Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03890 and AZOBR_RS03895 are separated by 95 nucleotides AZOBR_RS03895 and AZOBR_RS03900 are separated by 11 nucleotides AZOBR_RS03900 and AZOBR_RS03905 are separated by 1 nucleotides
AZOBR_RS03890: AZOBR_RS03890 - methyltransferase UbiE, at 821,119 to 822,225
_RS03890
AZOBR_RS03895: AZOBR_RS03895 - hypothetical protein, at 822,321 to 823,928
_RS03895
AZOBR_RS03900: AZOBR_RS03900 - plasmid partitioning protein ParA, at 823,940 to 824,563
_RS03900
AZOBR_RS03905: AZOBR_RS03905 - hypothetical protein, at 824,565 to 825,953
_RS03905
Position (kb) 822
823
824 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 821.386 kb on + strand, within AZOBR_RS03890 at 821.390 kb on - strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.936 kb on - strand, within AZOBR_RS03890 at 822.040 kb on + strand, within AZOBR_RS03890 at 822.116 kb on - strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.260 kb on + strand at 822.261 kb on - strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.465 kb on + strand at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895 at 823.680 kb on + strand, within AZOBR_RS03895 at 823.681 kb on - strand, within AZOBR_RS03895 at 823.926 kb on + strand at 824.547 kb on - strand at 824.561 kb on + strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.809 kb on + strand, within AZOBR_RS03905 at 824.810 kb on - strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.816 kb on - strand, within AZOBR_RS03905 at 824.816 kb on - strand, within AZOBR_RS03905 at 824.816 kb on - strand, within AZOBR_RS03905
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 821,386 + AZOBR_RS03890 0.24 -1.4 821,390 - AZOBR_RS03890 0.24 +0.5 821,548 + AZOBR_RS03890 0.39 +0.1 821,548 + AZOBR_RS03890 0.39 +0.5 821,548 + AZOBR_RS03890 0.39 -2.5 821,548 + AZOBR_RS03890 0.39 -0.4 821,548 + AZOBR_RS03890 0.39 -0.2 821,819 - AZOBR_RS03890 0.63 -3.2 821,819 - AZOBR_RS03890 0.63 -1.4 821,935 + AZOBR_RS03890 0.74 +0.3 821,935 + AZOBR_RS03890 0.74 -0.0 821,936 - AZOBR_RS03890 0.74 -1.5 822,040 + AZOBR_RS03890 0.83 -0.7 822,116 - -0.7 822,184 + -0.4 822,184 + +0.3 822,184 + +0.5 822,184 + +0.4 822,184 + +0.7 822,184 + +0.0 822,184 + -1.6 822,185 - -0.3 822,185 - -0.3 822,185 - -0.6 822,185 - +0.8 822,185 - +0.2 822,185 - -3.2 822,185 - -1.1 822,260 + +0.1 822,261 - -1.4 822,462 + -0.3 822,462 + +1.2 822,462 + +0.4 822,462 + -0.7 822,463 - -2.7 822,463 - -1.5 822,463 - +1.3 822,465 + +1.7 822,534 + AZOBR_RS03895 0.13 -1.5 822,534 + AZOBR_RS03895 0.13 -1.3 822,534 + AZOBR_RS03895 0.13 +0.9 823,680 + AZOBR_RS03895 0.85 -1.0 823,681 - AZOBR_RS03895 0.85 -3.1 823,926 + +1.3 824,547 - +0.3 824,561 + -4.5 824,562 - +1.2 824,562 - -1.8 824,562 - +0.2 824,562 - +0.7 824,562 - -0.3 824,809 + AZOBR_RS03905 0.18 -0.1 824,810 - AZOBR_RS03905 0.18 +0.1 824,815 + AZOBR_RS03905 0.18 -1.1 824,815 + AZOBR_RS03905 0.18 -0.4 824,815 + AZOBR_RS03905 0.18 -1.8 824,815 + AZOBR_RS03905 0.18 -1.4 824,816 - AZOBR_RS03905 0.18 +1.4 824,816 - AZOBR_RS03905 0.18 +0.1 824,816 - AZOBR_RS03905 0.18 +1.2
Or see this region's nucleotide sequence