Strain Fitness in Pantoea sp. MT58 around IAI47_17680

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
3,751,748	+		IAI47_17670	0.68	-0.7
3,751,753	+		IAI47_17670	0.69	+0.8
3,751,754	-		IAI47_17670	0.69	+0.9
3,751,838	+		IAI47_17670	0.75	+0.3
3,751,839	-		IAI47_17670	0.75	+0.8
3,751,839	-		IAI47_17670	0.75	+0.1
3,751,839	-		IAI47_17670	0.75	-0.1
3,751,839	-		IAI47_17670	0.75	-0.9
3,751,839	-		IAI47_17670	0.75	+1.6
3,751,839	-		IAI47_17670	0.75	+0.7
3,751,850	+		IAI47_17670	0.76	+0.5
3,751,850	+		IAI47_17670	0.76	-0.4
3,751,850	+		IAI47_17670	0.76	+0.3
3,751,851	-		IAI47_17670	0.76	+0.3
3,751,851	-		IAI47_17670	0.76	-0.4
3,751,851	-		IAI47_17670	0.76	-0.0
3,751,859	+		IAI47_17670	0.77	-0.1
3,751,859	+		IAI47_17670	0.77	+0.3
3,751,859	+		IAI47_17670	0.77	+0.6
3,751,860	-		IAI47_17670	0.77	-0.2
3,751,860	-		IAI47_17670	0.77	+0.6
3,751,865	+		IAI47_17670	0.78	+0.0
3,751,866	-		IAI47_17670	0.78	+2.0
3,751,866	-		IAI47_17670	0.78	+0.0
3,751,873	+		IAI47_17670	0.78	+2.3
3,751,889	+		IAI47_17670	0.79	-0.1
3,751,889	+		IAI47_17670	0.79	+1.8
3,751,889	+		IAI47_17670	0.79	+0.5
3,751,890	-		IAI47_17670	0.80	-1.1
3,751,904	-		IAI47_17670	0.81	-1.1
3,751,954	+		IAI47_17670	0.85	+0.9
3,751,954	+		IAI47_17670	0.85	-0.2
3,751,954	+		IAI47_17670	0.85	-0.4
3,751,955	-		IAI47_17670	0.85	+0.8
3,751,965	+		IAI47_17670	0.86	+0.5
3,751,965	+		IAI47_17670	0.86	+0.1
3,751,966	-		IAI47_17670	0.86	-0.3
3,751,966	-		IAI47_17670	0.86	+0.9
3,751,966	-		IAI47_17670	0.86	-0.2
3,751,999	-		IAI47_17670	0.88	-0.4
3,752,015	+		IAI47_17670	0.90	+1.4
3,752,015	+		IAI47_17670	0.90	+0.3
3,752,016	-		IAI47_17670	0.90	+0.8
3,752,016	-		IAI47_17670	0.90	-0.7
3,752,060	+				+0.3
3,752,060	+				-0.2
3,752,060	+				+1.2
3,752,060	+				-0.1
3,752,061	-				+0.6
3,752,061	-				+0.5
3,752,061	-				+1.7
3,752,061	-				-0.1
3,752,141	+				+1.3
3,752,170	+				-0.3
3,752,229	+				-2.5
3,752,230	-				+2.3
3,752,230	-				-2.0
3,752,285	+				+0.8
3,752,286	-				+0.6
3,752,297	+				+0.0
3,752,298	-				+0.4
3,752,298	-				+0.8
3,752,298	-				-1.0
3,752,298	-				+1.6
3,752,298	-				-0.4
3,752,339	+		IAI47_17675	0.20	+0.4
3,752,340	-		IAI47_17675	0.21	+0.3
3,752,340	-		IAI47_17675	0.21	+0.1
3,752,355	+		IAI47_17675	0.28	+1.1
3,752,355	+		IAI47_17675	0.28	-0.4
3,752,355	+		IAI47_17675	0.28	+0.1
3,752,356	-		IAI47_17675	0.29	+0.2
3,752,356	-		IAI47_17675	0.29	-0.0
3,752,356	-		IAI47_17675	0.29	-0.7
