Strain Fitness in Pantoea sp. MT58 around IAI47_05675

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,189,577	+				-0.7
1,189,578	+				-0.1
1,189,578	+				-0.0
1,189,578	+				-0.3
1,189,578	+				-1.2
1,189,579	-				+1.3
1,189,579	-				+0.9
1,189,579	-				-0.5
1,189,579	-				+0.0
1,189,598	+				+0.0
1,189,598	+				-2.0
1,189,599	-				+1.1
1,189,651	+				+0.1
1,189,666	-				-0.1
1,189,706	+				+0.8
1,189,706	+				-0.7
1,189,706	+				-0.9
1,189,707	-				-0.4
1,189,717	+				+0.9
1,189,717	+				-0.1
1,189,717	+				+0.4
1,189,717	+				+0.1
1,189,718	-				-0.0
1,189,720	+				-1.0
1,189,720	+				+0.2
1,189,720	+				+0.1
1,189,720	+				-0.6
1,189,720	+				+0.8
1,189,737	+				-1.3
1,189,738	-				+0.3
1,189,738	-				-0.4
1,189,767	+				+0.1
1,189,824	+				-0.7
1,189,825	-				-0.3
1,189,825	-				-0.7
1,189,845	-				+1.3
1,189,847	+				-0.3
1,189,856	-				+0.3
1,189,859	+				-0.8
1,189,859	+				+1.4
1,189,859	+				-1.5
1,189,859	+				+1.2
1,189,859	+				+0.1
1,189,860	-				+0.3
1,189,860	-				+1.5
1,189,860	-				-0.1
1,189,860	-				+1.3
1,189,911	+				+1.2
1,189,911	+				+2.3
1,189,912	-				+0.7
1,189,917	+				+0.9
1,189,917	+				-0.1
1,189,918	-				-1.1
1,189,934	+				-0.5
1,189,935	-				+0.1
1,189,935	-				+0.3
1,189,935	-				+0.5
1,189,958	+				-2.3
1,189,958	+				+0.0
1,189,958	+				+1.9
1,189,959	-				-1.3
1,189,968	-				+0.3
1,189,982	-				-0.4
1,189,982	-				+0.6
1,189,982	-				-0.5
1,189,984	+				-0.3
1,189,984	+				+0.7
1,189,984	+				-0.7
1,189,991	+				-0.0
1,189,992	-				+1.5
1,189,992	-				-0.4
1,189,992	-				-0.4
1,189,992	-				+0.1
1,189,993	+				-1.3
1,189,993	+				+0.3
1,189,994	-				+0.8
1,189,994	-				+0.3
1,190,001	+				+1.9
1,190,002	-				-1.1
1,190,002	-				+0.1
1,190,039	+				+0.8
1,190,039	+				+0.3
1,190,039	+				+1.7
1,190,040	-				-0.3
1,190,046	+				-1.0
1,190,046	+				-1.0
1,190,046	+				-0.1
1,190,047	-				-0.3
1,190,047	-				+0.3
1,190,047	-				+1.3
1,190,062	+				+0.3
1,190,103	+				+0.0
1,190,104	-				-0.3
1,190,104	-				-0.5
1,190,104	-				-1.0
1,190,159	+				-1.4
1,190,256	+		IAI47_05670	0.24	-0.0
1,190,257	-		IAI47_05670	0.25	+0.3
1,190,265	+		IAI47_05670	0.29	-0.2
1,190,266	-		IAI47_05670	0.29	+0.6
1,190,289	+		IAI47_05670	0.41	+0.3
1,190,331	+		IAI47_05670	0.62	+1.3
1,190,331	+		IAI47_05670	0.62	+1.6
1,190,332	-		IAI47_05670	0.62	+0.9
1,190,332	-		IAI47_05670	0.62	-0.1
1,190,332	-		IAI47_05670	0.62	+0.4
1,190,338	-		IAI47_05670	0.65	-0.7
1,190,338	-		IAI47_05670	0.65	-1.4
1,190,338	-		IAI47_05670	0.65	-0.5
1,190,338	-		IAI47_05670	0.65	-0.4
1,190,399	+				+0.8
1,190,399	+				-0.2
1,190,399	+				-0.9
1,190,400	-				+1.0
1,190,407	+				-1.7
1,190,407	+				+0.3
1,190,407	+				-1.4
1,190,408	-				+0.1
1,190,408	-				-0.3
1,190,411	+				-0.1
