Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04095

Experiment: 2-pentyl-furan 2.671 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04085 and AZOBR_RS04090 are separated by 21 nucleotidesAZOBR_RS04090 and AZOBR_RS04095 are separated by 11 nucleotidesAZOBR_RS04095 and AZOBR_RS04100 are separated by 49 nucleotides AZOBR_RS04085: AZOBR_RS04085 - membrane protein, at 859,867 to 860,610 _RS04085 AZOBR_RS04090: AZOBR_RS04090 - haloacid dehalogenase, at 860,632 to 861,300 _RS04090 AZOBR_RS04095: AZOBR_RS04095 - glutamate 5-kinase, at 861,312 to 862,442 _RS04095 AZOBR_RS04100: AZOBR_RS04100 - GTPase CgtA, at 862,492 to 863,682 _RS04100 Position (kb) 861 862 863Strain fitness (log2 ratio) -3 -2 -1 0 1at 860.456 kb on - strand, within AZOBR_RS04085at 860.588 kb on - strandat 861.063 kb on - strand, within AZOBR_RS04090at 861.134 kb on + strand, within AZOBR_RS04090at 861.135 kb on - strand, within AZOBR_RS04090at 861.170 kb on + strand, within AZOBR_RS04090

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM
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860,456 - AZOBR_RS04085 0.79 -0.3
860,588 - +1.5
861,063 - AZOBR_RS04090 0.64 -3.1
861,134 + AZOBR_RS04090 0.75 -1.0
861,135 - AZOBR_RS04090 0.75 -0.8
861,170 + AZOBR_RS04090 0.80 +0.2

Or see this region's nucleotide sequence