Strain Fitness in Pantoea sp. MT58 around IAI47_06110

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,241,344	+		IAI47_06105	0.37	-0.0
1,241,385	-		IAI47_06105	0.40	-0.1
1,241,425	+		IAI47_06105	0.43	-0.3
1,241,426	-		IAI47_06105	0.43	+1.3
1,241,426	-		IAI47_06105	0.43	+0.8
1,241,432	+		IAI47_06105	0.44	-1.0
1,241,432	+		IAI47_06105	0.44	+0.2
1,241,432	+		IAI47_06105	0.44	-0.2
1,241,432	+		IAI47_06105	0.44	+1.3
1,241,432	+		IAI47_06105	0.44	-0.1
1,241,433	-		IAI47_06105	0.44	+0.6
1,241,433	-		IAI47_06105	0.44	-1.2
1,241,433	-		IAI47_06105	0.44	-0.8
1,241,435	+		IAI47_06105	0.44	-0.2
1,241,435	+		IAI47_06105	0.44	-0.5
1,241,435	+		IAI47_06105	0.44	+0.3
1,241,435	+		IAI47_06105	0.44	+3.6
1,241,436	-		IAI47_06105	0.44	+0.3
1,241,470	+		IAI47_06105	0.47	+0.3
1,241,470	+		IAI47_06105	0.47	+0.3
1,241,470	+		IAI47_06105	0.47	-0.3
1,241,471	-		IAI47_06105	0.47	+0.7
1,241,471	-		IAI47_06105	0.47	+0.1
1,241,471	-		IAI47_06105	0.47	+0.2
1,241,508	+		IAI47_06105	0.50	+0.6
1,241,508	+		IAI47_06105	0.50	+0.1
1,241,508	+		IAI47_06105	0.50	+0.5
1,241,508	+		IAI47_06105	0.50	+0.6
1,241,509	-		IAI47_06105	0.50	+0.3
1,241,509	-		IAI47_06105	0.50	-0.1
1,241,627	+		IAI47_06105	0.60	+0.8
1,241,628	-		IAI47_06105	0.60	-1.0
1,241,628	-		IAI47_06105	0.60	+0.8
1,241,628	-		IAI47_06105	0.60	+0.9
1,241,634	+		IAI47_06105	0.61	-1.3
1,241,649	+		IAI47_06105	0.62	+1.2
1,241,649	+		IAI47_06105	0.62	-0.7
1,241,649	+		IAI47_06105	0.62	+1.1
1,241,649	+		IAI47_06105	0.62	-1.4
1,241,649	+		IAI47_06105	0.62	+2.8
1,241,650	-		IAI47_06105	0.62	+0.7
1,241,650	-		IAI47_06105	0.62	-0.4
1,241,683	+		IAI47_06105	0.65	+0.5
1,241,683	+		IAI47_06105	0.65	+0.8
1,241,683	+		IAI47_06105	0.65	+0.3
1,241,683	+		IAI47_06105	0.65	-1.3
1,241,683	+		IAI47_06105	0.65	-0.8
1,241,683	+		IAI47_06105	0.65	-0.4
1,241,684	-		IAI47_06105	0.65	-0.7
1,241,684	-		IAI47_06105	0.65	+0.7
1,241,818	+		IAI47_06105	0.76	+1.7
1,241,838	+		IAI47_06105	0.77	-0.4
1,241,838	+		IAI47_06105	0.77	-0.9
1,241,838	+		IAI47_06105	0.77	+0.8
1,241,838	+		IAI47_06105	0.77	-1.0
1,241,838	+		IAI47_06105	0.77	-0.0
1,241,838	+		IAI47_06105	0.77	-0.8
1,241,839	-		IAI47_06105	0.78	+0.0
1,241,839	-		IAI47_06105	0.78	+0.9
1,241,840	+		IAI47_06105	0.78	-0.7
1,241,840	+		IAI47_06105	0.78	-0.2
1,241,840	+		IAI47_06105	0.78	-0.0
1,241,840	+		IAI47_06105	0.78	+0.3
1,241,840	+		IAI47_06105	0.78	-0.2
1,241,840	+		IAI47_06105	0.78	+0.6
1,241,840	+		IAI47_06105	0.78	+0.2
1,242,085	+				-2.0
