Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03560 and IAI47_03565 are separated by 154 nucleotides IAI47_03565 and IAI47_03570 overlap by 1 nucleotides IAI47_03570 and IAI47_03575 are separated by 65 nucleotides
IAI47_03560: IAI47_03560 - A/G-specific adenine glycosylase, at 744,159 to 745,244
_03560
IAI47_03565: IAI47_03565 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 745,399 to 746,118
_03565
IAI47_03570: IAI47_03570 - YggL family protein, at 746,118 to 746,444
_03570
IAI47_03575: IAI47_03575 - DUF2884 domain-containing protein, at 746,510 to 747,226
_03575
Position (kb) 745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 744.569 kb on + strand, within IAI47_03560 at 744.569 kb on + strand, within IAI47_03560 at 744.570 kb on - strand, within IAI47_03560 at 744.570 kb on - strand, within IAI47_03560 at 744.586 kb on + strand, within IAI47_03560 at 744.610 kb on + strand, within IAI47_03560 at 744.611 kb on - strand, within IAI47_03560 at 744.611 kb on - strand, within IAI47_03560 at 744.629 kb on + strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.701 kb on + strand, within IAI47_03560 at 744.702 kb on - strand, within IAI47_03560 at 744.797 kb on - strand, within IAI47_03560 at 744.923 kb on + strand, within IAI47_03560 at 744.924 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.972 kb on - strand, within IAI47_03560 at 744.981 kb on - strand, within IAI47_03560 at 744.981 kb on - strand, within IAI47_03560 at 744.994 kb on + strand, within IAI47_03560 at 744.994 kb on + strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.995 kb on - strand, within IAI47_03560 at 744.997 kb on - strand, within IAI47_03560 at 744.998 kb on - strand, within IAI47_03560 at 745.076 kb on + strand, within IAI47_03560 at 745.077 kb on - strand, within IAI47_03560 at 745.077 kb on - strand, within IAI47_03560 at 745.090 kb on + strand, within IAI47_03560 at 745.090 kb on + strand, within IAI47_03560 at 745.098 kb on + strand, within IAI47_03560 at 745.098 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.122 kb on + strand, within IAI47_03560 at 745.123 kb on - strand, within IAI47_03560 at 745.123 kb on - strand, within IAI47_03560 at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.148 kb on + strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.149 kb on - strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.150 kb on + strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.151 kb on - strand at 745.202 kb on - strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.244 kb on + strand at 745.245 kb on - strand at 745.245 kb on - strand at 745.245 kb on - strand at 745.245 kb on - strand at 745.245 kb on - strand at 745.266 kb on + strand at 745.266 kb on + strand at 745.266 kb on + strand at 745.266 kb on + strand at 745.266 kb on + strand at 745.267 kb on - strand at 745.271 kb on + strand at 745.271 kb on + strand at 745.271 kb on + strand at 745.271 kb on + strand at 745.272 kb on - strand at 745.272 kb on - strand at 745.311 kb on + strand at 745.311 kb on + strand at 745.312 kb on - strand at 745.312 kb on - strand at 745.312 kb on - strand at 745.344 kb on + strand at 745.344 kb on + strand at 745.344 kb on + strand at 745.345 kb on - strand at 745.345 kb on - strand at 745.357 kb on + strand at 745.357 kb on + strand at 745.357 kb on + strand at 745.358 kb on - strand at 745.382 kb on - strand at 745.382 kb on - strand at 745.396 kb on + strand at 745.396 kb on + strand at 745.396 kb on + strand at 745.397 kb on - strand at 745.397 kb on - strand at 745.397 kb on - strand at 745.404 kb on + strand at 745.404 kb on + strand at 745.405 kb on - strand at 745.405 kb on - strand at 745.405 kb on - strand at 745.461 kb on + strand at 745.461 kb on + strand at 745.543 kb on + strand, within IAI47_03565 at 745.543 kb on + strand, within IAI47_03565 at 745.544 kb on - strand, within IAI47_03565 at 745.638 kb on + strand, within IAI47_03565 at 745.638 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.697 kb on + strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.698 kb on - strand, within IAI47_03565 at 745.807 kb on - strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.839 kb on + strand, within IAI47_03565 at 745.840 kb on - strand, within IAI47_03565 at 745.840 kb on - strand, within IAI47_03565 at 745.855 kb on - strand, within IAI47_03565 at 745.855 kb on - strand, within IAI47_03565 at 745.899 kb on + strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.900 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.949 kb on - strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.959 kb on + strand, within IAI47_03565 at 745.960 kb on - strand, within IAI47_03565 at 745.960 kb on - strand, within IAI47_03565 at 745.960 kb on - strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.017 kb on + strand, within IAI47_03565 at 746.018 kb on - strand, within IAI47_03565 at 746.018 kb on - strand, within IAI47_03565 at 746.018 kb on - strand, within IAI47_03565 at 746.075 kb on + strand at 746.076 kb on - strand at 746.088 kb on - strand at 746.096 kb on + strand at 746.096 kb on + strand at 746.096 kb on + strand at 746.097 kb on - strand at 746.116 kb on + strand at 746.116 kb on + strand at 746.302 kb on - strand, within IAI47_03570 at 746.302 kb on - strand, within IAI47_03570 at 746.342 kb on + strand, within IAI47_03570 at 746.343 kb on - strand, within IAI47_03570 at 746.348 kb on + strand, within IAI47_03570 at 746.348 kb on + strand, within IAI47_03570 at 746.348 kb on + strand, within IAI47_03570 at 746.349 kb on - strand, within IAI47_03570 at 746.442 kb on + strand at 746.442 kb on + strand at 746.442 kb on + strand at 746.443 kb on - strand at 746.443 kb on - strand at 746.443 kb on - strand at 746.498 kb on + strand at 746.499 kb on - strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.505 kb on + strand at 746.506 kb on - strand at 746.506 kb on - strand at 746.506 kb on - strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.509 kb on + strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.510 kb on - strand at 746.518 kb on + strand at 746.519 kb on - strand at 746.545 kb on - strand at 746.545 kb on - strand at 746.570 kb on + strand at 746.570 kb on + strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.571 kb on - strand at 746.584 kb on + strand, within IAI47_03575 at 746.584 kb on + strand, within IAI47_03575 at 746.647 kb on + strand, within IAI47_03575 at 746.648 kb on - strand, within IAI47_03575 at 746.704 kb on + strand, within IAI47_03575 at 746.705 kb on - strand, within IAI47_03575 at 746.733 kb on - strand, within IAI47_03575 at 746.908 kb on + strand, within IAI47_03575 at 747.016 kb on + strand, within IAI47_03575 at 747.037 kb on + strand, within IAI47_03575 at 747.038 kb on - strand, within IAI47_03575 at 747.038 kb on - strand, within IAI47_03575 at 747.076 kb on + strand, within IAI47_03575 at 747.077 kb on - strand, within IAI47_03575 at 747.077 kb on - strand, within IAI47_03575