1,190,411	+				+1.2
1,190,411	+				-0.4
1,190,411	+				+0.7
1,190,412	-				-0.3
1,190,412	-				+0.5
1,190,412	-				-0.4
1,190,418	+				+0.3
1,190,418	+				-0.9
1,190,418	+				-1.0
1,190,419	-				-0.8
1,190,419	-				+1.1
1,190,420	+				-1.7
1,190,420	+				+0.3
1,190,420	+				+0.1
1,190,420	+				-0.5
1,190,420	+				+0.1
1,190,421	-				-0.4
1,190,451	+				-0.8
1,190,579	+		IAI47_05675	0.15	-0.1
1,190,579	+		IAI47_05675	0.15	+0.6
1,190,580	-		IAI47_05675	0.16	-0.3
1,190,580	-		IAI47_05675	0.16	+0.4
1,190,580	-		IAI47_05675	0.16	+1.5
1,190,602	+		IAI47_05675	0.20	+0.6
1,190,603	+		IAI47_05675	0.20	+0.3
1,190,603	+		IAI47_05675	0.20	-0.7
1,190,603	+		IAI47_05675	0.20	+0.6
1,190,603	+		IAI47_05675	0.20	+0.3
1,190,604	-		IAI47_05675	0.21	+1.2
1,190,604	-		IAI47_05675	0.21	+0.6
1,190,604	-		IAI47_05675	0.21	+0.5
1,190,604	-		IAI47_05675	0.21	-0.9
1,190,604	-		IAI47_05675	0.21	+0.3
1,190,608	-		IAI47_05675	0.21	+0.0
1,190,608	-		IAI47_05675	0.21	-0.0
1,190,639	+		IAI47_05675	0.28	+0.4
1,190,639	+		IAI47_05675	0.28	-0.4
1,190,661	+		IAI47_05675	0.33	-0.2
1,190,662	-		IAI47_05675	0.33	+1.1
1,190,693	+		IAI47_05675	0.39	-0.6
1,190,714	+		IAI47_05675	0.44	-0.1
1,190,714	+		IAI47_05675	0.44	+0.6
1,190,714	+		IAI47_05675	0.44	-0.3
1,190,728	+		IAI47_05675	0.46	+0.2
1,190,729	-		IAI47_05675	0.47	-0.4
1,190,850	+		IAI47_05675	0.72	+0.3
1,190,850	+		IAI47_05675	0.72	+0.3
1,190,850	+		IAI47_05675	0.72	-0.9
1,190,874	+		IAI47_05675	0.77	-0.3
1,190,874	+		IAI47_05675	0.77	+1.1
1,190,875	-		IAI47_05675	0.77	-0.2
1,190,875	-		IAI47_05675	0.77	-0.4
1,190,875	-		IAI47_05675	0.77	+1.3
1,190,928	-		IAI47_05675	0.88	-0.7
1,190,967	+				+0.8
1,190,967	+				+1.6
1,190,967	+				-0.2
1,190,967	+				+1.0
1,190,968	-				-0.1
1,190,968	-				+0.2
1,190,968	-				+0.1
1,190,968	-				-0.1
1,190,968	-				-0.8
1,190,968	-				-1.4
1,190,968	-				-1.5
1,190,973	+				-0.7
1,190,973	+				+1.5
1,190,973	+				+0.7
1,190,973	+				-0.7
1,190,973	+				+0.3
1,190,973	+				-0.7
1,190,973	+				-0.7
1,190,973	+				-0.3
1,190,973	+				-1.3
1,190,973	+				-1.1
1,190,973	+				+1.3
1,190,974	-				-0.5
1,190,974	-				-0.2
1,190,974	-				+1.1
1,190,974	-				-0.9
1,190,974	-				+0.3
1,190,974	-				-0.3
1,190,974	-				-0.7
1,190,974	-				-0.1
1,190,984	+				+0.1
1,190,984	+				-0.7
1,190,984	+				-0.3
1,190,984	+				-0.4
1,190,984	+				-1.7
1,190,984	+				+0.9
1,190,985	-				+1.1
1,190,985	-				-0.4
1,190,985	-				-1.4
1,190,985	-				+0.0
1,191,017	-				-0.3
1,191,032	+				-0.6
1,191,058	+		IAI47_05680	0.13	+0.3
1,191,058	+		IAI47_05680	0.13	-0.1
1,191,058	+		IAI47_05680	0.13	+0.9
1,191,058	+		IAI47_05680	0.13	-0.2
1,191,058	+		IAI47_05680	0.13	+0.7
1,191,058	+		IAI47_05680	0.13	+0.3
1,191,058	+		IAI47_05680	0.13	-0.4