1,242,085	+				+1.2
1,242,095	+				-0.3
1,242,095	+				+0.3
1,242,095	+				-0.0
1,242,096	-				-0.2
1,242,096	-				-1.1
1,242,096	-				-1.5
1,242,096	-				+0.3
1,242,096	-				-0.5
1,242,114	+				-0.7
1,242,125	-				-0.3
1,242,130	+				-0.7
1,242,131	-				-0.3
1,242,177	+				+1.3
1,242,177	+				-0.0
1,242,177	+				+0.3
1,242,177	+				+0.3
1,242,177	+				-1.9
1,242,177	+				+0.3
1,242,177	+				+0.9
1,242,177	+				-0.3
1,242,178	-				+0.7
1,242,178	-				+1.2
1,242,178	-				-1.7
1,242,178	-				+1.7
1,242,178	-				+0.1
1,242,178	-				+0.6
1,242,178	-				+0.5
1,242,230	-				+0.3
1,242,267	+				-1.3
1,242,268	-				+0.3
1,242,336	-				-0.0
1,242,389	+		IAI47_06110	0.17	-0.5
1,242,395	+		IAI47_06110	0.18	+1.1
1,242,395	+		IAI47_06110	0.18	-0.4
1,242,395	+		IAI47_06110	0.18	-0.5
1,242,396	-		IAI47_06110	0.18	+0.1
1,242,399	+		IAI47_06110	0.18	+0.9
1,242,399	+		IAI47_06110	0.18	-0.1
1,242,399	+		IAI47_06110	0.18	-0.9
1,242,399	+		IAI47_06110	0.18	+1.1
1,242,399	+		IAI47_06110	0.18	+0.3
1,242,400	-		IAI47_06110	0.18	+0.1
1,242,400	-		IAI47_06110	0.18	-0.4
1,242,417	+		IAI47_06110	0.20	-0.3
1,242,417	+		IAI47_06110	0.20	-1.6
1,242,417	+		IAI47_06110	0.20	+0.6
1,242,417	+		IAI47_06110	0.20	+0.3
1,242,417	+		IAI47_06110	0.20	-1.2
1,242,418	-		IAI47_06110	0.21	-2.0
1,242,418	-		IAI47_06110	0.21	+1.2
1,242,418	-		IAI47_06110	0.21	-0.7
1,242,418	-		IAI47_06110	0.21	-0.1
1,242,424	+		IAI47_06110	0.21	+0.1
1,242,424	+		IAI47_06110	0.21	-0.4
1,242,424	+		IAI47_06110	0.21	+2.1
1,242,424	+		IAI47_06110	0.21	-1.3
1,242,424	+		IAI47_06110	0.21	-0.7
1,242,425	-		IAI47_06110	0.21	+0.3
1,242,425	-		IAI47_06110	0.21	-0.5
1,242,425	-		IAI47_06110	0.21	+1.3
1,242,425	-		IAI47_06110	0.21	+0.8
1,242,453	+		IAI47_06110	0.25	-0.1
1,242,453	+		IAI47_06110	0.25	-0.7
1,242,454	-		IAI47_06110	0.25	-0.1
1,242,454	-		IAI47_06110	0.25	+1.6
1,242,454	-		IAI47_06110	0.25	+0.7
1,242,454	-		IAI47_06110	0.25	+1.7
1,242,454	-		IAI47_06110	0.25	+0.9
1,242,473	+		IAI47_06110	0.28	-2.4
1,242,473	+		IAI47_06110	0.28	+1.2
1,242,474	-		IAI47_06110	0.28	-0.9
1,242,560	+		IAI47_06110	0.39	+0.7
1,242,561	-		IAI47_06110	0.39	-0.3
1,242,627	-		IAI47_06110	0.48	+0.8
1,242,672	-		IAI47_06110	0.54	-0.5
1,242,674	+		IAI47_06110	0.54	-0.2
1,242,674	+		IAI47_06110	0.54	+0.2
1,242,674	+		IAI47_06110	0.54	-0.2
1,242,674	+		IAI47_06110	0.54	+1.2
1,242,675	-		IAI47_06110	0.54	+0.9
1,242,675	-		IAI47_06110	0.54	+0.5
1,242,675	-		IAI47_06110	0.54	+0.7
