Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03545 and IAI47_03550 are separated by 971 nucleotides IAI47_03550 and IAI47_03555 are separated by 54 nucleotides IAI47_03555 and IAI47_03560 overlap by 1 nucleotides
IAI47_03545: IAI47_03545 - ornithine decarboxylase, at 739,628 to 741,781
_03545
IAI47_03550: IAI47_03550 - membrane-bound lytic murein transglycosylase MltC, at 742,753 to 743,832
_03550
IAI47_03555: IAI47_03555 - oxidative damage protection protein, at 743,887 to 744,159
_03555
IAI47_03560: IAI47_03560 - A/G-specific adenine glycosylase, at 744,159 to 745,244
_03560
Position (kb) 742
743
744 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 741.763 kb on + strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.763 kb on + strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.764 kb on - strand at 741.768 kb on + strand at 741.769 kb on - strand at 741.769 kb on - strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.922 kb on + strand at 741.923 kb on - strand at 741.923 kb on - strand at 741.994 kb on - strand at 742.003 kb on - strand at 742.003 kb on - strand at 742.015 kb on + strand at 742.015 kb on + strand at 742.190 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.308 kb on + strand at 742.309 kb on - strand at 742.605 kb on + strand at 742.605 kb on + strand at 742.605 kb on + strand at 742.606 kb on - strand at 742.708 kb on + strand at 742.709 kb on - strand at 742.766 kb on + strand at 742.791 kb on + strand at 742.791 kb on + strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.792 kb on - strand at 742.793 kb on + strand at 742.793 kb on + strand at 742.793 kb on + strand at 742.793 kb on + strand at 742.793 kb on + strand at 742.794 kb on - strand at 742.794 kb on - strand at 742.794 kb on - strand at 742.794 kb on - strand at 742.794 kb on - strand at 742.794 kb on - strand at 742.800 kb on - strand at 742.863 kb on + strand, within IAI47_03550 at 742.863 kb on + strand, within IAI47_03550 at 742.863 kb on + strand, within IAI47_03550 at 742.863 kb on + strand, within IAI47_03550 at 742.864 kb on - strand, within IAI47_03550 at 742.864 kb on - strand, within IAI47_03550 at 742.864 kb on - strand, within IAI47_03550 at 742.864 kb on - strand, within IAI47_03550 at 742.937 kb on + strand, within IAI47_03550 at 742.991 kb on + strand, within IAI47_03550 at 743.015 kb on + strand, within IAI47_03550 at 743.015 kb on + strand, within IAI47_03550 at 743.016 kb on - strand, within IAI47_03550 at 743.016 kb on - strand, within IAI47_03550 at 743.057 kb on + strand, within IAI47_03550 at 743.082 kb on + strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.083 kb on - strand, within IAI47_03550 at 743.194 kb on - strand, within IAI47_03550 at 743.225 kb on + strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.226 kb on - strand, within IAI47_03550 at 743.242 kb on - strand, within IAI47_03550 at 743.259 kb on - strand, within IAI47_03550 at 743.313 kb on - strand, within IAI47_03550 at 743.313 kb on - strand, within IAI47_03550 at 743.349 kb on + strand, within IAI47_03550 at 743.349 kb on + strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.350 kb on - strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.363 kb on + strand, within IAI47_03550 at 743.364 kb on - strand, within IAI47_03550 at 743.432 kb on + strand, within IAI47_03550 at 743.432 kb on + strand, within IAI47_03550 at 743.433 kb on - strand, within IAI47_03550 at 743.433 kb on - strand, within IAI47_03550 at 743.433 kb on - strand, within IAI47_03550 at 743.448 kb on + strand, within IAI47_03550 at 743.477 kb on + strand, within IAI47_03550 at 743.477 kb on + strand, within IAI47_03550 at 743.478 kb on - strand, within IAI47_03550 at 743.584 kb on - strand, within IAI47_03550 at 743.584 kb on - strand, within IAI47_03550 at 743.615 kb on + strand, within IAI47_03550 at 743.615 kb on + strand, within IAI47_03550 at 743.616 kb on - strand, within IAI47_03550 at 743.616 kb on - strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.618 kb on + strand, within IAI47_03550 at 743.619 kb on - strand, within IAI47_03550 at 743.619 kb on - strand, within IAI47_03550 at 743.619 kb on - strand, within IAI47_03550 at 743.630 kb on + strand, within IAI47_03550 at 743.630 kb on + strand, within IAI47_03550 at 743.639 kb on + strand, within IAI47_03550 at 743.683 kb on - strand, within IAI47_03550 at 743.692 kb on - strand, within IAI47_03550 at 743.692 kb on - strand, within IAI47_03550 at 743.694 kb on + strand, within IAI47_03550 at 743.694 kb on + strand, within IAI47_03550 at 743.694 kb on + strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.695 kb on - strand, within IAI47_03550 at 743.740 kb on + strand at 743.800 kb on + strand at 743.800 kb on + strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.801 kb on - strand at 743.889 kb on - strand at 743.889 kb on - strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.904 kb on + strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.905 kb on - strand at 743.906 kb on + strand at 743.907 kb on - strand at 743.907 kb on - strand at 743.907 kb on - strand at 743.916 kb on + strand, within IAI47_03555 at 743.916 kb on + strand, within IAI47_03555 at 743.917 kb on - strand, within IAI47_03555 at 743.917 kb on - strand, within IAI47_03555 at 743.917 kb on - strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.928 kb on + strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.929 kb on - strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.970 kb on + strand, within IAI47_03555 at 743.971 kb on - strand, within IAI47_03555 at 743.971 kb on - strand, within IAI47_03555 at 743.971 kb on - strand, within IAI47_03555 at 744.059 kb on - strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.068 kb on + strand, within IAI47_03555 at 744.069 kb on - strand, within IAI47_03555 at 744.069 kb on - strand, within IAI47_03555 at 744.069 kb on - strand, within IAI47_03555 at 744.072 kb on + strand, within IAI47_03555 at 744.072 kb on + strand, within IAI47_03555 at 744.073 kb on - strand, within IAI47_03555 at 744.073 kb on - strand, within IAI47_03555 at 744.073 kb on - strand, within IAI47_03555 at 744.078 kb on + strand, within IAI47_03555 at 744.160 kb on + strand at 744.160 kb on + strand at 744.160 kb on + strand at 744.160 kb on + strand at 744.161 kb on - strand at 744.173 kb on + strand at 744.174 kb on - strand at 744.222 kb on + strand at 744.222 kb on + strand at 744.223 kb on - strand at 744.223 kb on - strand at 744.247 kb on - strand at 744.247 kb on - strand at 744.270 kb on + strand, within IAI47_03560 at 744.271 kb on - strand, within IAI47_03560 at 744.276 kb on - strand, within IAI47_03560 at 744.276 kb on - strand, within IAI47_03560 at 744.277 kb on + strand, within IAI47_03560 at 744.278 kb on - strand, within IAI47_03560 at 744.278 kb on - strand, within IAI47_03560 at 744.278 kb on - strand, within IAI47_03560 at 744.363 