Strain Fitness in Pantoea sp. MT58 around IAI47_12040

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
2,549,425	+				-0.5
2,549,426	-				-2.0
2,549,438	-				-1.7
2,549,497	+				-2.3
2,549,498	-				-0.2
2,549,498	-				-0.0
2,549,498	-				+1.0
2,549,498	-				-0.4
2,549,507	+				+0.3
2,549,507	+				-1.1
2,549,507	+				+0.3
2,549,508	-				-1.1
2,549,508	-				+0.3
2,549,529	+				-0.2
2,549,529	+				-0.3
2,549,529	+				-1.3
2,549,530	-				-0.9
2,549,541	+				+1.9
2,549,541	+				+0.3
2,549,541	+				+0.3
2,549,541	+				-1.3
2,549,541	+				-0.3
2,549,541	+				+1.4
2,549,541	+				-0.7
2,549,541	+				-0.7
2,549,541	+				-1.4
2,549,541	+				-1.7
2,549,541	+				-0.7
2,549,541	+				+2.1
2,549,541	+				-0.5
2,549,541	+				+1.0
2,549,541	+				-0.2
2,549,542	-				-0.9
2,549,542	-				+0.6
2,549,542	-				-0.0
2,549,542	-				+0.6
2,549,542	-				-1.3
2,549,542	-				-1.1
2,549,542	-				-1.5
2,549,543	+				+1.3
2,549,544	-				-0.0
2,549,544	-				+2.9
2,549,544	-				+1.6
2,549,544	-				-1.1
2,549,544	-				+0.7
2,549,544	-				+1.2
2,549,559	+				-0.7
2,549,563	+				-2.3
2,549,578	-				+1.9
2,549,601	+				+1.1
2,549,601	+				-0.6
2,549,602	-				+0.3
2,549,602	-				+0.3
2,549,602	-				-0.9
2,549,613	+				-2.0
2,549,614	-				-0.9
2,549,677	+		IAI47_12035	0.11	-0.7
2,549,677	+		IAI47_12035	0.11	-0.9
2,549,678	-		IAI47_12035	0.11	+1.1
2,549,678	-		IAI47_12035	0.11	+0.9
2,549,681	-		IAI47_12035	0.12	-0.2
2,549,690	+		IAI47_12035	0.13	+0.7
2,549,690	+		IAI47_12035	0.13	-0.2
2,549,691	-		IAI47_12035	0.13	+2.1
2,549,709	+		IAI47_12035	0.15	+0.2
2,549,709	+		IAI47_12035	0.15	+0.4
2,549,710	-		IAI47_12035	0.16	+0.5
2,549,710	-		IAI47_12035	0.16	+3.1
2,549,712	-		IAI47_12035	0.16	+1.9
2,549,712	-		IAI47_12035	0.16	+0.8
2,549,731	-		IAI47_12035	0.18	+0.3
2,549,756	+		IAI47_12035	0.21	-0.0
2,549,756	+		IAI47_12035	0.21	+0.9
2,549,756	+		IAI47_12035	0.21	-0.3
2,549,756	+		IAI47_12035	0.21	-0.8
2,549,756	+		IAI47_12035	0.21	-0.9
2,549,757	-		IAI47_12035	0.21	-0.4
2,549,757	-		IAI47_12035	0.21	+0.7
2,549,757	-		IAI47_12035	0.21	+1.3
2,549,798	+		IAI47_12035	0.27	+0.5
2,549,798	+		IAI47_12035	0.27	+1.0
2,549,798	+		IAI47_12035	0.27	-0.7
2,549,799	-		IAI47_12035	0.27	+0.7
2,549,799	-		IAI47_12035	0.27	-1.7
2,549,799	-		IAI47_12035	0.27	-0.9
2,549,799	-		IAI47_12035	0.27	-0.1
2,549,815	+		IAI47_12035	0.29	+1.6
2,549,861	+		IAI47_12035	0.35	+1.0
2,549,861	+		IAI47_12035	0.35	+0.3
2,549,861	+		IAI47_12035	0.35	-0.5
2,549,861	+		IAI47_12035	0.35	-1.0
2,549,861	+		IAI47_12035	0.35	-0.2
2,549,861	+		IAI47_12035	0.35	-0.1
2,549,861	+		IAI47_12035	0.35	+0.0
2,549,862	-		IAI47_12035	0.35	+0.7
2,549,862	-		IAI47_12035	0.35	-0.2
2,549,862	-		IAI47_12035	0.35	+0.3
2,549,862	-		IAI47_12035	0.35	+0.9
2,549,967	+		IAI47_12035	0.48	+0.3
2,549,967	+		IAI47_12035	0.48	-0.5
2,549,967	+		IAI47_12035	0.48	+1.7
2,549,967	+		IAI47_12035	0.48	+0.3
2,549,967	+		IAI47_12035	0.48	+0.7
2,549,967	+		IAI47_12035	0.48	-0.3
2,549,968	-		IAI47_12035	0.48	+0.5