1,242,675	-		IAI47_06110	0.54	+0.3
1,242,675	-		IAI47_06110	0.54	+0.5
1,242,688	-		IAI47_06110	0.56	-0.0
1,242,699	+		IAI47_06110	0.57	+1.8
1,242,700	-		IAI47_06110	0.57	+1.9
1,242,708	+		IAI47_06110	0.58	-0.4
1,242,708	+		IAI47_06110	0.58	-1.3
1,242,708	+		IAI47_06110	0.58	-0.1
1,242,708	+		IAI47_06110	0.58	-0.9
1,242,708	+		IAI47_06110	0.58	-1.8
1,242,708	+		IAI47_06110	0.58	+0.1
1,242,708	+		IAI47_06110	0.58	-2.1
1,242,708	+		IAI47_06110	0.58	-1.6
1,242,708	+		IAI47_06110	0.58	-0.1
1,242,708	+		IAI47_06110	0.58	+0.3
1,242,709	-		IAI47_06110	0.59	+1.9
1,242,709	-		IAI47_06110	0.59	+2.4
1,242,709	-		IAI47_06110	0.59	-0.5
1,242,709	-		IAI47_06110	0.59	-0.4
1,242,709	-		IAI47_06110	0.59	-2.7
1,242,709	-		IAI47_06110	0.59	-0.3
1,242,709	-		IAI47_06110	0.59	+0.8
1,242,726	+		IAI47_06110	0.61	-0.5
1,242,727	-		IAI47_06110	0.61	-0.8
1,242,727	-		IAI47_06110	0.61	-1.7
1,242,737	+		IAI47_06110	0.62	-0.3
1,242,762	+		IAI47_06110	0.65	-1.2
1,242,762	+		IAI47_06110	0.65	-0.0
1,242,763	-		IAI47_06110	0.66	+0.3
1,242,763	-		IAI47_06110	0.66	-0.7
1,242,770	+		IAI47_06110	0.67	+0.5
1,242,778	-		IAI47_06110	0.68	+1.9
1,242,818	+		IAI47_06110	0.73	-0.9
1,242,897	+		IAI47_06110	0.83	-0.8
1,242,898	-		IAI47_06110	0.83	-0.6
1,242,898	-		IAI47_06110	0.83	+1.1
1,242,898	-		IAI47_06110	0.83	-0.4
1,242,898	-		IAI47_06110	0.83	-0.3
1,242,905	+		IAI47_06110	0.84	-0.4
1,242,911	+		IAI47_06110	0.85	+0.3
1,242,919	-		IAI47_06110	0.86	+0.9
1,242,932	+		IAI47_06110	0.88	-0.1
1,242,977	+				+0.4
1,243,011	-				-0.3
1,243,023	+				-0.7
1,243,024	-				-0.6
1,243,097	+				-0.0
1,243,097	+				-1.8
1,243,097	+				-0.0
1,243,098	-				+0.6
1,243,098	-				+0.3
1,243,098	-				+0.9
1,243,150	+				+0.5
1,243,150	+				-1.4
1,243,204	+				-0.4
1,243,204	+				-0.3
1,243,229	+				-0.8
1,243,230	-				-2.8
1,243,230	-				-0.7
1,243,230	-				-0.0
1,243,336	+				+0.3
1,243,336	+				-0.5
1,243,336	+				-0.3
1,243,337	-				+1.3
1,243,337	-				-0.2
1,243,337	-				-0.6
1,243,337	-				+0.3
1,243,353	+				-2.5
1,243,353	+				-2.8
1,243,353	+				-0.7
1,243,353	+				+0.3
1,243,353	+				-0.7
1,243,353	+				-2.5
1,243,353	+				-3.8
1,243,354	-				-2.5
1,243,354	-				+0.3
1,243,357	+				-2.5
1,243,357	+				-1.3
1,243,357	+				-2.0
1,243,358	-				-2.0
1,243,384	+				-2.7
1,243,384	+				-2.9
1,243,385	-				-2.5
1,243,385	-				-2.6
1,243,385	-				-1.7
1,243,385	-				-2.0
1,243,396	+				-3.0
1,243,396	+				-2.0
1,243,397	-				-1.5
1,243,397	-				-1.7
1,243,397	-				-1.7
