand, within AZOBR_RS05055at 1072.019 kb on + strand, within AZOBR_RS05055at 1072.020 kb on - strand, within AZOBR_RS05055at 1072.349 kb on + strand, within AZOBR_RS05055at 1072.376 kb on + strand, within AZOBR_RS05055at 1072.397 kb on + strand, within AZOBR_RS05055at 1072.397 kb on + strand, within AZOBR_RS05055at 1072.398 kb on - strand, within AZOBR_RS05055

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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1,070,207 + +2.1
1,070,208 - +2.1
1,070,208 - +1.1
1,070,658 - AZOBR_RS05045 0.75 +0.5
1,071,107 + +0.7
1,071,107 + +0.2
1,071,169 + -0.8
1,071,170 - +1.0
1,071,170 - +2.3
1,071,183 + -0.1
1,071,184 - +1.1
1,071,408 + +0.4
1,071,409 - +0.6
1,071,424 - -4.2
1,071,782 + AZOBR_RS05055 0.18 +0.5
1,071,782 + AZOBR_RS05055 0.18 -0.9
1,071,783 - AZOBR_RS05055 0.18 -0.5
1,071,783 - AZOBR_RS05055 0.18 -1.2
1,071,935 + AZOBR_RS05055 0.29 +0.1
1,071,935 + AZOBR_RS05055 0.29 +0.5
1,071,936 - AZOBR_RS05055 0.29 +0.0
1,071,936 - AZOBR_RS05055 0.29 +0.5
1,071,941 + AZOBR_RS05055 0.30 +0.9
1,071,942 - AZOBR_RS05055 0.30 -2.0
1,071,951 - AZOBR_RS05055 0.30 +0.1
1,072,019 + AZOBR_RS05055 0.35 -2.7
1,072,019 + AZOBR_RS05055 0.35 -3.5
1,072,019 + AZOBR_RS05055 0.35 -1.7
1,072,020 - AZOBR_RS05055 0.36 -0.8
1,072,349 + AZOBR_RS05055 0.60 -0.3
1,072,376 + AZOBR_RS05055 0.62 -3.0
1,072,397 + AZOBR_RS05055 0.63 -0.1
1,072,397 + AZOBR_RS05055 0.63 -2.6
1,072,398 - AZOBR_RS05055 0.63 -0.5

Or see this region's nucleotide sequence