Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03875 and AZOBR_RS03880 are separated by 59 nucleotides AZOBR_RS03880 and AZOBR_RS03885 are separated by 159 nucleotides AZOBR_RS03885 and AZOBR_RS03890 are separated by 149 nucleotides
AZOBR_RS03875: AZOBR_RS03875 - hypothetical protein, at 818,637 to 818,960
_RS03875
AZOBR_RS03880: AZOBR_RS03880 - recombinase RecR, at 819,020 to 819,613
_RS03880
AZOBR_RS03885: AZOBR_RS03885 - phosphoglycerate kinase, at 819,773 to 820,969
_RS03885
AZOBR_RS03890: AZOBR_RS03890 - methyltransferase UbiE, at 821,119 to 822,225
_RS03890
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 818.959 kb on - strand at 818.959 kb on - strand at 818.980 kb on + strand at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.560 kb on + strand at 819.611 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.774 kb on + strand at 819.775 kb on - strand at 819.775 kb on - strand at 819.775 kb on - strand at 821.113 kb on - strand at 821.113 kb on - strand at 821.239 kb on + strand, within AZOBR_RS03890 at 821.239 kb on + strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.386 kb on + strand, within AZOBR_RS03890 at 821.390 kb on - strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.936 kb on - strand, within AZOBR_RS03890
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 818,959 - -0.3 818,959 - +1.2 818,980 + -0.7 819,326 + AZOBR_RS03880 0.52 -0.5 819,326 + AZOBR_RS03880 0.52 -0.4 819,326 + AZOBR_RS03880 0.52 -0.8 819,326 + AZOBR_RS03880 0.52 -0.8 819,327 - AZOBR_RS03880 0.52 -0.9 819,327 - AZOBR_RS03880 0.52 -0.5 819,327 - AZOBR_RS03880 0.52 -2.0 819,327 - AZOBR_RS03880 0.52 -2.8 819,560 + -1.5 819,611 + -0.4 819,774 + +1.4 819,774 + -3.1 819,774 + -0.6 819,775 - +1.0 819,775 - -1.1 819,775 - +0.1 821,113 - -2.5 821,113 - +0.7 821,239 + AZOBR_RS03890 0.11 -0.3 821,239 + AZOBR_RS03890 0.11 -1.1 821,240 - AZOBR_RS03890 0.11 -0.9 821,240 - AZOBR_RS03890 0.11 +0.0 821,240 - AZOBR_RS03890 0.11 -2.9 821,240 - AZOBR_RS03890 0.11 -0.7 821,386 + AZOBR_RS03890 0.24 -1.4 821,390 - AZOBR_RS03890 0.24 +0.5 821,548 + AZOBR_RS03890 0.39 +0.1 821,548 + AZOBR_RS03890 0.39 +0.5 821,548 + AZOBR_RS03890 0.39 -2.5 821,548 + AZOBR_RS03890 0.39 -0.4 821,548 + AZOBR_RS03890 0.39 -0.2 821,819 - AZOBR_RS03890 0.63 -3.2 821,819 - AZOBR_RS03890 0.63 -1.4 821,935 + AZOBR_RS03890 0.74 +0.3 821,935 + AZOBR_RS03890 0.74 -0.0 821,936 - AZOBR_RS03890 0.74 -1.5
Or see this region's nucleotide sequence