Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00675 and AZOBR_RS00680 are separated by 3 nucleotides AZOBR_RS00680 and AZOBR_RS00685 are separated by 122 nucleotides AZOBR_RS00685 and AZOBR_RS00690 are separated by 121 nucleotides
AZOBR_RS00675: AZOBR_RS00675 - ABC transporter permease, at 133,720 to 134,409
_RS00675
AZOBR_RS00680: AZOBR_RS00680 - ABC transporter permease, at 134,413 to 135,117
_RS00680
AZOBR_RS00685: AZOBR_RS00685 - amino acid ABC transporter substrate-binding protein, at 135,240 to 136,076
_RS00685
AZOBR_RS00690: AZOBR_RS00690 - ATP-binding protein, at 136,198 to 137,004
_RS00690
Position (kb) 135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 134.244 kb on - strand, within AZOBR_RS00675 at 134.244 kb on - strand, within AZOBR_RS00675 at 134.493 kb on - strand, within AZOBR_RS00680 at 134.513 kb on + strand, within AZOBR_RS00680 at 134.513 kb on + strand, within AZOBR_RS00680 at 134.513 kb on + strand, within AZOBR_RS00680 at 134.513 kb on + strand, within AZOBR_RS00680 at 134.514 kb on - strand, within AZOBR_RS00680 at 134.514 kb on - strand, within AZOBR_RS00680 at 134.649 kb on - strand, within AZOBR_RS00680 at 134.834 kb on + strand, within AZOBR_RS00680 at 134.835 kb on - strand, within AZOBR_RS00680 at 134.835 kb on - strand, within AZOBR_RS00680 at 134.900 kb on + strand, within AZOBR_RS00680 at 134.901 kb on - strand, within AZOBR_RS00680 at 134.901 kb on - strand, within AZOBR_RS00680 at 134.901 kb on - strand, within AZOBR_RS00680 at 134.901 kb on - strand, within AZOBR_RS00680 at 134.942 kb on + strand, within AZOBR_RS00680 at 134.942 kb on + strand, within AZOBR_RS00680 at 134.942 kb on + strand, within AZOBR_RS00680 at 134.942 kb on + strand, within AZOBR_RS00680 at 134.943 kb on - strand, within AZOBR_RS00680 at 135.210 kb on - strand at 135.226 kb on - strand at 135.226 kb on - strand at 135.532 kb on + strand, within AZOBR_RS00685 at 135.533 kb on - strand, within AZOBR_RS00685 at 135.533 kb on - strand, within AZOBR_RS00685 at 135.673 kb on + strand, within AZOBR_RS00685 at 135.673 kb on + strand, within AZOBR_RS00685 at 135.673 kb on + strand, within AZOBR_RS00685 at 135.817 kb on + strand, within AZOBR_RS00685 at 135.817 kb on + strand, within AZOBR_RS00685 at 135.967 kb on + strand, within AZOBR_RS00685 at 136.119 kb on - strand at 136.119 kb on - strand at 136.535 kb on + strand, within AZOBR_RS00690
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 134,244 - AZOBR_RS00675 0.76 -2.9 134,244 - AZOBR_RS00675 0.76 -0.8 134,493 - AZOBR_RS00680 0.11 +0.5 134,513 + AZOBR_RS00680 0.14 -1.3 134,513 + AZOBR_RS00680 0.14 +0.6 134,513 + AZOBR_RS00680 0.14 +0.3 134,513 + AZOBR_RS00680 0.14 -0.3 134,514 - AZOBR_RS00680 0.14 +1.2 134,514 - AZOBR_RS00680 0.14 -2.4 134,649 - AZOBR_RS00680 0.33 -1.4 134,834 + AZOBR_RS00680 0.60 -0.0 134,835 - AZOBR_RS00680 0.60 +0.1 134,835 - AZOBR_RS00680 0.60 +1.7 134,900 + AZOBR_RS00680 0.69 -0.8 134,901 - AZOBR_RS00680 0.69 -3.2 134,901 - AZOBR_RS00680 0.69 -1.2 134,901 - AZOBR_RS00680 0.69 -1.4 134,901 - AZOBR_RS00680 0.69 -2.1 134,942 + AZOBR_RS00680 0.75 -0.4 134,942 + AZOBR_RS00680 0.75 +0.0 134,942 + AZOBR_RS00680 0.75 -3.2 134,942 + AZOBR_RS00680 0.75 -1.0 134,943 - AZOBR_RS00680 0.75 +0.6 135,210 - +0.4 135,226 - -0.5 135,226 - -0.5 135,532 + AZOBR_RS00685 0.35 -0.1 135,533 - AZOBR_RS00685 0.35 +0.7 135,533 - AZOBR_RS00685 0.35 -1.7 135,673 + AZOBR_RS00685 0.52 -2.1 135,673 + AZOBR_RS00685 0.52 +1.1 135,673 + AZOBR_RS00685 0.52 +0.3 135,817 + AZOBR_RS00685 0.69 -2.3 135,817 + AZOBR_RS00685 0.69 -0.3 135,967 + AZOBR_RS00685 0.87 -1.1 136,119 - +0.5 136,119 - -1.6 136,535 + AZOBR_RS00690 0.42 -1.9
Or see this region's nucleotide sequence