Strain Fitness in Pantoea sp. MT58 around IAI47_05365

Experiment: Ying_Others16 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 3
1,137,308	-				-0.3
1,137,308	-				-0.2
1,137,308	-				+0.3
1,137,308	-				-0.0
1,137,335	-				-0.3
1,137,335	-				-0.5
1,137,335	-				-1.4
1,137,335	-				-0.9
1,137,335	-				-1.3
1,137,353	+				-0.1
1,137,353	+				+0.9
1,137,353	+				+0.7
1,137,354	-				+1.9
1,137,354	-				+0.3
1,137,363	-				+0.3
1,137,401	+				+1.3
1,137,402	-				+0.7
1,137,464	-		IAI47_05365	0.11	-2.5
1,137,486	+		IAI47_05365	0.14	+0.3
1,137,486	+		IAI47_05365	0.14	+0.0
1,137,489	+		IAI47_05365	0.14	-0.7
1,137,489	+		IAI47_05365	0.14	+1.3
1,137,490	-		IAI47_05365	0.14	+1.2
1,137,490	-		IAI47_05365	0.14	+1.1
1,137,490	-		IAI47_05365	0.14	+2.3
1,137,536	-		IAI47_05365	0.20	+0.0
1,137,536	-		IAI47_05365	0.20	-1.3
1,137,568	-		IAI47_05365	0.23	-1.5
1,137,674	+		IAI47_05365	0.36	-0.5
1,137,674	+		IAI47_05365	0.36	+0.7
1,137,674	+		IAI47_05365	0.36	+0.3
1,137,674	+		IAI47_05365	0.36	-0.7
1,137,674	+		IAI47_05365	0.36	+1.6
1,137,674	+		IAI47_05365	0.36	+3.8
1,137,674	+		IAI47_05365	0.36	+2.3
1,137,675	-		IAI47_05365	0.36	-0.6
1,137,675	-		IAI47_05365	0.36	-0.7
1,137,675	-		IAI47_05365	0.36	+0.7
1,137,740	+		IAI47_05365	0.44	+1.6
1,137,771	+		IAI47_05365	0.47	+1.3
1,137,784	+		IAI47_05365	0.49	+2.7
1,137,785	-		IAI47_05365	0.49	-0.3
1,137,785	-		IAI47_05365	0.49	+1.5
1,137,785	-		IAI47_05365	0.49	+0.7
1,137,813	+		IAI47_05365	0.52	-0.1
1,137,814	-		IAI47_05365	0.52	-0.2
1,137,814	-		IAI47_05365	0.52	-0.5
1,137,837	+		IAI47_05365	0.55	-1.8
1,137,838	-		IAI47_05365	0.55	-1.3
1,137,838	-		IAI47_05365	0.55	-1.1
1,137,838	-		IAI47_05365	0.55	-1.2
1,137,838	-		IAI47_05365	0.55	-1.3
1,137,881	+		IAI47_05365	0.60	+0.2
1,137,882	-		IAI47_05365	0.61	+0.6
1,138,092	+		IAI47_05365	0.85	+0.3
1,138,092	+		IAI47_05365	0.85	-0.7
1,138,092	+		IAI47_05365	0.85	+0.3
1,138,093	-		IAI47_05365	0.85	+0.9
1,138,093	-		IAI47_05365	0.85	+0.9
1,138,147	+				+0.8
1,138,177	+				+0.5
1,138,177	+				-0.5
1,138,177	+				+0.3
1,138,203	+				+1.1
1,138,204	-				-0.8
1,138,204	-				+0.3
1,138,204	-				-0.7
1,138,204	-				+3.3
1,138,204	-				+0.7
1,138,204	-				+0.3
1,138,249	+				+0.3
1,138,249	+				-0.7
1,138,250	-				-1.6
1,138,250	-				-0.5
1,138,251	+				+0.1
1,138,251	+				+0.3
