Strain Fitness in Pantoea sp. MT58 around IAI47_16830

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
3,562,086	+		IAI47_16820	0.53	+0.6
3,562,086	+		IAI47_16820	0.53	+1.5
3,562,086	+		IAI47_16820	0.53	-0.7
3,562,087	-		IAI47_16820	0.54	-1.1
3,562,087	-		IAI47_16820	0.54	-0.1
3,562,087	-		IAI47_16820	0.54	-0.7
3,562,167	+		IAI47_16820	0.64	+1.2
3,562,179	+		IAI47_16820	0.66	+0.3
3,562,180	-		IAI47_16820	0.66	+0.0
3,562,209	+		IAI47_16820	0.70	+1.6
3,562,209	+		IAI47_16820	0.70	+0.5
3,562,209	+		IAI47_16820	0.70	-0.2
3,562,220	+		IAI47_16820	0.71	+0.2
3,562,242	+		IAI47_16820	0.74	+0.3
3,562,243	-		IAI47_16820	0.74	-0.1
3,562,271	+		IAI47_16820	0.78	+0.6
3,562,271	+		IAI47_16820	0.78	-0.2
3,562,272	-		IAI47_16820	0.78	-0.7
3,562,272	-		IAI47_16820	0.78	+0.2
3,562,272	-		IAI47_16820	0.78	+0.6
3,562,272	-		IAI47_16820	0.78	-0.4
3,562,272	-		IAI47_16820	0.78	-1.0
3,562,272	-		IAI47_16820	0.78	-1.7
3,562,272	-		IAI47_16820	0.78	-1.1
3,562,272	-		IAI47_16820	0.78	-0.3
3,562,409	+				-0.2
3,562,409	+				-0.1
3,562,410	-				-0.2
3,562,410	-				+0.8
3,562,424	-				-0.1
3,562,424	-				+0.3
3,562,433	+				-1.2
3,562,433	+				-0.4
3,562,433	+				-0.2
3,562,434	-				+0.3
3,562,434	-				-1.8
3,562,434	-				+0.5
3,562,434	-				-0.0
3,562,494	+				-0.1
3,562,494	+				-0.4
3,562,494	+				+0.3
3,562,494	+				-0.7
3,562,495	-				+1.3
3,562,495	-				+1.1
3,562,495	-				+0.1
3,562,495	-				+0.2
3,562,498	+				-0.3
3,562,498	+				+0.3
3,562,499	-				+0.0
3,562,499	-				+1.1
3,562,499	-				-0.6
3,562,508	+				+1.1
3,562,508	+				-0.5
3,562,509	-				+0.3
3,562,514	+				+0.1
3,562,514	+				-0.2
3,562,514	+				-0.7
3,562,515	-				+0.0
3,562,515	-				+0.5
3,562,515	-				+0.0
3,562,579	+		IAI47_16825	0.19	+1.4
3,562,597	+		IAI47_16825	0.24	+0.6
3,562,598	-		IAI47_16825	0.24	+1.2
3,562,598	-		IAI47_16825	0.24	+0.5
3,562,598	-		IAI47_16825	0.24	+0.1
3,562,609	+		IAI47_16825	0.26	-2.2
3,562,609	+		IAI47_16825	0.26	+0.1
3,562,609	+		IAI47_16825	0.26	+0.3
3,562,609	+		IAI47_16825	0.26	+1.7
3,562,609	+		IAI47_16825	0.26	-0.1
3,562,610	-		IAI47_16825	0.27	-0.7
3,562,610	-		IAI47_16825	0.27	+0.3
3,562,610	-		IAI47_16825	0.27	+1.1
3,562,610	-		IAI47_16825	0.27	-0.1
3,562,610	-		IAI47_16825	0.27	+0.2
3,562,610	-		IAI47_16825	0.27	-1.2
3,562,610	-		IAI47_16825	0.27	+1.8
3,562,610	-		IAI47_16825	0.27	-0.0
3,562,610	-		IAI47_16825	0.27	-0.2
3,562,682	+		IAI47_16825	0.44	+0.3
3,562,682	+		IAI47_16825	0.44	+1.0
3,562,682	+		IAI47_16825	0.44	-0.5
3,562,682	+		IAI47_16825	0.44	+0.4
3,562,683	-		IAI47_16825	0.44	+0.1
3,562,685	+		IAI47_16825	0.44	+0.7
3,562,686	-		IAI47_16825	0.45	+0.2
3,562,747	+		IAI47_16825	0.59	-1.9
3,562,747	+		IAI47_16825	0.59	+1.3
3,562,748	-		IAI47_16825	0.59	+0.4
3,562,748	-		IAI47_16825	0.59	+0.1
3,562,796	+		IAI47_16825	0.71	+0.0
3,562,796	+		IAI47_16825	0.71	+1.7
3,562,823	+		IAI47_16825	0.77	+0.3
3,562,823	+		IAI47_16825	0.77	+1.5
3,562,823	+		IAI47_16825	0.77	+0.1
3,562,823	+		IAI47_16825	0.77	+1.1
