Experiment: 2-pentyl-furan 2.671 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00070 and AZOBR_RS00075 are separated by 139 nucleotides AZOBR_RS00075 and AZOBR_RS00080 are separated by 314 nucleotides AZOBR_RS00080 and AZOBR_RS00085 are separated by 290 nucleotides
AZOBR_RS00070: AZOBR_RS00070 - glycerol-3-phosphate transporter permease, at 2,801 to 3,685
_RS00070
AZOBR_RS00075: AZOBR_RS00075 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 3,825 to 5,162
_RS00075
AZOBR_RS00080: AZOBR_RS00080 - hypothetical protein, at 5,477 to 5,824
_RS00080
AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206
_RS00085
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 2.929 kb on - strand, within AZOBR_RS00070 at 3.015 kb on + strand, within AZOBR_RS00070 at 3.174 kb on + strand, within AZOBR_RS00070 at 3.174 kb on + strand, within AZOBR_RS00070 at 3.175 kb on - strand, within AZOBR_RS00070 at 3.175 kb on - strand, within AZOBR_RS00070 at 3.175 kb on - strand, within AZOBR_RS00070 at 3.369 kb on + strand, within AZOBR_RS00070 at 3.369 kb on + strand, within AZOBR_RS00070 at 3.487 kb on - strand, within AZOBR_RS00070 at 3.487 kb on - strand, within AZOBR_RS00070 at 3.487 kb on - strand, within AZOBR_RS00070 at 3.645 kb on + strand at 3.646 kb on - strand at 3.820 kb on + strand at 4.054 kb on + strand, within AZOBR_RS00075 at 4.054 kb on + strand, within AZOBR_RS00075 at 4.055 kb on - strand, within AZOBR_RS00075 at 4.055 kb on - strand, within AZOBR_RS00075 at 4.153 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand, within AZOBR_RS00075 at 4.180 kb on + strand at 4.180 kb on + strand, within AZOBR_RS00075 at 4.181 kb on - strand, within AZOBR_RS00075 at 4.181 kb on - strand, within AZOBR_RS00075 at 4.700 kb on - strand, within AZOBR_RS00075 at 4.762 kb on + strand, within AZOBR_RS00075 at 4.763 kb on - strand, within AZOBR_RS00075 at 4.765 kb on + strand, within AZOBR_RS00075 at 4.766 kb on - strand, within AZOBR_RS00075 at 4.786 kb on + strand, within AZOBR_RS00075 at 4.786 kb on + strand, within AZOBR_RS00075 at 4.787 kb on - strand, within AZOBR_RS00075 at 4.787 kb on - strand, within AZOBR_RS00075 at 4.954 kb on + strand, within AZOBR_RS00075 at 4.954 kb on + strand, within AZOBR_RS00075 at 5.089 kb on + strand at 5.090 kb on - strand at 5.194 kb on + strand at 5.195 kb on - strand at 5.323 kb on + strand at 5.342 kb on + strand at 5.342 kb on + strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.343 kb on - strand at 5.464 kb on + strand at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.595 kb on + strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.596 kb on - strand, within AZOBR_RS00080 at 5.620 kb on - strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.658 kb on + strand, within AZOBR_RS00080 at 5.659 kb on - strand, within AZOBR_RS00080 at 5.706 kb on + strand, within AZOBR_RS00080 at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.962 kb on + strand at 5.963 kb on - strand at 5.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-pentyl-furan 2.671 mM remove 2,929 - AZOBR_RS00070 0.14 -1.5 3,015 + AZOBR_RS00070 0.24 -0.1 3,174 + AZOBR_RS00070 0.42 -1.8 3,174 + AZOBR_RS00070 0.42 +0.5 3,175 - AZOBR_RS00070 0.42 -0.7 3,175 - AZOBR_RS00070 0.42 -1.2 3,175 - AZOBR_RS00070 0.42 +0.5 3,369 + AZOBR_RS00070 0.64 +0.1 3,369 + AZOBR_RS00070 0.64 -2.4 3,487 - AZOBR_RS00070 0.78 -2.4 3,487 - AZOBR_RS00070 0.78 +0.7 3,487 - AZOBR_RS00070 0.78 -3.0 3,645 + -0.9 3,646 - -1.5 3,820 + +0.1 4,054 + AZOBR_RS00075 0.17 -0.3 4,054 + AZOBR_RS00075 0.17 -1.9 4,055 - AZOBR_RS00075 0.17 +0.1 4,055 - AZOBR_RS00075 0.17 -0.4 4,153 + AZOBR_RS00075 0.25 +0.4 4,180 + AZOBR_RS00075 0.27 +0.1 4,180 + AZOBR_RS00075 0.27 -2.8 4,180 + AZOBR_RS00075 0.27 -0.3 4,180 + -0.7 4,180 + AZOBR_RS00075 0.27 -1.5 4,181 - AZOBR_RS00075 0.27 +1.5 4,181 - AZOBR_RS00075 0.27 -1.0 4,700 - AZOBR_RS00075 0.65 -0.6 4,762 + AZOBR_RS00075 0.70 +0.0 4,763 - AZOBR_RS00075 0.70 -0.5 4,765 + AZOBR_RS00075 0.70 -0.9 4,766 - AZOBR_RS00075 0.70 +0.7 4,786 + AZOBR_RS00075 0.72 -0.8 4,786 + AZOBR_RS00075 0.72 +0.9 4,787 - AZOBR_RS00075 0.72 +0.2 4,787 - AZOBR_RS00075 0.72 -0.0 4,954 + AZOBR_RS00075 0.84 +0.7 4,954 + AZOBR_RS00075 0.84 -0.1 5,089 + +0.5 5,090 - -2.7 5,194 + +0.4 5,195 - -0.8 5,323 + +1.8 5,342 + -0.7 5,342 + -0.2 5,343 - +0.5 5,343 - +0.0 5,343 - +0.8 5,343 - +0.2 5,464 + -0.3 5,595 + AZOBR_RS00080 0.34 -0.7 5,595 + AZOBR_RS00080 0.34 -0.3 5,595 + AZOBR_RS00080 0.34 +1.3 5,596 - AZOBR_RS00080 0.34 -3.7 5,596 - AZOBR_RS00080 0.34 +0.5 5,596 - AZOBR_RS00080 0.34 +0.3 5,596 - AZOBR_RS00080 0.34 -0.7 5,620 - AZOBR_RS00080 0.41 -2.9 5,658 + AZOBR_RS00080 0.52 -1.7 5,658 + AZOBR_RS00080 0.52 -1.1 5,659 - AZOBR_RS00080 0.52 -0.2 5,706 + AZOBR_RS00080 0.66 -2.9 5,962 + +0.2 5,962 + -0.0 5,962 + +0.5 5,962 + -0.2 5,962 + -3.2 5,962 + +0.6 5,962 + -3.8 5,962 + +1.1 5,962 + +0.4 5,963 - +0.0 5,963 - +0.9
Or see this region's nucleotide sequence