1,138,251	+				+0.5
1,138,252	-				+1.3
1,138,252	-				-0.0
1,138,252	-				+1.8
1,138,252	-				+0.3
1,138,256	+				-1.0
1,138,256	+				-1.1
1,138,256	+				+0.8
1,138,256	+				+0.2
1,138,256	+				-0.5
1,138,257	-				+0.3
1,138,257	-				-0.7
1,138,257	-				-0.0
1,138,257	-				+0.9
1,138,298	+				+0.7
1,138,298	+				+0.6
1,138,298	+				-0.7
1,138,298	+				+3.4
1,138,299	-				-0.2
1,138,299	-				+2.1
1,138,299	-				+2.1
1,138,299	-				-0.1
1,138,305	+				+0.3
1,138,305	+				+0.7
1,138,306	-				+0.7
1,138,306	-				+0.9
1,138,306	-				-0.1
1,138,340	+				+1.5
1,138,340	+				-0.3
1,138,341	-				-0.3
1,138,341	-				-0.1
1,138,387	+				+0.3
1,138,387	+				+0.1
1,138,387	+				-0.3
1,138,388	-				+1.9
1,138,405	+				-0.2
1,138,405	+				-0.2
1,138,406	-				-0.3
1,138,406	-				+1.3
1,138,406	-				-0.3
1,138,415	+				+0.3
1,138,415	+				+0.3
1,138,416	-				+0.1
1,138,416	-				-0.2
1,138,472	+		IAI47_05370	0.12	+0.1
1,138,473	-		IAI47_05370	0.12	+1.0
1,138,473	-		IAI47_05370	0.12	+1.8
1,138,606	+		IAI47_05370	0.43	-0.3
1,138,607	-		IAI47_05370	0.43	+0.3
1,138,630	+		IAI47_05370	0.49	+0.6
1,138,630	+		IAI47_05370	0.49	+0.1
1,138,631	-		IAI47_05370	0.49	+0.7
1,138,631	-		IAI47_05370	0.49	+0.8
1,138,633	+		IAI47_05370	0.49	+0.2
1,138,633	+		IAI47_05370	0.49	-0.3
1,138,633	+		IAI47_05370	0.49	+0.1
1,138,633	+		IAI47_05370	0.49	-1.0
1,138,654	+		IAI47_05370	0.54	+2.8
1,138,654	+		IAI47_05370	0.54	-1.1
1,138,654	+		IAI47_05370	0.54	+0.3
1,138,775	-		IAI47_05370	0.83	+0.1
1,138,789	+		IAI47_05370	0.86	+0.6
1,138,818	+				-0.3
1,138,818	+				-2.5
1,138,843	+				+0.8
1,138,843	+				-0.5
1,138,844	-				-0.8
1,138,844	-				+0.0
1,138,846	+				-0.7
1,138,846	+				-0.4
1,138,846	+				+0.3
1,138,847	-				-0.7
1,138,847	-				+1.2
1,138,847	-				-0.4
1,138,847	-				+0.5
1,138,877	+				-0.9
1,138,878	-				+0.3
1,138,878	-				+0.3
1,138,878	-				+0.9
1,138,896	+		IAI47_05375	0.12	+0.7
1,138,896	+		IAI47_05375	0.12	-0.3
1,138,896	+		IAI47_05375	0.12	-0.4
1,138,897	-		IAI47_05375	0.13	-0.5
1,138,897	-		IAI47_05375	0.13	+1.6
1,138,897	-		IAI47_05375	0.13	-0.8
1,139,010	-		IAI47_05375	0.37	+0.0
1,139,052	+		IAI47_05375	0.46	+0.4
1,139,128	-		IAI47_05375	0.62	+0.1
1,139,128	-		IAI47_05375	0.62	+0.7
1,139,128	-		IAI47_05375	0.62	+1.1
1,139,128	-		IAI47_05375	0.62	+0.7