3,562,824	-		IAI47_16825	0.77	+0.6
3,562,824	-		IAI47_16825	0.77	+2.7
3,562,824	-		IAI47_16825	0.77	-0.1
3,562,824	-		IAI47_16825	0.77	+1.3
3,562,825	+		IAI47_16825	0.78	-0.9
3,562,825	+		IAI47_16825	0.78	-0.7
3,562,826	-		IAI47_16825	0.78	-1.7
3,562,826	-		IAI47_16825	0.78	-0.2
3,562,869	-		IAI47_16825	0.88	+1.3
3,562,869	-		IAI47_16825	0.88	+1.0
3,562,869	-		IAI47_16825	0.88	-0.5
3,562,903	-				+0.1
3,562,903	-				+0.7
3,562,912	+				+0.3
3,562,912	+				+1.7
3,562,912	+				-1.2
3,562,912	+				-1.1
3,562,912	+				-0.9
3,562,912	+				+0.9
3,562,913	-				+1.1
3,562,913	-				+0.3
3,562,913	-				+0.9
3,562,913	-				+0.1
3,562,913	-				+0.8
3,562,913	-				+0.7
3,562,913	-				+1.2
3,562,947	-				-1.5
3,562,954	+				+0.3
3,562,982	+				-1.8
3,563,000	+				+0.7
3,563,079	+				-2.0
3,563,079	+				-2.0
3,563,079	+				-1.2
3,563,079	+				-4.8
3,563,079	+				-1.7
3,563,079	+				-2.0
3,563,079	+				-3.4
3,563,079	+				-2.0
3,563,080	-				-0.7
3,563,080	-				-1.7
3,563,080	-				-2.5
3,563,080	-				-3.2
3,563,080	-				-1.7
3,563,080	-				-0.7
3,563,080	-				-2.8
3,563,080	-				-3.2
3,563,080	-				-3.0
3,563,080	-				-2.2
3,563,092	+				-1.1
3,563,124	+				-4.6
3,563,168	+				-2.5
3,563,168	+				-3.4
3,563,203	+		IAI47_16830	0.12	-2.7
3,563,203	+		IAI47_16830	0.12	-2.0
3,563,203	+		IAI47_16830	0.12	-4.0
3,563,214	+		IAI47_16830	0.13	-1.2
3,563,214	+		IAI47_16830	0.13	-4.2
3,563,214	+		IAI47_16830	0.13	-1.7
3,563,215	-		IAI47_16830	0.13	-2.0
3,563,254	-		IAI47_16830	0.17	-0.7
3,563,254	-		IAI47_16830	0.17	-1.2
3,563,281	+		IAI47_16830	0.20	-3.5
3,563,281	+		IAI47_16830	0.20	-1.7
3,563,281	+		IAI47_16830	0.20	-2.5
3,563,282	-		IAI47_16830	0.20	-1.0
3,563,305	+		IAI47_16830	0.22	-2.5
3,563,305	+		IAI47_16830	0.22	-2.5
3,563,305	+		IAI47_16830	0.22	-0.7
3,563,305	+		IAI47_16830	0.22	-1.2
3,563,305	+		IAI47_16830	0.22	-2.0
3,563,305	+		IAI47_16830	0.22	-2.5
3,563,305	+		IAI47_16830	0.22	-2.0
3,563,305	+		IAI47_16830	0.22	-3.4
3,563,305	+		IAI47_16830	0.22	-2.0
3,563,305	+		IAI47_16830	0.22	-1.2
3,563,305	+		IAI47_16830	0.22	-2.6
3,563,305	+		IAI47_16830	0.22	-1.2
3,563,306	-		IAI47_16830	0.22	+0.3
3,563,306	-		IAI47_16830	0.22	-0.7
3,563,306	-		IAI47_16830	0.22	-2.0
3,563,337	+		IAI47_16830	0.25	-3.8
3,563,337	+		IAI47_16830	0.25	+0.3
3,563,338	-		IAI47_16830	0.26	-1.7
3,563,338	-		IAI47_16830	0.26	-1.2
3,563,380	+		IAI47_16830	0.30	-0.7
3,563,380	+		IAI47_16830	0.30	-0.7
3,563,380	+		IAI47_16830	0.30	-4.1
3,563,380	+		IAI47_16830	0.30	-4.2
3,563,380	+		IAI47_16830	0.30	+0.3
3,563,381	-		IAI47_16830	0.30	-2.5
3,563,381	-		IAI47_16830	0.30	-2.5
3,563,381	-		IAI47_16830	0.30	-3.0
3,563,381	-		IAI47_16830	0.30	-3.5
3,563,381	-		IAI47_16830	0.30	-3.1
3,563,381	-		IAI47_16830	0.30	-0.7
3,563,381	-		IAI47_16830	0.30	-3.5
3,563,381	-		IAI47_16830	0.30	-3.7
3,563,381	-		IAI47_16830	0.30	-2.2
3,563,381	-		IAI47_16830	0.30	-1.7
3,563,381	-		IAI47_16830	0.30	-2.0
3,563,388	+		IAI47_16830	0.30	-1.7
3,563,388	+		IAI47_16830	0.30	-4.6