1,191,058	+		IAI47_05680	0.13	+0.5
1,191,058	+		IAI47_05680	0.13	-0.5
1,191,059	-		IAI47_05680	0.14	+0.3
1,191,059	-		IAI47_05680	0.14	+0.2
1,191,059	-		IAI47_05680	0.14	+1.3
1,191,060	+		IAI47_05680	0.14	-0.2
1,191,060	+		IAI47_05680	0.14	-0.7
1,191,060	+		IAI47_05680	0.14	-0.4
1,191,060	+		IAI47_05680	0.14	-0.4
1,191,061	-		IAI47_05680	0.15	+0.1
1,191,063	-		IAI47_05680	0.16	+0.0
1,191,138	-		IAI47_05680	0.53	+0.9
1,191,140	+		IAI47_05680	0.54	-0.0
1,191,140	+		IAI47_05680	0.54	-1.3
1,191,141	-		IAI47_05680	0.55	-0.3
1,191,141	-		IAI47_05680	0.55	-2.3
1,191,141	-		IAI47_05680	0.55	+0.2
1,191,179	+		IAI47_05680	0.74	+0.3
1,191,211	+		IAI47_05680	0.90	-2.0
1,191,212	-				+1.1
1,191,214	+				-0.3
1,191,214	+				-0.7
1,191,214	+				-0.3
1,191,214	+				+1.3
1,191,215	-				+0.3
1,191,237	+				+1.3
1,191,237	+				+0.1
1,191,237	+				+0.5
1,191,237	+				+0.3
1,191,237	+				+0.3
1,191,238	-				-0.5
1,191,238	-				-0.8
1,191,238	-				-1.5
1,191,262	+		IAI47_05685	0.15	-0.3
1,191,262	+		IAI47_05685	0.15	-0.3
1,191,262	+		IAI47_05685	0.15	-1.0
1,191,262	+		IAI47_05685	0.15	-0.3
1,191,262	+		IAI47_05685	0.15	+0.1
1,191,263	-		IAI47_05685	0.16	-0.5
1,191,263	-		IAI47_05685	0.16	-1.3
1,191,263	-		IAI47_05685	0.16	+0.1
1,191,263	-		IAI47_05685	0.16	+1.1
1,191,263	-		IAI47_05685	0.16	-0.0
1,191,265	+		IAI47_05685	0.16	+0.3
1,191,265	+		IAI47_05685	0.16	-0.8
1,191,265	+		IAI47_05685	0.16	-0.9
1,191,265	+		IAI47_05685	0.16	+1.5
1,191,265	+		IAI47_05685	0.16	+0.5
1,191,265	+		IAI47_05685	0.16	-0.1
1,191,265	+		IAI47_05685	0.16	-0.3
1,191,265	-		IAI47_05685	0.16	-0.3
1,191,266	-		IAI47_05685	0.17	+0.3
1,191,266	-		IAI47_05685	0.17	-0.1
1,191,266	-		IAI47_05685	0.17	+0.5
1,191,276	+		IAI47_05685	0.21	-0.4
1,191,276	+		IAI47_05685	0.21	+1.3
1,191,276	+		IAI47_05685	0.21	+2.1
1,191,277	-		IAI47_05685	0.22	-0.6
1,191,277	-		IAI47_05685	0.22	-1.7
1,191,277	-		IAI47_05685	0.22	+1.9
1,191,315	+		IAI47_05685	0.39	-1.3
1,191,316	-		IAI47_05685	0.39	+0.8
1,191,410	+		IAI47_05685	0.81	+1.9
1,191,411	-		IAI47_05685	0.81	-0.1
1,191,426	+		IAI47_05685	0.88	-0.5
1,191,426	+		IAI47_05685	0.88	+2.0
1,191,427	-		IAI47_05685	0.88	-0.4
1,191,473	-		IAI47_05690	0.12	+0.5
1,191,473	-		IAI47_05690	0.12	+0.1
1,191,549	+		IAI47_05690	0.48	-0.6
1,191,550	-		IAI47_05690	0.49	-1.0
1,191,550	-		IAI47_05690	0.49	-1.0
1,191,552	+		IAI47_05690	0.50	-0.7
1,191,552	+		IAI47_05690	0.50	-0.5
1,191,552	+		IAI47_05690	0.50	-0.6
1,191,552	+		IAI47_05690	0.50	-0.7
1,191,553	-		IAI47_05690	0.50	+0.0
1,191,553	-		IAI47_05690	0.50	-0.1
1,191,565	+		IAI47_05690	0.56	+1.0
1,191,641	+				-0.7
1,191,641	+				+0.3
1,191,642	-				-0.8
1,191,642	-				+0.4
1,191,660	+				-0.2
1,191,661	-				+0.7
1,191,661	-				+1.0
