Experiment: Ying_Others16 rep C; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00115 and IAI47_00120 are separated by 32 nucleotides IAI47_00120 and IAI47_00125 are separated by 9 nucleotides IAI47_00125 and IAI47_00130 are separated by 139 nucleotides
IAI47_00115: IAI47_00115 - MFS transporter, at 24,510 to 25,790
_00115
IAI47_00120: IAI47_00120 - sugar kinase, at 25,823 to 26,782
_00120
IAI47_00125: IAI47_00125 - sugar phosphate isomerase/epimerase, at 26,792 to 27,541
_00125
IAI47_00130: IAI47_00130 - LacI family DNA-binding transcriptional regulator, at 27,681 to 28,706
_00130
Position (kb) 25
26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.830 kb on + strand, within IAI47_00115 at 24.830 kb on + strand, within IAI47_00115 at 24.830 kb on + strand, within IAI47_00115 at 24.831 kb on - strand, within IAI47_00115 at 24.831 kb on - strand, within IAI47_00115 at 24.831 kb on - strand, within IAI47_00115 at 24.831 kb on - strand, within IAI47_00115 at 24.844 kb on + strand, within IAI47_00115 at 24.845 kb on - strand, within IAI47_00115 at 24.845 kb on - strand, within IAI47_00115 at 24.845 kb on - strand, within IAI47_00115 at 24.845 kb on - strand, within IAI47_00115 at 24.845 kb on - strand, within IAI47_00115 at 24.961 kb on + strand, within IAI47_00115 at 24.961 kb on + strand, within IAI47_00115 at 24.961 kb on + strand, within IAI47_00115 at 25.048 kb on + strand, within IAI47_00115 at 25.048 kb on + strand, within IAI47_00115 at 25.048 kb on + strand, within IAI47_00115 at 25.049 kb on - strand, within IAI47_00115 at 25.072 kb on + strand, within IAI47_00115 at 25.072 kb on + strand, within IAI47_00115 at 25.073 kb on - strand, within IAI47_00115 at 25.120 kb on + strand, within IAI47_00115 at 25.120 kb on + strand, within IAI47_00115 at 25.121 kb on - strand, within IAI47_00115 at 25.121 kb on - strand, within IAI47_00115 at 25.121 kb on - strand, within IAI47_00115 at 25.121 kb on - strand, within IAI47_00115 at 25.121 kb on - strand, within IAI47_00115 at 25.121 kb on - strand, within IAI47_00115 at 25.277 kb on + strand, within IAI47_00115 at 25.277 kb on + strand, within IAI47_00115 at 25.278 kb on - strand, within IAI47_00115 at 25.278 kb on - strand, within IAI47_00115 at 25.278 kb on - strand, within IAI47_00115 at 25.278 kb on - strand, within IAI47_00115 at 25.278 kb on - strand, within IAI47_00115 at 25.312 kb on + strand, within IAI47_00115 at 25.312 kb on + strand, within IAI47_00115 at 25.313 kb on - strand, within IAI47_00115 at 25.357 kb on - strand, within IAI47_00115 at 25.398 kb on - strand, within IAI47_00115 at 25.412 kb on + strand, within IAI47_00115 at 25.413 kb on - strand, within IAI47_00115 at 25.413 kb on - strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.414 kb on + strand, within IAI47_00115 at 25.415 kb on - strand, within IAI47_00115 at 25.415 kb on - strand, within IAI47_00115 at 25.415 kb on - strand, within IAI47_00115 at 25.576 kb on + strand, within IAI47_00115 at 25.576 kb on + strand, within IAI47_00115 at 25.606 kb on + strand, within IAI47_00115 at 25.606 kb on + strand, within IAI47_00115 at 25.606 kb on + strand, within IAI47_00115 at 25.607 kb on - strand, within IAI47_00115 at 25.607 kb