kb on + strand, within IAI47_03560 at 744.569 kb on + strand, within IAI47_03560 at 744.569 kb on + strand, within IAI47_03560 at 744.570 kb on - strand, within IAI47_03560 at 744.570 kb on - strand, within IAI47_03560 at 744.586 kb on + strand, within IAI47_03560 at 744.610 kb on + strand, within IAI47_03560 at 744.611 kb on - strand, within IAI47_03560 at 744.611 kb on - strand, within IAI47_03560 at 744.629 kb on + strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.630 kb on - strand, within IAI47_03560 at 744.701 kb on + strand, within IAI47_03560 at 744.702 kb on - strand, within IAI47_03560 at 744.797 kb on - strand, within IAI47_03560
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 741,763 + +1.0 741,763 + -0.3 741,763 + -1.3 741,763 + +0.3 741,764 - +0.1 741,764 - +0.1 741,764 - +0.2 741,764 - +0.3 741,768 + +0.5 741,769 - +0.2 741,769 - -1.0 741,922 + +0.0 741,922 + +0.3 741,922 + +1.4 741,922 + -1.2 741,923 - +1.2 741,923 - +1.7 741,994 - +0.3 742,003 - +1.5 742,003 - +0.3 742,015 + +0.6 742,015 + -1.7 742,190 + -0.7 742,308 + -0.2 742,308 + +1.7 742,308 + +0.7 742,308 + -0.5 742,308 + -1.8 742,308 + -1.1 742,309 - +0.0 742,605 + +0.3 742,605 + +0.3 742,605 + +1.4 742,606 - +0.3 742,708 + +0.1 742,709 - +0.8 742,766 + -1.2 742,791 + -0.4 742,791 + -2.1 742,792 - -1.4 742,792 - -0.4 742,792 - -0.7 742,792 - -2.0 742,792 - +1.3 742,792 - -2.2 742,792 - -2.5 742,792 - +0.3 742,793 + +2.7 742,793 + -2.5 742,793 + -0.4 742,793 + -3.8 742,793 + -1.2 742,794 - -2.5 742,794 - -1.4 742,794 - -2.0 742,794 - -1.5 742,794 - -1.2 742,794 - +1.7 742,800 - -1.4 742,863 + IAI47_03550 0.10 +0.3 742,863 + IAI47_03550 0.10 -1.2 742,863 + IAI47_03550 0.10 -1.4 742,863 + IAI47_03550 0.10 -3.7 742,864 - IAI47_03550 0.10 -2.1 742,864 - IAI47_03550 0.10 -0.7 742,864 - IAI47_03550 0.10 -0.2 742,864 - IAI47_03550 0.10 -2.7 742,937 + IAI47_03550 0.17 -2.2 742,991 + IAI47_03550 0.22 -2.0 743,015 + IAI47_03550 0.24 -1.0 743,015 + IAI47_03550 0.24 -1.1 743,016 - IAI47_03550 0.24 -1.1 743,016 - IAI47_03550 0.24 +0.3 743,057 + IAI47_03550 0.28 +0.3 743,082 + IAI47_03550 0.30 -0.7 743,083 - IAI47_03550 0.31 -2.0 743,083 - IAI47_03550 0.31 +0.3 743,083 - IAI47_03550 0.31 +0.0 743,083 - IAI47_03550 0.31 -0.2 743,194 - IAI47_03550 0.41 -1.4 743,225 + IAI47_03550 0.44 -1.9 743,226 - IAI47_03550 0.44 -1.7 743,226 - IAI47_03550 0.44 -1.7 743,226 - IAI47_03550 0.44 -1.7 743,226 - IAI47_03550 0.44 -3.2 743,242 - IAI47_03550 0.45 -2.8 743,259 - IAI47_03550 0.47 -0.8 743,313 - IAI47_03550 0.52 -2.7 743,313 - IAI47_03550 0.52 -2.0 743,349 + IAI47_03550 0.55 -1.4 743,349 + IAI47_03550 0.55 -3.0 743,350 - IAI47_03550 0.55 -3.0 743,350 - IAI47_03550 0.55 -2.2 743,350 - IAI47_03550 0.55 -2.0 743,350 - IAI47_03550 0.55 -1.2 743,350 - IAI47_03550 0.55 -2.2 743,363 + IAI47_03550 0.56 -2.0 743,363 + IAI47_03550 0.56 -0.7 743,363 + IAI47_03550 0.56 -2.0 743,363 + IAI47_03550 0.56 -1.7 743,363 + IAI47_03550 0.56 -2.2 743,363 + IAI47_03550 0.56 -1.2 743,364 - IAI47_03550 0.57 -2.0 743,432 + IAI47_03550 0.63 -1.5 743,432 + IAI47_03550 0.63 -0.2 743,433 - IAI47_03550 0.63 -3.1 743,433 - IAI47_03550 0.63 -1.7 743,433 - IAI47_03550 0.63 -1.7 743,448 + IAI47_03550 0.64 -2.0 743,477 + IAI47_03550 0.67 -3.2 743,477 + IAI47_03550 0.67 -2.2 743,478 - IAI47_03550 0.67 -1.7 743,584 - IAI47_03550 0.77 -2.2 743,584 - IAI47_03550 0.77 -0.7 743,615 + IAI47_03550 0.80 -2.8 743,615 + IAI47_03550 0.80 -2.2 743,616 - IAI47_03550 0.80 -1.7 743,616 - IAI47_03550 