3,752,356	-		IAI47_17675	0.29	-2.0
3,752,356	-		IAI47_17675	0.29	-0.5
3,752,356	-		IAI47_17675	0.29	+0.3
3,752,356	-		IAI47_17675	0.29	-0.9
3,752,356	-		IAI47_17675	0.29	+0.3
3,752,357	+		IAI47_17675	0.29	+0.4
3,752,358	-		IAI47_17675	0.30	-0.8
3,752,415	+		IAI47_17675	0.57	-0.1
3,752,415	+		IAI47_17675	0.57	-0.8
3,752,415	+		IAI47_17675	0.57	-0.2
3,752,416	-		IAI47_17675	0.57	-0.7
3,752,476	-		IAI47_17675	0.86	-0.2
3,752,536	-				+0.3
3,752,536	-				+0.2
3,752,536	-				+0.3
3,752,556	+				+1.7
3,752,556	+				+0.1
3,752,556	+				-0.7
3,752,556	+				-0.0
3,752,556	+				-1.1
3,752,556	+				+0.3
3,752,556	+				+1.3
3,752,557	-				+0.1
3,752,560	+				-1.2
3,752,560	+				+0.0
3,752,560	+				-0.7
3,752,560	+				-0.1
3,752,561	-				+1.5
3,752,562	+				+0.3
3,752,562	+				+0.5
3,752,562	+				-0.4
3,752,562	+				+0.4
3,752,562	+				+2.3
3,752,562	+				-0.4
3,752,562	+				+1.1
3,752,562	+				+0.0
3,752,562	+				-0.8
3,752,562	+				+1.5
3,752,562	+				-1.0
3,752,562	+				+0.6
3,752,563	-				+1.9
3,752,563	-				-0.0
3,752,563	-				-0.9
3,752,563	-				+0.1
3,752,563	-				-0.4
3,752,563	-				-0.9
3,752,563	-				-0.4
3,752,563	-				+0.3
3,752,563	-				+0.8
3,752,563	-				+1.3
3,752,563	-				+0.7
3,752,563	-				+0.1
3,752,563	-				+1.2
3,752,565	-				+2.3
3,752,651	+				+0.9
3,752,652	-				+0.8
3,752,652	-				+0.8
3,752,652	-				-1.7
3,752,652	-				-1.2
3,752,666	+				+0.6
3,752,669	+				+0.2
3,752,669	+				+0.2
3,752,670	-				-0.5
3,752,684	-				-1.1
3,752,697	+				+1.5
3,752,698	-				-1.0
3,752,698	-				-0.5
3,752,747	+				+0.7
3,752,747	+				+0.6
3,752,747	+				-0.0
3,752,747	+				-0.7
3,752,747	+				+0.3
3,752,748	-				-0.3
3,752,748	-				+0.1
3,752,748	-				+0.7
3,752,748	-				+0.3
3,752,748	-				-0.0
3,752,748	-				+0.5
3,752,752	-				+0.3
3,752,752	-				-0.2
3,752,752	-				+0.5
3,752,752	-				-0.7
3,752,772	+				-1.0
3,752,772	+				-0.3
3,752,861	+		IAI47_17680	0.12	+0.6
3,752,861	+		IAI47_17680	0.12	+0.1
3,752,875	-		IAI47_17680	0.13	-0.1
3,752,875	-		IAI47_17680	0.13	+0.9
3,752,924	+		IAI47_17680	0.17	-0.4
3,752,924	+		IAI47_17680	0.17	+0.0
3,752,924	+		IAI47_17680	0.17	+1.5
3,752,925	-		IAI47_17680	0.17	+1.3
3,752,925	-		IAI47_17680	0.17	+0.6
3,753,037	-		IAI47_17680	0.27	-0.7
3,753,071	+		IAI47_17680	0.30	+1.1
3,753,072	-		IAI47_17680	0.30	+1.3
3,753,072	-		IAI47_17680	0.30	+0.3
3,753,072	-		IAI47_17680	0.30	-0.1
3,753,072	-		IAI47_17680	0.30	-0.7