on - strand, within IAI47_00115 at 25.607 kb on - strand, within IAI47_00115 at 25.607 kb on - strand, within IAI47_00115 at 25.670 kb on + strand at 25.670 kb on + strand at 25.671 kb on - strand at 25.671 kb on - strand at 25.671 kb on - strand at 25.671 kb on - strand at 25.671 kb on - strand at 25.714 kb on + strand at 25.714 kb on + strand at 25.715 kb on - strand at 25.726 kb on + strand at 25.726 kb on + strand at 25.726 kb on + strand at 25.726 kb on + strand at 25.727 kb on - strand at 25.727 kb on - strand at 25.727 kb on - strand at 25.727 kb on - strand at 25.727 kb on - strand at 25.734 kb on - strand at 25.809 kb on + strand at 25.809 kb on + strand at 25.810 kb on - strand at 25.810 kb on - strand at 25.810 kb on - strand at 25.824 kb on + strand at 25.824 kb on + strand at 25.824 kb on + strand at 25.824 kb on + strand at 25.825 kb on - strand at 25.955 kb on - strand, within IAI47_00120 at 25.991 kb on - strand, within IAI47_00120 at 26.012 kb on + strand, within IAI47_00120 at 26.050 kb on + strand, within IAI47_00120 at 26.050 kb on + strand, within IAI47_00120 at 26.053 kb on - strand, within IAI47_00120 at 26.053 kb on - strand, within IAI47_00120 at 26.078 kb on + strand, within IAI47_00120 at 26.109 kb on + strand, within IAI47_00120 at 26.110 kb on - strand, within IAI47_00120 at 26.191 kb on - strand, within IAI47_00120 at 26.215 kb on + strand, within IAI47_00120 at 26.215 kb on + strand, within IAI47_00120 at 26.215 kb on + strand, within IAI47_00120 at 26.216 kb on - strand, within IAI47_00120 at 26.216 kb on - strand, within IAI47_00120 at 26.216 kb on - strand, within IAI47_00120 at 26.216 kb on - strand, within IAI47_00120 at 26.216 kb on - strand, within IAI47_00120 at 26.257 kb on + strand, within IAI47_00120 at 26.272 kb on + strand, within IAI47_00120 at 26.272 kb on + strand, within IAI47_00120 at 26.273 kb on - strand, within IAI47_00120 at 26.273 kb on - strand, within IAI47_00120 at 26.279 kb on - strand, within IAI47_00120 at 26.385 kb on + strand, within IAI47_00120 at 26.385 kb on + strand, within IAI47_00120 at 26.386 kb on - strand, within IAI47_00120 at 26.435 kb on - strand, within IAI47_00120 at 26.503 kb on - strand, within IAI47_00120 at 26.510 kb on - strand, within IAI47_00120 at 26.563 kb on + strand, within IAI47_00120 at 26.590 kb on + strand, within IAI47_00120 at 26.669 kb on - strand, within IAI47_00120 at 26.713 kb on + strand at 26.770 kb on + strand at 26.770 kb on + strand at 26.770 kb on + strand at 26.770 kb on + strand at 26.770 kb on + strand at 26.771 kb on - strand at 26.771 kb on - strand at 26.771 kb on - strand at 26.771 kb on - strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.782 kb on + strand at 26.783 kb on - strand at 26.783 kb on - strand at 26.783 kb on - strand at 26.783 kb on - strand at 26.783 kb on - strand at 26.793 kb on + strand at 26.793 kb on + strand at 26.793 kb on + strand at 26.794 kb on - strand at 26.794 kb on - strand at 26.794 kb on - strand at 26.794 kb on - strand at 26.801 kb on - strand at 26.817 kb on + strand at 26.817 kb on + strand at 26.817 kb on + strand at 26.817 kb on + strand at 26.818 kb on - strand at 26.818 kb on - strand at 26.818 kb on - strand