0.80 -1.7 743,618 + IAI47_03550 0.80 -2.2 743,618 + IAI47_03550 0.80 -1.2 743,618 + IAI47_03550 0.80 -1.1 743,618 + IAI47_03550 0.80 -2.4 743,618 + IAI47_03550 0.80 -2.2 743,618 + IAI47_03550 0.80 -1.8 743,618 + IAI47_03550 0.80 +0.3 743,618 + IAI47_03550 0.80 -1.4 743,618 + IAI47_03550 0.80 -2.8 743,618 + IAI47_03550 0.80 -2.2 743,619 - IAI47_03550 0.80 -1.0 743,619 - IAI47_03550 0.80 -2.8 743,619 - IAI47_03550 0.80 -2.5 743,630 + IAI47_03550 0.81 -2.0 743,630 + IAI47_03550 0.81 -3.2 743,639 + IAI47_03550 0.82 -2.2 743,683 - IAI47_03550 0.86 -1.9 743,692 - IAI47_03550 0.87 -1.7 743,692 - IAI47_03550 0.87 +0.3 743,694 + IAI47_03550 0.87 +0.3 743,694 + IAI47_03550 0.87 -2.0 743,694 + IAI47_03550 0.87 +0.3 743,695 - IAI47_03550 0.87 -2.0 743,695 - IAI47_03550 0.87 -2.2 743,695 - IAI47_03550 0.87 -2.0 743,695 - IAI47_03550 0.87 -2.3 743,740 + +0.0 743,800 + -2.0 743,800 + -0.7 743,801 - -0.2 743,801 - -0.7 743,801 - -2.7 743,801 - -1.0 743,889 - -0.7 743,889 - +0.2 743,904 + -1.8 743,904 + -1.4 743,904 + -1.2 743,904 + -0.7 743,904 + -2.7 743,904 + -2.2 743,904 + -0.7 743,904 + -1.7 743,904 + -2.5 743,905 - +0.3 743,905 - +1.5 743,905 - -0.8 743,905 - -0.1 743,905 - +0.5 743,905 - -0.9 743,905 - -0.4 743,905 - -0.3 743,905 - -0.1 743,905 - -1.0 743,906 + -1.0 743,907 - +0.7 743,907 - +0.6 743,907 - -0.8 743,916 + IAI47_03555 0.11 -2.7 743,916 + IAI47_03555 0.11 -1.5 743,917 - IAI47_03555 0.11 +0.3 743,917 - IAI47_03555 0.11 +0.8 743,917 - IAI47_03555 0.11 -2.8 743,928 + IAI47_03555 0.15 -2.1 743,928 + IAI47_03555 0.15 -1.8 743,928 + IAI47_03555 0.15 -1.1 743,928 + IAI47_03555 0.15 +0.3 743,928 + IAI47_03555 0.15 +0.1 743,929 - IAI47_03555 0.15 +0.7 743,929 - IAI47_03555 0.15 -0.5 743,929 - IAI47_03555 0.15 +0.3 743,929 - IAI47_03555 0.15 +0.9 743,970 + IAI47_03555 0.30 -1.1 743,970 + IAI47_03555 0.30 -3.4 743,970 + IAI47_03555 0.30 -1.2 743,970 + IAI47_03555 0.30 -0.7 743,971 - IAI47_03555 0.31 -0.4 743,971 - IAI47_03555 0.31 -0.1 743,971 - IAI47_03555 0.31 -0.7 744,059 - IAI47_03555 0.63 -1.1 744,068 + IAI47_03555 0.66 +0.3 744,068 + IAI47_03555 0.66 -0.3 744,068 + IAI47_03555 0.66 -1.0 744,068 + IAI47_03555 0.66 +0.6 744,069 - IAI47_03555 0.67 -1.2 744,069 - IAI47_03555 0.67 -0.7 744,069 - IAI47_03555 0.67 +0.6 744,072 + IAI47_03555 0.68 +1.3 744,072 + IAI47_03555 0.68 -0.7 744,073 - IAI47_03555 0.68 +1.3 744,073 - IAI47_03555 0.68 -0.7 744,073 - IAI47_03555 0.68 +0.3 744,078 + IAI47_03555 0.70 -0.7 744,160 + -0.2 744,160 + -0.1 744,160 + -0.1 744,160 + -0.2 744,161 - +0.3 744,173 + +0.2 744,174 - -0.9 744,222 + +0.3 744,222 + +0.3 744,223 - -1.5 744,223 - +2.3 744,247 - +1.6 744,247 - +0.2 744,270 + IAI47_03560 0.10 +0.3 744,271 - IAI47_03560 0.10 -0.5 744,276 - IAI47_03560 0.11 -0.8 744,276 - IAI47_03560 0.11 -0.4 744,277 + IAI47_03560 0.11 -0.8 744,278 - IAI47_03560 0.11 -1.0 744,278 - IAI47_03560 0.11 -0.3 744,278 - IAI47_03560 0.11 -0.0 744,363 + IAI47_03560 0.19 +0.3 744,569 + IAI47_03560 0.38 -1.2 744,569 + IAI47_03560 0.38 +0.8 744,570 - IAI47_03560 0.38 +0.3 744,570 - IAI47_03560 0.38 -0.3 744,586 + IAI47_03560 0.39 +1.6 744,610 + IAI47_03560 0.42 -1.0 744,611 - IAI47_03560 0.42 -0.2 744,611 - IAI47_03560 0.42 -1.4 744,629 + IAI47_03560 0.43 +0.1 744,630 - IAI47_03560 0.43 +0.1 744,630 - IAI47_03560 0.43 +0.6 744,630 - IAI47_03560 0.43 +0.1 744,630 - IAI47_03560 0.43 -0.8 744,701 + IAI47_03560 0.50 -0.4 744,702 - IAI47_03560 0.50 -0.3 744,797 - IAI47_03560 0.59 +1.2
Or see this region's nucleotide sequence