Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03105 and IAI47_03110 are separated by 43 nucleotides IAI47_03110 and IAI47_03115 are separated by 438 nucleotides IAI47_03115 and IAI47_03120 are separated by 235 nucleotides
IAI47_03105: IAI47_03105 - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 643,415 to 644,839
_03105
IAI47_03110: IAI47_03110 - accessory factor UbiK family protein, at 644,883 to 645,269
_03110
IAI47_03115: IAI47_03115 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 645,708 to 646,364
_03115
IAI47_03120: IAI47_03120 - 4,5-DOPA dioxygenase extradiol, at 646,600 to 647,385
_03120
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 644.850 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.851 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.892 kb on - strand at 644.892 kb on - strand at 644.892 kb on - strand at 645.285 kb on - strand at 645.307 kb on + strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.353 kb on - strand at 645.396 kb on + strand at 645.428 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 646.362 kb on + strand at 646.362 kb on + strand at 646.362 kb on + strand at 646.380 kb on + strand at 646.381 kb on - strand at 646.435 kb on + strand at 646.435 kb on + strand at 646.436 kb on - strand at 646.436 kb on - strand at 646.466 kb on + strand at 646.466 kb on + strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.467 kb on - strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.470 kb on + strand at 646.486 kb on + strand at 646.486 kb on + strand at 646.487 kb on - strand at 646.530 kb on + strand at 646.530 kb on + strand at 646.531 kb on - strand at 646.531 kb on - strand at 646.531 kb on - strand at 646.541 kb on + strand at 646.560 kb on - strand at 646.564 kb on + strand at 646.564 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.610 kb on + strand at 646.611 kb on - strand at 646.611 kb on - strand at 646.611 kb on - strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.614 kb on + strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.615 kb on - strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.672 kb on + strand at 646.673 kb on - strand at 646.675 kb on - strand at 646.725 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.747 kb on + strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.748 kb on - strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.749 kb on + strand, within IAI47_03120 at 646.750 kb on - strand, within IAI47_03120 at 646.750 kb on - strand, within IAI47_03120 at 646.785 kb on + strand, within IAI47_03120 at 646.786 kb on - strand, within IAI47_03120 at 646.786 kb on - strand, within IAI47_03120 at 646.838 kb on - strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.886 kb on + strand, within IAI47_03120 at 646.887 kb on - strand, within IAI47_03120 at 646.887 kb on - strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.901 kb on + strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.902 kb on - strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.960 kb on + strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.961 kb on - strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.991 kb on + strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 646.992 kb on - strand, within IAI47_03120 at 647.007 kb on + strand, within IAI47_03120 at 647.100 kb on + strand, within IAI47_03120 at 647.100 kb on + strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.101 kb on - strand, within IAI47_03120 at 647.109 kb on + strand, within IAI47_03120 at 647.140 kb on + strand, within IAI47_03120 at 647.140 kb on + strand, within IAI47_03120 at 647.141 kb on - strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.226 kb on + strand, within IAI47_03120 at 647.227 kb on - strand, within IAI47_03120 at 647.253 kb on + strand, within IAI47_03120 at 647.253 kb on + strand, within IAI47_03120 at 647.272 kb on + strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.273 kb on - strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.287 kb on + strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120 at 647.288 kb on - strand, within IAI47_03120