3,563,388	+		IAI47_16830	0.30	-0.7
3,563,395	+		IAI47_16830	0.31	-3.1
3,563,470	-		IAI47_16830	0.39	-1.7
3,563,560	+		IAI47_16830	0.47	-2.8
3,563,560	+		IAI47_16830	0.47	-1.2
3,563,561	-		IAI47_16830	0.48	-3.9
3,563,589	+		IAI47_16830	0.50	-3.5
3,563,589	+		IAI47_16830	0.50	+0.3
3,563,590	-		IAI47_16830	0.50	-1.7
3,563,590	-		IAI47_16830	0.50	-1.7
3,563,590	-		IAI47_16830	0.50	+0.3
3,563,595	+		IAI47_16830	0.51	-3.6
3,563,595	+		IAI47_16830	0.51	-3.7
3,563,595	+		IAI47_16830	0.51	+1.3
3,563,595	+		IAI47_16830	0.51	-1.8
3,563,596	-		IAI47_16830	0.51	+1.3
3,563,596	-		IAI47_16830	0.51	-3.7
3,563,596	-		IAI47_16830	0.51	-2.5
3,563,596	-		IAI47_16830	0.51	-3.6
3,563,596	-		IAI47_16830	0.51	-2.2
3,563,596	-		IAI47_16830	0.51	-3.0
3,563,596	-		IAI47_16830	0.51	-1.5
3,563,596	-		IAI47_16830	0.51	-1.0
3,563,596	-		IAI47_16830	0.51	-3.9
3,563,733	+		IAI47_16830	0.65	-0.9
3,563,733	+		IAI47_16830	0.65	-3.1
3,563,733	+		IAI47_16830	0.65	-4.8
3,563,733	+		IAI47_16830	0.65	-3.2
3,563,733	+		IAI47_16830	0.65	-2.2
3,563,734	-		IAI47_16830	0.65	-3.1
3,563,763	+		IAI47_16830	0.68	-2.2
3,563,763	+		IAI47_16830	0.68	-0.7
3,563,764	-		IAI47_16830	0.68	-0.7
3,563,764	-		IAI47_16830	0.68	-1.8
3,563,767	+		IAI47_16830	0.68	-5.2
3,563,821	-		IAI47_16830	0.73	-3.1
3,563,840	-		IAI47_16830	0.75	-3.2
3,563,886	+		IAI47_16830	0.80	-1.0
3,563,887	-		IAI47_16830	0.80	-3.4
3,563,956	+		IAI47_16830	0.87	-1.2
3,563,956	+		IAI47_16830	0.87	-2.5
3,563,956	+		IAI47_16830	0.87	-2.5
3,563,956	+		IAI47_16830	0.87	-3.0
3,563,957	-		IAI47_16830	0.87	-3.1
3,563,957	-		IAI47_16830	0.87	-2.2
3,563,957	-		IAI47_16830	0.87	-3.6
3,564,052	-				-4.0
3,564,052	-				+0.3
3,564,088	+				+1.2
3,564,126	+				+0.9
3,564,126	+				+0.3
3,564,127	-				-0.2
3,564,127	-				-0.9
3,564,149	+				+0.3
3,564,149	+				+0.5
3,564,149	+				-1.5
3,564,150	-				-1.7
3,564,151	+				-0.4
3,564,151	+				-0.4
3,564,336	+				-1.5
3,564,481	+				-1.1
3,564,482	-				-1.4
3,564,482	-				-0.3
3,564,622	+				-1.9
3,564,622	+				-3.5
3,564,625	+				-2.2
3,564,625	+				+1.3
3,564,700	-				+0.3
3,564,731	+				+1.3
3,564,731	+				-0.7
3,564,731	+				-0.3
3,564,731	+				-0.9
3,564,732	-				+0.3
3,564,732	-				+0.3
3,564,732	-				-1.2
3,564,786	+				-0.1
3,564,786	+				+0.3
3,564,801	+				-0.5
3,564,801	+				-1.7
3,564,802	-				+0.0
3,564,802	-				-1.7
3,564,802	-				+1.1
3,564,883	+		IAI47_16835	0.13	+0.0
3,564,883	+		IAI47_16835	0.13	-1.0
3,564,884	-		IAI47_16835	0.14	+0.3
3,564,913	-		IAI47_16835	0.16	-0.4
3,564,913	-		IAI47_16835	0.16	-0.1
3,564,995	+		IAI47_16835	0.23	-0.8
3,564,995	+		IAI47_16835	0.23	-2.7
3,564,995	+		IAI47_16835	0.23	-1.1
3,564,995	+		IAI47_16835	0.23	-0.2
3,564,995	+		IAI47_16835	0.23	+0.6
3,564,996	-		IAI47_16835	0.23	-0.8
3,564,996	-		IAI47_16835	0.23	+0.1
3,564,996	-		IAI47_16835	0.23	+0.1
3,564,996	-		IAI47_16835	0.23	+1.3
3,564,997	+		IAI47_16835	0.23	-0.8
3,564,997	+		IAI47_16835	0.23	-0.3
3,564,997	+		IAI47_16835	0.23	+0.7
3,565,063	-		IAI47_16835	0.28	+0.8