2,549,989	-		IAI47_12035	0.51	+1.0
2,549,997	+		IAI47_12035	0.52	+0.5
2,549,997	+		IAI47_12035	0.52	+0.4
2,549,997	+		IAI47_12035	0.52	+0.1
2,550,030	+		IAI47_12035	0.56	+1.0
2,550,030	+		IAI47_12035	0.56	-0.2
2,550,030	+		IAI47_12035	0.56	-1.3
2,550,030	+		IAI47_12035	0.56	+0.7
2,550,030	+		IAI47_12035	0.56	-0.1
2,550,030	+		IAI47_12035	0.56	-0.3
2,550,030	+		IAI47_12035	0.56	-0.9
2,550,030	+		IAI47_12035	0.56	-0.5
2,550,030	+		IAI47_12035	0.56	+0.0
2,550,031	-		IAI47_12035	0.56	-0.6
2,550,031	-		IAI47_12035	0.56	-1.3
2,550,031	-		IAI47_12035	0.56	+0.0
2,550,078	-		IAI47_12035	0.62	+0.5
2,550,083	+		IAI47_12035	0.63	+0.6
2,550,155	+		IAI47_12035	0.72	+0.7
2,550,155	+		IAI47_12035	0.72	-1.0
2,550,155	+		IAI47_12035	0.72	+1.9
2,550,155	+		IAI47_12035	0.72	+0.5
2,550,156	-		IAI47_12035	0.72	-0.9
2,550,156	-		IAI47_12035	0.72	+0.2
2,550,156	-		IAI47_12035	0.72	+1.7
2,550,262	-		IAI47_12035	0.85	-0.1
2,550,297	+		IAI47_12035	0.90	-0.3
2,550,373	-				+0.3
2,550,373	-				-0.8
2,550,373	-				+0.9
2,550,373	-				+0.3
2,550,378	+				+1.9
2,550,379	-				-1.0
2,550,379	-				-0.0
2,550,379	-				+0.6
2,550,379	-				-1.9
2,550,379	-				-1.0
2,550,379	-				+1.3
2,550,379	-				-0.7
2,550,379	-				+1.7
2,550,382	+				+0.1
2,550,382	+				+0.4
2,550,383	-				-1.5
2,550,383	-				+0.1
2,550,383	-				+0.5
2,550,383	-				-0.1
2,550,383	-				+0.4
2,550,392	+				-0.9
2,550,392	+				-1.3
2,550,393	-				-1.0
2,550,398	+				+0.7
2,550,421	+				+0.0
2,550,422	-				+0.4
2,550,422	-				-0.9
2,552,089	-				-2.0
2,552,089	-				+1.0
2,552,089	-				+1.9
2,552,089	-				-0.8
2,552,089	-				-0.3
2,552,089	-				+4.4
2,552,089	-				-0.1
2,552,089	-				+1.9
2,552,089	-				-0.7
2,552,089	-				-1.3
2,552,089	-				-0.7
2,552,089	-				+0.0
2,552,089	-				-0.7
2,552,089	-				+1.1
2,552,089	-				+1.3
2,552,118	-		IAI47_12050	0.11	-0.9
2,552,118	-		IAI47_12050	0.11	+1.1
2,552,124	-		IAI47_12050	0.11	-0.1
2,552,124	-		IAI47_12050	0.11	-0.1
2,552,124	-		IAI47_12050	0.11	-0.4
2,552,124	-		IAI47_12050	0.11	-0.0
2,552,124	-		IAI47_12050	0.11	-0.8
2,552,211	-		IAI47_12050	0.20	+0.7
2,552,211	-		IAI47_12050	0.20	+0.8
2,552,211	-		IAI47_12050	0.20	+0.3
2,552,215	-		IAI47_12050	0.20	-0.0
2,552,215	-		IAI47_12050	0.20	-0.5
2,552,215	-		IAI47_12050	0.20	-0.0
2,552,220	-		IAI47_12050	0.21	-0.1
2,552,220	-		IAI47_12050	0.21	+0.6
2,552,220	-		IAI47_12050	0.21	+0.9
2,552,263	-		IAI47_12050	0.25	+0.3
2,552,263	-		IAI47_12050	0.25	+2.0
2,552,265	-		IAI47_12050	0.25	+0.5
2,552,265	-		IAI47_12050	0.25	-0.7
2,552,265	-		IAI47_12050	0.25	+0.3
2,552,265	-		IAI47_12050	0.25	+0.3
2,552,265	-		IAI47_12050	0.25	-1.3
2,552,265	-		IAI47_12050	0.25	+1.3
2,552,265	-		IAI47_12050	0.25	+0.8
2,552,265	-		IAI47_12050	0.25	-0.3
2,552,265	-		IAI47_12050	0.25	-1.1
2,552,283	-		IAI47_12050	0.27	+0.9
2,552,283	-		IAI47_12050	0.27	-1.0
2,552,283	-		IAI47_12050	0.27	-0.9
2,552,283	-		IAI47_12050	0.27	-0.9
2,552,332	-		IAI47_12050	0.32	-0.9
2,552,335	-		IAI47_12050	0.32	-0.2
2,552,335	-		IAI47_12050	0.32	+0.1