3,753,152	+		IAI47_17680	0.37	-0.4
3,753,153	-		IAI47_17680	0.37	+0.7
3,753,153	-		IAI47_17680	0.37	+1.1
3,753,193	+		IAI47_17680	0.40	+0.3
3,753,193	+		IAI47_17680	0.40	+1.2
3,753,194	-		IAI47_17680	0.40	-1.8
3,753,194	-		IAI47_17680	0.40	+2.0
3,753,197	+		IAI47_17680	0.40	-0.7
3,753,197	+		IAI47_17680	0.40	-1.3
3,753,197	+		IAI47_17680	0.40	-1.0
3,753,197	+		IAI47_17680	0.40	-0.7
3,753,197	+		IAI47_17680	0.40	-0.3
3,753,197	+		IAI47_17680	0.40	+0.3
3,753,197	+		IAI47_17680	0.40	+0.3
3,753,197	+		IAI47_17680	0.40	-1.4
3,753,197	+		IAI47_17680	0.40	-0.6
3,753,198	-		IAI47_17680	0.40	+2.0
3,753,198	-		IAI47_17680	0.40	-0.2
3,753,198	-		IAI47_17680	0.40	-1.2
3,753,374	+		IAI47_17680	0.55	-0.5
3,753,374	+		IAI47_17680	0.55	-1.0
3,753,374	+		IAI47_17680	0.55	-0.1
3,753,375	-		IAI47_17680	0.55	-0.4
3,753,375	-		IAI47_17680	0.55	-1.5
3,753,375	-		IAI47_17680	0.55	-0.6
3,753,375	-		IAI47_17680	0.55	+1.5
3,753,375	-		IAI47_17680	0.55	-0.7
3,753,410	-		IAI47_17680	0.58	-0.9
3,753,431	+		IAI47_17680	0.60	-1.5
3,753,432	-		IAI47_17680	0.60	-0.6
3,753,432	-		IAI47_17680	0.60	+1.3
3,753,432	-		IAI47_17680	0.60	-1.2
3,753,432	-		IAI47_17680	0.60	+0.1
3,753,432	-		IAI47_17680	0.60	-2.5
3,753,432	-		IAI47_17680	0.60	+0.1
3,753,450	-		IAI47_17680	0.62	-1.1
3,753,455	+		IAI47_17680	0.62	+1.3
3,753,456	-		IAI47_17680	0.62	-0.4
3,753,456	-		IAI47_17680	0.62	-0.6
3,753,456	-		IAI47_17680	0.62	+0.3
3,753,464	+		IAI47_17680	0.63	-1.1
3,753,464	+		IAI47_17680	0.63	-0.6
3,753,464	+		IAI47_17680	0.63	+1.9
3,753,464	+		IAI47_17680	0.63	+1.8
3,753,464	+		IAI47_17680	0.63	+0.3
3,753,464	+		IAI47_17680	0.63	-0.0
3,753,464	+		IAI47_17680	0.63	+0.5
3,753,464	+		IAI47_17680	0.63	+0.3
3,753,464	+		IAI47_17680	0.63	+2.7
3,753,464	+		IAI47_17680	0.63	+1.9
3,753,464	+		IAI47_17680	0.63	-0.7
3,753,464	+		IAI47_17680	0.63	+0.3
3,753,464	+		IAI47_17680	0.63	-1.1
3,753,464	+		IAI47_17680	0.63	-0.2
3,753,465	-		IAI47_17680	0.63	+0.3
3,753,465	-		IAI47_17680	0.63	-1.0
3,753,506	+		IAI47_17680	0.66	+1.6
3,753,506	+		IAI47_17680	0.66	+0.3
3,753,506	+		IAI47_17680	0.66	+1.1
3,753,507	-		IAI47_17680	0.66	+0.7
3,753,507	-		IAI47_17680	0.66	+0.4
3,753,507	-		IAI47_17680	0.66	+0.9
3,753,507	-		IAI47_17680	0.66	-1.0
3,753,507	-		IAI47_17680	0.66	+0.3
3,753,507	-		IAI47_17680	0.66	-0.5
3,753,507	-		IAI47_17680	0.66	+0.9
3,753,507	-		IAI47_17680	0.66	+0.3
