Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19385 and IAI47_19390 overlap by 4 nucleotides IAI47_19390 and IAI47_19395 overlap by 4 nucleotides
IAI47_19385: IAI47_19385 - (2Fe-2S)-binding protein, at 103,125 to 103,589
_19385
IAI47_19390: IAI47_19390 - xanthine dehydrogenase family protein subunit M, at 103,586 to 104,578
_19390
IAI47_19395: IAI47_19395 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 104,575 to 106,884
_19395
Position (kb) 103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.593 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.608 kb on - strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.613 kb on - strand at 102.613 kb on - strand at 102.705 kb on + strand at 102.706 kb on - strand at 102.706 kb on - strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.710 kb on + strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.711 kb on - strand at 102.724 kb on + strand at 102.725 kb on - strand at 102.725 kb on - strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.784 kb on + strand at 102.802 kb on - strand at 102.837 kb on + strand at 102.837 kb on + strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.838 kb on - strand at 102.887 kb on + strand at 102.933 kb on - strand at 102.945 kb on + strand at 102.979 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.997 kb on + strand at 102.998 kb on - strand at 102.998 kb on - strand at 102.998 kb on - strand at 103.005 kb on + strand at 103.005 kb on + strand at 103.019 kb on - strand at 103.055 kb on + strand at 103.056 kb on - strand at 103.076 kb on - strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.114 kb on + strand at 103.115 kb on - strand at 103.115 kb on - strand at 103.120 kb on + strand at 103.121 kb on - strand at 103.203 kb on - strand, within IAI47_19385 at 103.214 kb on + strand, within IAI47_19385 at 103.385 kb on + strand, within IAI47_19385 at 103.413 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.433 kb on + strand, within IAI47_19385 at 103.434 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.452 kb on - strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.494 kb on + strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.495 kb on - strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.496 kb on + strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.497 kb on - strand, within IAI47_19385 at 103.640 kb on - strand at 103.726 kb on - strand, within IAI47_19390 at 103.726 kb on - strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.743 kb on + strand, within IAI47_19390 at 103.753 kb on + strand, within IAI47_19390 at 103.778 kb on - strand, within IAI47_19390 at 103.856 kb on + strand, within IAI47_19390 at 103.894 kb on + strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.895 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.898 kb on - strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.920 kb on + strand, within IAI47_19390 at 103.930 kb on + strand, within IAI47_19390 at 103.944 kb on - strand, within IAI47_19390 at 103.946 kb on + strand, within IAI47_19390 at 103.966 kb on + strand, within IAI47_19390 at 103.967 kb on - strand, within IAI47_19390 at 103.976 kb on - strand, within IAI47_19390 at 104.225 kb on - strand, within IAI47_19390 at 104.273 kb on + strand, within IAI47_19390 at 104.274 kb on - strand, within IAI47_19390 at 104.278 kb on + strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.301 kb on - strand, within IAI47_19390 at 104.368 kb on + strand, within IAI47_19390 at 104.443 kb on + strand, within IAI47_19390 at 104.444 kb on - strand, within IAI47_19390 at 104.513 kb on + strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.514 kb on - strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.515 kb on + strand at 104.516 kb on - strand at 104.516 kb on - strand at 104.585 kb on + strand at 104.586 kb on - strand at 104.586 kb on - strand at 104.708 kb on - strand at 104.740 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.760 kb on + strand at 104.761 kb on - strand at 104.778 kb on + strand at 104.778 kb on + strand at 104.779 kb on - strand at 104.834 kb on - strand, within IAI47_19395 at 104.834 kb on - strand, within IAI47_19395 at 104.869 kb on - strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.905 kb on + strand, within IAI47_19395 at 104.906 kb on - strand, within IAI47_19395 at 104.906 kb on - strand, within IAI47_19395 at 104.906 kb on - strand, within IAI47_19395 at 104.931 kb on + strand, within IAI47_19395 at 104.932 kb on - strand, within IAI47_19395 at 104.932 kb on - strand, within IAI47_19395 at 104.950 kb on - strand, within IAI47_19395 at 104.989 kb on + strand, within IAI47_19395 at 104.989 kb on + strand, within IAI47_19395 at 104.989 kb on + strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 104.990 kb on - strand, within IAI47_19395 at 105.017 kb on - strand, within IAI47_19395 at 105.017 kb on - strand, within IAI47_19395 at 105.017 kb on - strand, within IAI47_19395 at 105.059 kb on + strand, within IAI47_19395 at 105.060 kb on - strand, within IAI47_19395 at 105.148 kb on + strand, within IAI47_19395 at 105.167 kb on - strand, within IAI47_19395 at 105.167 kb on - strand, within IAI47_19395 at 105.167 kb on - strand, within IAI47_19395 at 105.171 kb on + strand, within IAI47_19395 at 105.171 kb on + strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.172 kb on - strand, within IAI47_19395 at 105.319 kb on + strand, within IAI47_19395 at 105.319 kb on + strand, within IAI47_19395 at 105.319 kb on + strand, within IAI47_19395 at 105.320 kb on - strand, within IAI47_19395 at 105.320 kb on - strand, within IAI47_19395 at 105.355 kb on + strand, within IAI47_19395 at 105.355 kb on + strand, within IAI47_19395 at 105.355 kb on + strand, within IAI47_19395 at 105.356 kb on - strand, within IAI47_19395 at 105.356 kb on - strand, within IAI47_19395 at 105.357 kb on + strand, within IAI47_19395 at 105.357 kb on + strand, within IAI47_19395 at 105.462 kb on + strand, within IAI47_19395 at 105.462 kb on + strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395 at 105.463 kb on - strand, within IAI47_19395
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 102,593 + -1.6 102,607 + -0.8 102,607 + -2.4 102,607 + +0.8 102,608 - +1.0 102,612 + +0.1 102,612 + -0.4 102,612 + -0.1 102,613 - +1.8 102,613 - +0.2 102,705 + +0.5 102,706 - -0.8 102,706 - +0.5 102,710 + -0.0 102,710 + +0.4 102,710 + -1.8 102,710 + -0.4 102,711 - -0.1 102,711 - +0.5 102,711 - +1.2 102,724 + -0.8 102,725 - -0.2 102,725 - -0.8 102,747 + -2.1 102,747 + +0.5 102,784 + -0.8 102,802 - -0.1 102,837 + +1.3 102,837 + -1.5 102,838 - -0.2 102,838 - -1.6 102,838 - +1.5 102,838 - +0.5 102,887 + +1.7 102,933 - +0.2 102,945 + +0.4 102,979 + -0.6 102,997 + +1.2 102,997 + -1.2 102,997 + +0.7 102,997 + +0.8 102,998 - -0.4 102,998 - +1.4 102,998 - +0.4 103,005 + +1.0 103,005 + -0.8 103,019 - +0.2 103,055 + +0.2 103,056 - -0.2 103,076 - +0.2 103,114 + -1.0 103,114 + -0.1 103,114 + -0.4 103,115 - -0.1 103,115 - +0.3 103,120 + +0.2 103,121 - -1.0 103,203 - IAI47_19385 0.17 -0.2 103,214 + IAI47_19385 0.19 -0.4 103,385 + IAI47_19385 0.56 -1.4 103,413 + IAI47_19385 0.62 -0.8 103,433 + IAI47_19385 0.66 -0.1 103,433 + IAI47_19385 0.66 -0.6 103,433 + IAI47_19385 0.66 +0.2 103,433 + IAI47_19385 0.66 +1.5 103,433 + IAI47_19385 0.66 +1.2 103,433 + IAI47_19385 0.66 +1.5 103,434 - IAI47_19385 0.66 -0.8 103,452 - IAI47_19385 0.70 +2.4 103,452 - IAI47_19385 0.70 +0.8 103,494 + IAI47_19385 0.79 +0.5 103,494 + IAI47_19385 0.79 -1.4 103,494 + IAI47_19385 0.79 -1.0 103,494 + IAI47_19385 0.79 -0.0 103,494 + IAI47_19385 0.79 -0.4 103,494 + IAI47_19385 0.79 -0.2 103,494 + IAI47_19385 0.79 +1.4 103,495 - IAI47_19385 0.80 +0.0 103,495 - IAI47_19385 0.80 +0.7 103,495 - IAI47_19385 0.80 +0.5 103,495 - IAI47_19385 0.80 -0.8 103,495 - IAI47_19385 0.80 +0.2 103,495 - IAI47_19385 0.80 -0.6 103,495 - IAI47_19385 0.80 -0.6 103,496 + IAI47_19385 0.80 -1.8 103,496 + IAI47_19385 0.80 -1.4 103,496 + IAI47_19385 0.80 +0.7 103,496 + IAI47_19385 0.80 -0.6 103,496 + IAI47_19385 0.80 -0.0 103,496 + IAI47_19385 0.80 -0.1 103,496 + IAI47_19385 0.80 -0.1 103,496 + IAI47_19385 0.80 -0.6 103,497 - IAI47_19385 0.80 -0.2 103,497 - IAI47_19385 0.80 -0.8 103,497 - IAI47_19385 0.80 +1.8 103,497 - IAI47_19385 0.80 +0.7 103,497 - IAI47_19385 0.80 -0.5 103,497 - IAI47_19385 0.80 -2.4 103,497 - IAI47_19385 0.80 -0.2 103,640 - +0.9 103,726 - IAI47_19390 0.14 -0.1 103,726 - IAI47_19390 0.14 -0.5 103,743 + IAI47_19390 0.16 -0.5 103,743 + IAI47_19390 0.16 -0.8 103,753 + IAI47_19390 0.17 -0.2 103,778 - IAI47_19390 0.19 +2.8 103,856 + IAI47_19390 0.27 +0.7 103,894 + IAI47_19390 0.31 +2.2 103,895 - IAI47_19390 0.31 +1.2 103,895 - IAI47_19390 0.31 -0.7 103,898 - IAI47_19390 0.31 +0.9 103,898 - IAI47_19390 0.31 -0.0 103,898 - IAI47_19390 0.31 -0.4 103,898 - IAI47_19390 0.31 +0.2 103,920 + IAI47_19390 0.34 +0.2 103,920 + IAI47_19390 0.34 +1.1 103,930 + IAI47_19390 0.35 +0.8 103,944 - IAI47_19390 0.36 +0.6 103,946 + IAI47_19390 0.36 +1.8 103,966 + IAI47_19390 0.38 +0.8 103,967 - IAI47_19390 0.38 -0.1 103,976 - IAI47_19390 0.39 +0.6 104,225 - IAI47_19390 0.64 +0.4 104,273 + IAI47_19390 0.69 +1.5 104,274 - IAI47_19390 0.69 +0.3 104,278 + IAI47_19390 0.70 +1.2 104,301 - IAI47_19390 0.72 +0.7 104,301 - IAI47_19390 0.72 +1.9 104,301 - IAI47_19390 0.72 +0.4 104,368 + IAI47_19390 0.79 -0.1 104,443 + IAI47_19390 0.86 -0.1 104,444 - IAI47_19390 0.86 +0.6 104,513 + -1.0 104,514 - +2.5 104,514 - -0.8 104,514 - +0.5 104,514 - +1.2 104,515 + -2.4 104,515 + -1.0 104,515 + +3.0 104,516 - +0.2 104,516 - +0.8 104,585 + -1.8 104,586 - -0.8 104,586 - -0.5 104,708 - +1.6 104,740 + -0.2 104,760 + -0.1 104,760 + -0.4 104,760 + +1.5 104,760 + +0.2 104,760 + -0.9 104,760 + +0.6 104,761 - +0.2 104,778 + -0.7 104,778 + -0.9 104,779 - +0.4 104,834 - IAI47_19395 0.11 +1.5 104,834 - IAI47_19395 0.11 -0.9 104,869 - IAI47_19395 0.13 -1.1 104,905 + IAI47_19395 0.14 -0.0 104,905 + IAI47_19395 0.14 +0.5 104,905 + IAI47_19395 0.14 -0.4 104,905 + IAI47_19395 0.14 +1.5 104,905 + IAI47_19395 0.14 +0.5 104,906 - IAI47_19395 0.14 +2.5 104,906 - IAI47_19395 0.14 -0.8 104,906 - IAI47_19395 0.14 +1.9 104,931 + IAI47_19395 0.15 -0.4 104,932 - IAI47_19395 0.15 +1.8 104,932 - IAI47_19395 0.15 -0.2 104,950 - IAI47_19395 0.16 +0.2 104,989 + IAI47_19395 0.18 -0.1 104,989 + IAI47_19395 0.18 +0.2 104,989 + IAI47_19395 0.18 +0.9 104,990 - IAI47_19395 0.18 -0.4 104,990 - IAI47_19395 0.18 -1.2 104,990 - IAI47_19395 0.18 +1.3 104,990 - IAI47_19395 0.18 +0.2 104,990 - IAI47_19395 0.18 +0.5 104,990 - IAI47_19395 0.18 -1.2 105,017 - IAI47_19395 0.19 +1.0 105,017 - IAI47_19395 0.19 -0.6 105,017 - IAI47_19395 0.19 +0.4 105,059 + IAI47_19395 0.21 +0.9 105,060 - IAI47_19395 0.21 +0.2 105,148 + IAI47_19395 0.25 +0.5 105,167 - IAI47_19395 0.26 +0.2 105,167 - IAI47_19395 0.26 -1.0 105,167 - IAI47_19395 0.26 -0.4 105,171 + IAI47_19395 0.26 +0.2 105,171 + IAI47_19395 0.26 -2.1 105,172 - IAI47_19395 0.26 -0.1 105,172 - IAI47_19395 0.26 +0.2 105,172 - IAI47_19395 0.26 -0.3 105,172 - IAI47_19395 0.26 +1.8 105,172 - IAI47_19395 0.26 -0.0 105,319 + IAI47_19395 0.32 +0.1 105,319 + IAI47_19395 0.32 +0.8 105,319 + IAI47_19395 0.32 -0.5 105,320 - IAI47_19395 0.32 -0.5 105,320 - IAI47_19395 0.32 -0.0 105,355 + IAI47_19395 0.34 -0.7 105,355 + IAI47_19395 0.34 -1.8 105,355 + IAI47_19395 0.34 -0.5 105,356 - IAI47_19395 0.34 -1.4 105,356 - IAI47_19395 0.34 -0.2 105,357 + IAI47_19395 0.34 +1.2 105,357 + IAI47_19395 0.34 +1.2 105,462 + IAI47_19395 0.38 -2.0 105,462 + IAI47_19395 0.38 +0.4 105,463 - IAI47_19395 0.38 +1.8 105,463 - IAI47_19395 0.38 +1.6 105,463 - IAI47_19395 0.38 -0.2 105,463 - IAI47_19395 0.38 -0.0
Or see this region's nucleotide sequence