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 744,569 + IAI47_03560 0.38 -1.2 744,569 + IAI47_03560 0.38 +0.8 744,570 - IAI47_03560 0.38 +0.3 744,570 - IAI47_03560 0.38 -0.3 744,586 + IAI47_03560 0.39 +1.6 744,610 + IAI47_03560 0.42 -1.0 744,611 - IAI47_03560 0.42 -0.2 744,611 - IAI47_03560 0.42 -1.4 744,629 + IAI47_03560 0.43 +0.1 744,630 - IAI47_03560 0.43 +0.1 744,630 - IAI47_03560 0.43 +0.6 744,630 - IAI47_03560 0.43 +0.1 744,630 - IAI47_03560 0.43 -0.8 744,701 + IAI47_03560 0.50 -0.4 744,702 - IAI47_03560 0.50 -0.3 744,797 - IAI47_03560 0.59 +1.2 744,923 + IAI47_03560 0.70 -0.5 744,924 - IAI47_03560 0.70 +0.3 744,972 - IAI47_03560 0.75 -0.5 744,972 - IAI47_03560 0.75 -2.0 744,972 - IAI47_03560 0.75 +0.3 744,972 - IAI47_03560 0.75 +1.0 744,981 - IAI47_03560 0.76 -0.4 744,981 - IAI47_03560 0.76 -0.8 744,994 + IAI47_03560 0.77 -0.1 744,994 + IAI47_03560 0.77 +0.3 744,995 - IAI47_03560 0.77 +0.8 744,995 - IAI47_03560 0.77 +1.2 744,995 - IAI47_03560 0.77 +0.5 744,995 - IAI47_03560 0.77 -0.5 744,997 - IAI47_03560 0.77 -0.5 744,998 - IAI47_03560 0.77 -1.0 745,076 + IAI47_03560 0.84 -0.3 745,077 - IAI47_03560 0.85 +0.1 745,077 - IAI47_03560 0.85 -1.2 745,090 + IAI47_03560 0.86 +1.3 745,090 + IAI47_03560 0.86 +0.8 745,098 + IAI47_03560 0.86 +0.2 745,098 + IAI47_03560 0.86 +0.3 745,122 + IAI47_03560 0.89 +0.9 745,122 + IAI47_03560 0.89 +0.2 745,122 + IAI47_03560 0.89 -0.9 745,122 + IAI47_03560 0.89 -0.1 745,123 - IAI47_03560 0.89 -0.2 745,123 - IAI47_03560 0.89 -0.3 745,148 + -1.7 745,148 + -0.6 745,148 + -0.3 745,148 + -0.6 745,148 + -0.2 745,148 + -0.5 745,148 + -0.2 745,148 + +1.7 745,148 + -0.1 745,149 - +1.3 745,149 - +0.3 745,149 - -0.1 745,149 - -0.7 745,149 - +0.1 745,149 - -0.1 745,149 - +0.2 745,149 - -0.5 745,149 - +0.5 745,149 - +0.9 745,149 - -0.2 745,150 + +0.9 745,150 + +0.0 745,150 + -2.0 745,150 + +0.3 745,150 + +1.8 745,150 + -0.6 745,151 - -1.4 745,151 - +1.2 745,151 - +0.8 745,151 - +0.3 745,151 - -0.2 745,151 - -0.5 745,151 - +1.5 745,151 - -0.5 745,202 - +2.2 745,244 + +3.5 745,244 + -0.3 745,244 + -1.0 745,244 + +1.2 745,244 + +0.8 745,244 + -2.0 745,244 + +0.3 745,244 + -0.2 745,244 + +0.8 745,244 + +1.1 745,245 - +0.1 745,245 - -0.8 745,245 - +0.6 745,245 - -2.2 745,245 - +1.3 745,266 + +1.9 745,266 + -0.3 745,266 + -0.2 745,266 + -0.7 745,266 + +0.3 745,267 - -0.8 745,271 + +0.3 745,271 + +0.1 745,271 + -0.1 745,271 + -1.0 745,272 - +1.2 745,272 - +0.1 745,311 + +0.8 745,311 + -0.1 745,312 - +1.3 745,312 - -0.1 745,312 - -0.9 745,344 + +1.1 745,344 + +0.5 745,344 + +0.1 745,345 - +0.5 745,345 - -0.3 745,357 + +0.7 745,357 + +0.2 745,357 + -0.4 745,358 - -0.2 745,382 - +1.3 745,382 - +0.2 745,396 + +1.1 745,396 + -0.7 745,396 + +0.8 745,397 - +1.9 745,397 - +0.3 745,397 - +0.1 745,404 + -0.1 745,404 + -0.3 745,405 - -0.3 745,405 - +3.2 745,405 - +0.0 745,461 + -0.7 745,461 + -0.3 745,543 + IAI47_03565 0.20 +3.9 745,543 + IAI47_03565 0.20 -0.4 745,544 - IAI47_03565 0.20 +0.3 745,638 + IAI47_03565 0.33 +0.3 745,638 + IAI47_03565 0.33 +2.5 745,697 + IAI47_03565 0.41 +0.8 745,697 + IAI47_03565 0.41 -0.7 745,697 + IAI47_03565 0.41 +0.2 745,697 + IAI47_03565 0.41 +1.7 745,697 + IAI47_03565 0.41 +1.2 745,697 + IAI47_03565 0.41 +2.2 745,698 - IAI47_03565 0.42 +0.3 745,698 - IAI47_03565 0.42 +0.6 745,698 - IAI47_03565 0.42 -0.6 745,698 - IAI47_03565 0.42 +1.6 745,807 - IAI47_03565 0.57 +2.2 745,839 + IAI47_03565 0.61 -0.9 745,839 + IAI47_03565 0.61 +2.2 745,839 + IAI47_03565 0.61 -0.5 745,839 + IAI47_03565 0.61 -0.4 745,839 + IAI47_03565 0.61 +0.3 745,840 - IAI47_03565 0.61 -0.2 745,840 - IAI47_03565 0.61 +0.1 745,855 - IAI47_03565 0.63 +0.6 745,855 - IAI47_03565 0.63 -0.2 745,899 + IAI47_03565 0.69 +0.3 745,900 - IAI47_03565 0.70 +3.0 745,900 - IAI47_03565 0.70 +1.3 745,900 - IAI47_03565 0.70 -0.9 745,900 - IAI47_03565 0.70 +0.3 745,900 - IAI47_03565 0.70 +1.1 745,900 - IAI47_03565 0.70 +1.9 745,900 - IAI47_03565 0.70 +0.2 745,949 - IAI47_03565 0.76 +0.9 745,949 - IAI47_03565 0.76 -1.2 745,949 - IAI47_03565 0.76 +0.3 745,949 - IAI47_03565 0.76 +0.8 745,959 + IAI47_03565 0.78 +0.7 745,959 + IAI47_03565 0.78 +1.6 745,959 + IAI47_03565 0.78 -1.1 745,959 + IAI47_03565 0.78 +0.6 745,959 + IAI47_03565 0.78 +1.2 745,959 + IAI47_03565 0.78 -0.3 745,959 + IAI47_03565 0.78 +0.9 745,960 - IAI47_03565 0.78 +1.3 745,960 - IAI47_03565 0.78 -0.5 745,960 - IAI47_03565 0.78 +0.1 746,017 + IAI47_03565 0.86 +0.0 746,017 + IAI47_03565 0.86 +0.8 746,017 + IAI47_03565 0.86 +1.3 746,017 + IAI47_03565 0.86 -0.7 746,017 + IAI47_03565 0.86 +0.7 746,017 + IAI47_03565 0.86 +1.3 746,018 - IAI47_03565 0.86 +0.0 746,018 - IAI47_03565 0.86 +0.2 746,018 - IAI47_03565 0.86 +1.0 746,075 + +1.1 746,076 - +0.8 746,088 - +0.1 746,096 + -0.1 746,096 + +1.7 746,096 + +0.6 746,097 - +0.3 746,116 + -1.5 746,116 + +0.9 746,302 - IAI47_03570 0.56 +0.3 746,302 - IAI47_03570 0.56 -0.1 746,342 + IAI47_03570 0.69 +0.5 746,343 - IAI47_03570 0.69 +0.2 746,348 + IAI47_03570 0.70 +0.9 746,348 + IAI47_03570 0.70 +0.8 746,348 + IAI47_03570 0.70 -1.8 746,349 - IAI47_03570 0.71 +0.3 746,442 + -0.1 746,442 + +0.3 746,442 + -0.5 746,443 - -1.4 746,443 - +0.2 746,443 - -0.9 746,498 + +0.8 746,499 - -0.8 746,505 + +1.8 746,505 + -0.3 746,505 + -0.3 746,505 + +0.9 746,505 + +1.1 746,505 + +0.2 746,505 + +0.5 746,506 - +0.3 746,506 - +0.3 746,506 - -0.2 746,509 + -2.8 746,509 + -0.5 746,509 + +0.1 746,509 + -1.2 746,509 + -0.1 746,509 + +2.9 746,509 + +0.2 746,509 + -0.4 746,509 + +0.6 746,509 + -0.4 746,509 + +0.2 746,509 + +0.1 746,509 + -1.2 746,509 + -1.2 746,509 + +0.7 746,509 + +0.1 746,509 + -0.1 746,509 + -1.2 746,510 - -0.9 746,510 - -0.2 746,510 - +1.8 746,510 - -0.1 746,510 - -1.1 746,510 - -1.5 746,510 - +0.8 746,510 - -0.8 746,510 - -0.2 746,510 - -0.4 746,510 - -0.1 746,518 + -0.0 746,519 - -0.1 746,545 - +0.3 746,545 - -0.1 746,570 + +0.1 746,570 + +0.3 746,571 - +0.1 746,571 - +0.3 746,571 - +0.6 746,571 - +0.2 746,571 - -0.3 746,571 - -0.7 746,584 + IAI47_03575 0.10 -0.6 746,584 + IAI47_03575 0.10 +0.0 746,647 + IAI47_03575 0.19 +1.9 746,648 - IAI47_03575 0.19 +0.0 746,704 + IAI47_03575 0.27 +2.3 746,705 - IAI47_03575 0.27 -1.2 746,733 - IAI47_03575 0.31 -0.5 746,908 + IAI47_03575 0.56 -0.1 747,016 + IAI47_03575 0.71 -0.5 747,037 + IAI47_03575 0.74 -1.2 747,038 - IAI47_03575 0.74 -1.4 747,038 - IAI47_03575 0.74 -0.5 747,076 + IAI47_03575 0.79 -0.5 747,077 - IAI47_03575 0.79 +1.0 747,077 - IAI47_03575 0.79 +0.6
Or see this region's nucleotide sequence