3,753,548	+		IAI47_17680	0.70	-2.0
3,753,576	+		IAI47_17680	0.72	-0.1
3,753,577	-		IAI47_17680	0.72	-0.1
3,753,650	+		IAI47_17680	0.78	+1.3
3,753,717	-		IAI47_17680	0.84	+0.5
3,753,792	+				-0.1
3,753,792	+				-0.6
3,753,840	+				+1.9
3,753,841	-				-1.0
3,753,841	-				-0.2
3,753,924	-				-0.1
3,753,944	+				-2.6
3,753,944	+				+0.0
3,753,944	+				-0.1
3,753,944	+				+0.3
3,753,944	+				-0.2
3,753,944	+				+1.0
3,753,944	+				+1.3
3,753,944	+				+0.6
3,753,944	+				-1.2
3,753,944	+				-0.8
3,753,944	+				+0.9
3,753,944	+				-0.7
3,753,944	+				-0.5
3,753,944	+				+0.1
3,753,944	+				+0.1
3,753,944	+				-2.0
3,753,944	+				+0.3
3,753,945	-				+1.4
3,753,945	-				+1.2
3,753,945	-				+1.1
3,753,945	-				+1.2
3,753,945	-				+0.3
3,753,945	-				+0.7
3,753,945	-				+2.3
3,753,945	-				+0.8
3,753,945	-				+0.8
3,753,945	-				+2.6
3,753,945	-				+1.1
3,753,945	-				-0.2
3,753,945	-				-0.7
3,753,945	-				+1.3
3,753,967	+				-1.1
3,753,967	+				-0.3
3,753,967	+				-1.7
3,753,968	-				+0.3
3,753,968	-				+0.3
3,753,976	+				+0.7
3,753,976	+				+0.4
3,753,976	+				-0.3
3,753,977	-				-0.8
3,753,993	+				-0.9
3,754,020	+				+0.9
3,754,063	-				+0.8
3,754,074	+				+1.1
3,754,074	+				-0.1
3,754,074	+				+0.8
3,754,074	+				-0.1
3,754,075	-				-0.8
3,754,113	+		IAI47_17685	0.11	-1.4
3,754,114	-		IAI47_17685	0.11	+1.1
3,754,114	-		IAI47_17685	0.11	+0.5
3,754,366	+		IAI47_17685	0.37	+0.3
3,754,366	+		IAI47_17685	0.37	-2.0
3,754,366	+		IAI47_17685	0.37	-0.9
3,754,366	+		IAI47_17685	0.37	-0.5
3,754,367	-		IAI47_17685	0.37	-2.1
3,754,424	+		IAI47_17685	0.43	-0.7
3,754,424	+		IAI47_17685	0.43	-1.5
3,754,425	-		IAI47_17685	0.43	+0.3
3,754,425	-		IAI47_17685	0.43	+2.7
3,754,613	+		IAI47_17685	0.62	-0.4
3,754,613	+		IAI47_17685	0.62	+1.3
3,754,614	-		IAI47_17685	0.62	+1.0
3,754,769	+		IAI47_17685	0.78	-0.3
3,754,770	-		IAI47_17685	0.79	+0.3
3,754,770	-		IAI47_17685	0.79	-0.6
3,754,785	+		IAI47_17685	0.80	-1.7
3,754,786	-		IAI47_17685	0.80	+0.9
3,754,786	-		IAI47_17685	0.80	-1.2
3,754,786	-		IAI47_17685	0.80	+0.1
3,754,790	+		IAI47_17685	0.81	-0.2
3,754,791	-		IAI47_17685	0.81	-0.2
3,754,860	+		IAI47_17685	0.88	+0.8
3,754,860	+		IAI47_17685	0.88	+0.3
3,754,860	+		IAI47_17685	0.88	-0.0
3,754,860	+		IAI47_17685	0.88	+1.1
3,754,860	+		IAI47_17685	0.88	+0.3
3,754,860	+		IAI47_17685	0.88	-0.1
3,754,861	-		IAI47_17685	0.88	+0.4
3,754,861	-		IAI47_17685	0.88	-1.5
3,754,904	+				+0.1