1,243,402	+				-1.3
1,243,402	+				-2.8
1,243,402	+				-2.3
1,243,402	+				-1.3
1,243,402	+				-1.8
1,243,402	+				-1.7
1,243,402	+				-2.5
1,243,402	+				-1.7
1,243,403	-				-1.7
1,243,403	-				-3.5
1,243,403	-				-2.8
1,243,403	-				+0.3
1,243,403	-				-2.0
1,243,404	+				-3.4
1,243,404	+				-2.5
1,243,404	+				-1.7
1,243,405	+				-2.8
1,243,405	-				-2.0
1,243,405	-				-3.3
1,243,405	-				-3.0
1,243,405	-				-0.3
1,243,405	-				-3.0
1,243,405	-				-2.9
1,243,405	-				-2.7
1,243,405	-				-2.0
1,243,441	+				-1.7
1,243,441	+				-2.5
1,243,442	-				-2.0
1,243,442	-				-2.1
1,243,442	-				-2.2
1,243,442	-				-2.2
1,243,443	+				-0.7
1,243,443	+				-2.5
1,243,443	+				-2.7
1,243,443	+				-1.0
1,243,443	+				-2.3
1,243,444	-				-2.9
1,243,444	-				-2.0
1,243,444	-				-2.5
1,243,444	-				-1.7
1,243,444	-				-0.7
1,243,444	-				-2.7
1,243,444	-				-4.3
1,243,444	-				-2.3
1,243,444	-				-3.8
1,243,444	-				-1.3
1,243,444	-				-3.1
1,243,454	+				-2.0
1,243,454	+				-3.8
1,243,454	+				-0.7
1,243,454	+				-2.7
1,243,454	+				-1.7
1,243,454	+				-1.3
1,243,455	-				-3.0
1,243,471	+				-2.0
1,243,472	-		IAI47_06115	0.10	-2.9
1,243,478	-		IAI47_06115	0.11	-2.0
1,243,478	-		IAI47_06115	0.11	-2.5
1,243,485	+		IAI47_06115	0.11	-1.5
1,243,485	+		IAI47_06115	0.11	-3.2
1,243,485	+		IAI47_06115	0.11	-2.3
1,243,485	+		IAI47_06115	0.11	-1.3
1,243,485	+		IAI47_06115	0.11	-3.3
1,243,485	+		IAI47_06115	0.11	-3.0
1,243,486	-		IAI47_06115	0.11	-2.7
1,243,486	-		IAI47_06115	0.11	+0.3
1,243,486	-		IAI47_06115	0.11	-2.6
1,243,486	-		IAI47_06115	0.11	+0.3
1,243,503	-		IAI47_06115	0.12	-3.1
1,243,528	+		IAI47_06115	0.14	-3.3
1,243,528	+		IAI47_06115	0.14	-2.5
1,243,529	-		IAI47_06115	0.14	-2.5
1,243,534	+		IAI47_06115	0.15	-0.7
1,243,534	+		IAI47_06115	0.15	-0.7
1,243,534	+		IAI47_06115	0.15	-3.5
1,243,534	+		IAI47_06115	0.15	-2.3
1,243,534	+		IAI47_06115	0.15	-3.0
1,243,534	+		IAI47_06115	0.15	-2.0
1,243,534	+		IAI47_06115	0.15	-0.7
1,243,534	+		IAI47_06115	0.15	-2.8
1,243,535	-		IAI47_06115	0.15	-3.2
1,243,535	-		IAI47_06115	0.15	-1.8
1,243,535	-		IAI47_06115	0.15	-1.0
1,243,535	-		IAI47_06115	0.15	-2.0
1,243,535	-		IAI47_06115	0.15	+0.3
1,243,535	-		IAI47_06115	0.15	-1.7
1,243,535	-		IAI47_06115	0.15	-2.0
1,243,535	-		IAI47_06115	0.15	-2.0
1,243,576	+		IAI47_06115	0.18	-1.7
1,243,577	-		IAI47_06115	0.18	-2.4
1,243,605	+		IAI47_06115	0.20	-2.3
1,243,606	-		IAI47_06115	0.20	-0.7
1,243,611	+		IAI47_06115	0.21	-1.7
