Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03105 and IAI47_03110 are separated by 43 nucleotides IAI47_03110 and IAI47_03115 are separated by 438 nucleotides
IAI47_03105: IAI47_03105 - bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE, at 643,415 to 644,839
_03105
IAI47_03110: IAI47_03110 - accessory factor UbiK family protein, at 644,883 to 645,269
_03110
IAI47_03115: IAI47_03115 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 645,708 to 646,364
_03115
Position (kb) 644
645
646 Strain fitness (log2 ratio) -1
0
1
2 at 644.850 kb on + strand at 644.850 kb on + strand at 644.850 kb on + strand at 644.851 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.882 kb on - strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.884 kb on + strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.885 kb on - strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.891 kb on + strand at 644.892 kb on - strand at 644.892 kb on - strand at 644.892 kb on - strand at 645.285 kb on - strand at 645.307 kb on + strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.308 kb on - strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.315 kb on + strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.316 kb on - strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.318 kb on + strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.319 kb on - strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.325 kb on + strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.326 kb on - strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.331 kb on + strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.332 kb on - strand at 645.353 kb on - strand at 645.396 kb on + strand at 645.428 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.430 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand at 645.658 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 644,850 + -1.5 644,850 + +0.9 644,850 + -0.5 644,851 - +0.4 644,882 - -0.3 644,882 - +0.1 644,882 - -0.4 644,882 - -0.6 644,882 - +1.1 644,882 - -0.6 644,882 - +1.8 644,884 + +0.4 644,884 + +0.4 644,884 + +0.7 644,884 + -0.0 644,884 + -0.2 644,885 - -0.2 644,885 - -0.1 644,885 - +0.4 644,885 - -0.8 644,885 - +0.0 644,885 - -0.1 644,885 - +1.4 644,891 + +0.6 644,891 + -1.4 644,891 + +0.7 644,891 + -0.6 644,892 - -0.3 644,892 - +0.4 644,892 - -0.9 645,285 - -1.3 645,307 + -0.2 645,308 - -0.1 645,308 - +2.7 645,308 - +0.8 645,315 + -0.2 645,315 + -0.8 645,315 + +1.2 645,315 + +0.1 645,315 + -0.6 645,315 + +0.8 645,316 - +0.8 645,316 - +0.4 645,316 - +0.1 645,316 - -0.5 645,316 - -1.3 645,318 + -1.2 645,318 + +0.4 645,318 + -1.2 645,318 + +0.4 645,318 + +1.4 645,319 - +0.6 645,319 - -1.5 645,319 - +0.2 645,319 - +0.4 645,325 + +1.0 645,325 + -0.3 645,325 + +0.7 645,325 + +1.0 645,326 - +0.9 645,326 - -0.5 645,326 - +1.8 645,326 - -1.0 645,331 + +1.9 645,331 + +0.0 645,331 + +0.4 645,331 + -0.6 645,331 + -0.1 645,331 + -0.4 645,331 + -1.4 645,332 - +0.7 645,332 - -0.1 645,332 - -0.4 645,332 - -0.3 645,353 - +0.1 645,396 + -0.3 645,428 + +0.4 645,430 + +0.2 645,430 + -0.1 645,430 + +1.3 645,430 + +1.7 645,430 + +1.8 645,658 + +0.1 645,658 + +1.7 645,658 + +0.6 645,658 + -1.5
Or see this region's nucleotide sequence