1,191,661	-				-0.9
1,191,695	-				+1.0
1,191,695	-				+0.3
1,191,695	-				-0.5
1,191,711	+				+0.3
1,191,712	-				+0.1
1,191,715	+				+0.9
1,191,731	+				+1.2
1,191,731	+				+0.1
1,191,731	+				+0.8
1,191,731	+				+0.3
1,191,732	-				+0.6
1,191,732	-				-1.3
1,191,732	-				-0.9
1,191,733	+				+1.5
1,191,733	+				-1.8
1,191,734	-				+1.2
1,191,749	+				+0.7
1,191,749	+				+1.3
1,191,750	-				-0.5
1,191,750	-				-1.2
1,191,760	-				+1.9
1,191,777	+		IAI47_05695	0.13	+0.9
1,191,777	+		IAI47_05695	0.13	+0.3
1,191,796	+		IAI47_05695	0.17	-1.3
1,191,806	-		IAI47_05695	0.19	+1.1
1,191,806	-		IAI47_05695	0.19	+0.6
1,191,820	+		IAI47_05695	0.22	+0.8
1,191,820	+		IAI47_05695	0.22	+1.9
1,191,821	-		IAI47_05695	0.22	+0.5
1,191,821	-		IAI47_05695	0.22	-0.4
1,191,827	+		IAI47_05695	0.23	-0.5
1,191,827	+		IAI47_05695	0.23	+1.6
1,191,827	+		IAI47_05695	0.23	-2.0
1,191,827	+		IAI47_05695	0.23	+0.5
1,191,827	+		IAI47_05695	0.23	+0.3
1,191,828	-		IAI47_05695	0.23	+0.5
1,191,828	-		IAI47_05695	0.23	+0.1
1,191,828	-		IAI47_05695	0.23	-0.1
1,191,828	-		IAI47_05695	0.23	+0.6
1,191,828	-		IAI47_05695	0.23	+0.1
1,191,831	+		IAI47_05695	0.24	+0.7
1,191,831	+		IAI47_05695	0.24	-0.4
1,191,831	+		IAI47_05695	0.24	+1.1
1,191,831	+		IAI47_05695	0.24	+0.0
1,191,832	-		IAI47_05695	0.24	-0.4
1,191,832	-		IAI47_05695	0.24	-0.4
1,191,832	-		IAI47_05695	0.24	-0.4
1,191,832	-		IAI47_05695	0.24	+1.1
1,191,832	-		IAI47_05695	0.24	+0.1
1,191,832	-		IAI47_05695	0.24	+0.7
1,191,832	-		IAI47_05695	0.24	+0.3
1,191,832	-		IAI47_05695	0.24	+1.9
1,191,855	-		IAI47_05695	0.29	-0.3
1,191,855	-		IAI47_05695	0.29	+0.3
1,191,855	-		IAI47_05695	0.29	-1.3
1,191,855	-		IAI47_05695	0.29	-0.3
1,191,855	-		IAI47_05695	0.29	+0.2
1,191,855	-		IAI47_05695	0.29	+0.5
1,191,866	+		IAI47_05695	0.31	+0.6
1,191,866	+		IAI47_05695	0.31	-0.1
1,191,866	+		IAI47_05695	0.31	+2.1
1,191,867	-		IAI47_05695	0.31	-0.4
1,191,867	-		IAI47_05695	0.31	-0.9
1,191,893	+		IAI47_05695	0.36	+0.0
1,191,893	+		IAI47_05695	0.36	+0.3
1,191,899	+		IAI47_05695	0.37	+0.0
1,191,899	+		IAI47_05695	0.37	-0.4
1,191,899	+		IAI47_05695	0.37	+0.7
1,191,900	-		IAI47_05695	0.37	-0.6
1,191,900	-		IAI47_05695	0.37	-0.2
1,191,900	-		IAI47_05695	0.37	+0.3
1,191,900	-		IAI47_05695	0.37	-0.3
1,191,901	+		IAI47_05695	0.38	+0.8
1,191,901	+		IAI47_05695	0.38	+0.3
1,191,914	+		IAI47_05695	0.40	+0.3
1,191,929	+		IAI47_05695	0.43	+1.8
1,191,930	-		IAI47_05695	0.43	+0.2
1,191,946	-		IAI47_05695	0.47	+1.0
1,191,946	-		IAI47_05695	0.47	-3.6
1,191,946	-		IAI47_05695	0.47	+0.0
1,191,946	-		IAI47_05695	0.47	+0.4
1,191,959	+		IAI47_05695	0.49	+0.0
1,191,959	+		IAI47_05695	0.49	+1.9
1,191,960	-		IAI47_05695	0.49	-1.0
1,191,960	-		IAI47_05695	0.49	-3.3
1,191,960	-		IAI47_05695	0.49	+0.1