1,243,611	+		IAI47_06115	0.21	-3.0
1,243,611	+		IAI47_06115	0.21	-3.0
1,243,612	-		IAI47_06115	0.21	-1.8
1,243,612	-		IAI47_06115	0.21	-1.3
1,243,612	-		IAI47_06115	0.21	-3.4
1,243,660	+		IAI47_06115	0.25	-2.0
1,243,660	+		IAI47_06115	0.25	-3.5
1,243,662	+		IAI47_06115	0.25	-2.8
1,243,662	+		IAI47_06115	0.25	-2.5
1,243,662	+		IAI47_06115	0.25	-2.7
1,243,662	+		IAI47_06115	0.25	-2.7
1,243,662	+		IAI47_06115	0.25	-2.3
1,243,662	+		IAI47_06115	0.25	-3.4
1,243,662	+		IAI47_06115	0.25	-1.3
1,243,662	+		IAI47_06115	0.25	-3.0
1,243,662	+		IAI47_06115	0.25	-1.4
1,243,662	+		IAI47_06115	0.25	-2.5
1,243,662	+		IAI47_06115	0.25	-2.8
1,243,662	+		IAI47_06115	0.25	+0.3
1,243,663	-		IAI47_06115	0.25	-0.7
1,243,663	-		IAI47_06115	0.25	-1.7
1,243,725	+		IAI47_06115	0.30	-3.1
1,243,726	-		IAI47_06115	0.30	-2.8
1,243,737	+		IAI47_06115	0.31	-0.3
1,243,738	-		IAI47_06115	0.31	-2.3
1,243,738	-		IAI47_06115	0.31	-2.4
1,243,765	+		IAI47_06115	0.33	-1.5
1,243,766	-		IAI47_06115	0.33	-2.8
1,243,766	-		IAI47_06115	0.33	-0.4
1,243,809	-		IAI47_06115	0.36	-3.0
1,243,809	-		IAI47_06115	0.36	-3.3
1,243,870	+		IAI47_06115	0.41	-1.7
1,243,871	-		IAI47_06115	0.41	-1.7
1,243,903	+		IAI47_06115	0.44	-2.3
1,243,903	+		IAI47_06115	0.44	-1.3
1,243,903	+		IAI47_06115	0.44	-1.7
1,243,903	+		IAI47_06115	0.44	-2.8
1,243,903	+		IAI47_06115	0.44	-3.9
1,243,903	+		IAI47_06115	0.44	-0.7
1,243,904	-		IAI47_06115	0.44	-1.7
1,243,904	-		IAI47_06115	0.44	-2.5
1,243,904	-		IAI47_06115	0.44	-1.0
1,243,905	+		IAI47_06115	0.44	-2.8
1,243,906	-		IAI47_06115	0.44	-3.3
1,243,906	-		IAI47_06115	0.44	-2.7
1,243,906	-		IAI47_06115	0.44	-0.7
1,243,906	-		IAI47_06115	0.44	-5.1
1,243,927	+		IAI47_06115	0.45	-0.7
1,243,928	-		IAI47_06115	0.46	-3.0
1,243,941	+		IAI47_06115	0.47	-2.5
1,243,942	-		IAI47_06115	0.47	+1.3
1,243,942	-		IAI47_06115	0.47	-3.0
1,243,942	-		IAI47_06115	0.47	-2.0
1,243,945	+		IAI47_06115	0.47	-2.3
1,243,945	+		IAI47_06115	0.47	-1.3
1,243,945	+		IAI47_06115	0.47	-3.0
1,243,946	-		IAI47_06115	0.47	-1.7
1,243,946	-		IAI47_06115	0.47	-3.6
1,243,946	-		IAI47_06115	0.47	-2.7
1,243,946	-		IAI47_06115	0.47	-1.8
1,243,977	+		IAI47_06115	0.49	-1.8
1,243,977	+		IAI47_06115	0.49	-3.3
1,243,977	+		IAI47_06115	0.49	-2.3
1,243,978	-		IAI47_06115	0.49	-3.0
1,243,978	-		IAI47_06115	0.49	-1.5
1,243,978	-		IAI47_06115	0.49	-3.3
1,243,978	-		IAI47_06115	0.49	-3.3
1,243,978	-		IAI47_06115	0.49	-2.8
1,243,978	-		IAI47_06115	0.49	-2.0
1,244,012	-		IAI47_06115	0.52	-2.3