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 644,850 + -1.5 644,850 + +0.9 644,850 + -0.5 644,851 - +0.4 644,882 - -0.3 644,882 - +0.1 644,882 - -0.4 644,882 - -0.6 644,882 - +1.1 644,882 - -0.6 644,882 - +1.8 644,884 + +0.4 644,884 + +0.4 644,884 + +0.7 644,884 + -0.0 644,884 + -0.2 644,885 - -0.2 644,885 - -0.1 644,885 - +0.4 644,885 - -0.8 644,885 - +0.0 644,885 - -0.1 644,885 - +1.4 644,891 + +0.6 644,891 + -1.4 644,891 + +0.7 644,891 + -0.6 644,892 - -0.3 644,892 - +0.4 644,892 - -0.9 645,285 - -1.3 645,307 + -0.2 645,308 - -0.1 645,308 - +2.7 645,308 - +0.8 645,315 + -0.2 645,315 + -0.8 645,315 + +1.2 645,315 + +0.1 645,315 + -0.6 645,315 + +0.8 645,316 - +0.8 645,316 - +0.4 645,316 - +0.1 645,316 - -0.5 645,316 - -1.3 645,318 + -1.2 645,318 + +0.4 645,318 + -1.2 645,318 + +0.4 645,318 + +1.4 645,319 - +0.6 645,319 - -1.5 645,319 - +0.2 645,319 - +0.4 645,325 + +1.0 645,325 + -0.3 645,325 + +0.7 645,325 + +1.0 645,326 - +0.9 645,326 - -0.5 645,326 - +1.8 645,326 - -1.0 645,331 + +1.9 645,331 + +0.0 645,331 + +0.4 645,331 + -0.6 645,331 + -0.1 645,331 + -0.4 645,331 + -1.4 645,332 - +0.7 645,332 - -0.1 645,332 - -0.4 645,332 - -0.3 645,353 - +0.1 645,396 + -0.3 645,428 + +0.4 645,430 + +0.2 645,430 + -0.1 645,430 + +1.3 645,430 + +1.7 645,430 + +1.8 645,658 + +0.1 645,658 + +1.7 645,658 + +0.6 645,658 + -1.5 646,362 + +0.0 646,362 + -0.8 646,362 + -1.2 646,380 + +0.2 646,381 - -0.4 646,435 + +0.3 646,435 + -3.0 646,436 - -0.6 646,436 - +1.1 646,466 + +0.2 646,466 + -0.3 646,467 - +0.1 646,467 - +1.0 646,467 - +0.4 646,467 - +0.4 646,470 + +0.5 646,470 + +0.4 646,470 + +1.3 646,470 + +2.8 646,486 + -1.0 646,486 + +0.4 646,487 - +0.7 646,530 + -0.4 646,530 + +2.1 646,531 - -0.9 646,531 - +0.7 646,531 - -0.4 646,541 + -0.4 646,560 - -0.9 646,564 + -0.6 646,564 + +0.5 646,610 + -0.4 646,610 + +0.8 646,610 + -0.6 646,610 + +0.1 646,611 - +1.4 646,611 - -0.4 646,611 - +2.9 646,614 + -0.2 646,614 + -0.2 646,614 + -2.2 646,614 + +0.9 646,614 + -0.4 646,614 + +0.2 646,615 - -1.2 646,615 - -1.6 646,615 - +2.7 646,615 - -0.6 646,615 - +0.0 646,615 - +0.2 646,672 + -0.8 646,672 + -0.6 646,672 + +0.6 646,672 + +1.1 646,672 + +1.5 646,673 - -0.6 646,675 - -0.6 646,725 + IAI47_03120 0.16 -0.6 646,747 + IAI47_03120 0.19 +1.2 646,747 + IAI47_03120 0.19 -1.4 646,747 + IAI47_03120 0.19 +0.8 646,747 + IAI47_03120 0.19 +0.4 646,748 - IAI47_03120 0.19 -0.4 646,748 - IAI47_03120 0.19 -1.6 646,748 - IAI47_03120 0.19 +0.1 646,748 - IAI47_03120 0.19 -0.6 646,748 - IAI47_03120 0.19 +0.4 646,749 + IAI47_03120 0.19 +2.5 646,749 + IAI47_03120 0.19 +0.4 646,749 + IAI47_03120 0.19 +1.4 646,749 + IAI47_03120 0.19 +0.1 646,749 + IAI47_03120 0.19 +0.2 646,750 - IAI47_03120 0.19 -1.2 646,750 - IAI47_03120 0.19 -0.2 646,785 + IAI47_03120 0.24 +0.2 646,786 - IAI47_03120 0.24 +0.7 646,786 - IAI47_03120 0.24 -0.2 646,838 - IAI47_03120 0.30 -0.2 646,886 + IAI47_03120 0.36 -1.2 646,886 + IAI47_03120 0.36 -0.7 646,886 + IAI47_03120 0.36 -1.6 646,887 - IAI47_03120 0.37 -0.2 646,887 - IAI47_03120 0.37 +1.9 646,901 + IAI47_03120 0.38 -0.2 646,901 + IAI47_03120 0.38 -0.2 646,901 + IAI47_03120 0.38 -0.2 646,901 + IAI47_03120 0.38 +1.4 646,902 - IAI47_03120 0.38 -1.2 646,902 - IAI47_03120 0.38 -0.1 646,902 - IAI47_03120 0.38 -0.1 646,960 + IAI47_03120 0.46 -0.1 646,960 + IAI47_03120 0.46 +1.4 646,960 + IAI47_03120 0.46 +0.2 646,961 - IAI47_03120 0.46 +0.4 646,961 - IAI47_03120 0.46 +1.1 646,961 - IAI47_03120 0.46 -1.0 646,991 + IAI47_03120 0.50 -0.9 646,991 + IAI47_03120 0.50 -1.6 646,991 + IAI47_03120 0.50 +0.4 646,991 + IAI47_03120 0.50 +1.0 646,992 - IAI47_03120 0.50 +0.5 646,992 - IAI47_03120 0.50 -1.2 646,992 - IAI47_03120 0.50 -0.1 646,992 - IAI47_03120 0.50 +0.2 646,992 - IAI47_03120 0.50 +1.7 647,007 + IAI47_03120 0.52 +1.4 647,100 + IAI47_03120 0.64 -0.4 647,100 + IAI47_03120 0.64 +0.1 647,101 - IAI47_03120 0.64 +0.2 647,101 - IAI47_03120 0.64 -0.6 647,101 - IAI47_03120 0.64 +0.8 647,101 - IAI47_03120 0.64 +0.4 647,101 - IAI47_03120 0.64 -0.6 647,109 + IAI47_03120 0.65 +0.4 647,140 + IAI47_03120 0.69 +0.4 647,140 + IAI47_03120 0.69 -0.8 647,141 - IAI47_03120 0.69 +1.1 647,226 + IAI47_03120 0.80 -0.2 647,226 + IAI47_03120 0.80 +0.5 647,226 + IAI47_03120 0.80 +0.2 647,227 - IAI47_03120 0.80 +0.8 647,253 + IAI47_03120 0.83 -0.2 647,253 + IAI47_03120 0.83 -1.2 647,272 + IAI47_03120 0.85 +0.9 647,273 - IAI47_03120 0.86 +2.9 647,273 - IAI47_03120 0.86 +0.5 647,273 - IAI47_03120 0.86 -2.0 647,273 - IAI47_03120 0.86 -0.6 647,273 - IAI47_03120 0.86 -0.6 647,287 + IAI47_03120 0.87 -0.5 647,287 + IAI47_03120 0.87 +0.1 647,287 + IAI47_03120 0.87 -0.1 647,287 + IAI47_03120 0.87 +2.6 647,288 - IAI47_03120 0.88 -0.6 647,288 - IAI47_03120 0.88 +0.9 647,288 - IAI47_03120 0.88 +1.1 647,288 - IAI47_03120 0.88 +0.4 647,288 - IAI47_03120 0.88 +0.7 647,288 - IAI47_03120 0.88 -0.6 647,288 - IAI47_03120 0.88 +1.4
Or see this region's nucleotide sequence