at 26.818 kb on - strand at 26.867 kb on - strand, within IAI47_00125 at 26.950 kb on + strand, within IAI47_00125 at 26.950 kb on + strand, within IAI47_00125 at 26.951 kb on - strand, within IAI47_00125 at 26.951 kb on - strand, within IAI47_00125 at 26.951 kb on - strand, within IAI47_00125 at 26.951 kb on - strand, within IAI47_00125 at 26.985 kb on + strand, within IAI47_00125 at 26.985 kb on + strand, within IAI47_00125 at 26.985 kb on + strand, within IAI47_00125 at 26.985 kb on + strand, within IAI47_00125 at 26.985 kb on + strand, within IAI47_00125 at 26.986 kb on - strand, within IAI47_00125 at 26.986 kb on - strand, within IAI47_00125 at 26.986 kb on - strand, within IAI47_00125 at 26.986 kb on - strand, within IAI47_00125 at 26.986 kb on - strand, within IAI47_00125 at 27.049 kb on + strand, within IAI47_00125 at 27.049 kb on + strand, within IAI47_00125 at 27.049 kb on + strand, within IAI47_00125 at 27.050 kb on - strand, within IAI47_00125 at 27.050 kb on - strand, within IAI47_00125 at 27.050 kb on - strand, within IAI47_00125 at 27.055 kb on + strand, within IAI47_00125 at 27.055 kb on + strand, within IAI47_00125 at 27.217 kb on + strand, within IAI47_00125 at 27.218 kb on - strand, within IAI47_00125 at 27.276 kb on + strand, within IAI47_00125 at 27.277 kb on - strand, within IAI47_00125 at 27.277 kb on - strand, within IAI47_00125 at 27.336 kb on + strand, within IAI47_00125 at 27.336 kb on + strand, within IAI47_00125 at 27.336 kb on + strand, within IAI47_00125 at 27.337 kb on - strand, within IAI47_00125 at 27.337 kb on - strand, within IAI47_00125 at 27.337 kb on - strand, within IAI47_00125 at 27.391 kb on + strand, within IAI47_00125 at 27.391 kb on + strand, within IAI47_00125 at 27.392 kb on - strand, within IAI47_00125 at 27.455 kb on - strand, within IAI47_00125 at 27.507 kb on + strand at 27.507 kb on + strand at 27.508 kb on - strand at 27.547 kb on - strand at 27.547 kb on - strand at 27.547 kb on - strand at 27.630 kb on + strand at 27.657 kb on + strand at 27.657 kb on + strand at 27.658 kb on - strand at 27.669 kb on + strand at 27.669 kb on + strand at 27.670 kb on - strand at 27.670 kb on - strand at 27.670 kb on - strand at 27.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 3 remove 24,830 + IAI47_00115 0.25 +2.4 24,830 + IAI47_00115 0.25 -0.1 24,830 + IAI47_00115 0.25 -1.4 24,831 - IAI47_00115 0.25 -1.7 24,831 - IAI47_00115 0.25 -0.4 24,831 - IAI47_00115 0.25 -0.4 24,831 - IAI47_00115 0.25 +0.4 24,844 + IAI47_00115 0.26 +0.1 24,845 - IAI47_00115 0.26 +0.0 24,845 - IAI47_00115 0.26 +0.0 24,845 - IAI47_00115 0.26 -0.6 24,845 - IAI47_00115 0.26 +0.1 24,845 - IAI47_00115 0.26 -2.2 24,961 + IAI47_00115 0.35 -1.2 24,961 + IAI47_00115 0.35 +0.1 24,961 + IAI47_00115 0.35 -0.2 25,048 + IAI47_00115 0.42 -1.1 25,048 + IAI47_00115 0.42 -0.5 25,048 + IAI47_00115 0.42 -3.0 25,049 - IAI47_00115 0.42 -2.2 25,072 + IAI47_00115 0.44 -2.2 25,072 + IAI47_00115 0.44 +0.2 25,073 - IAI47_00115 0.44 +0.4 25,120 + IAI47_00115 0.48 -0.4 25,120 + IAI47_00115 0.48 +0.1 25,121 - IAI47_00115 0.48 -0.6 25,121 - IAI47_00115 0.48 +0.0 25,121 - IAI47_00115 0.48 -0.0 25,121 - IAI47_00115 0.48 +0.6 25,121 - IAI47_00115 0.48 -2.0 25,121 - IAI47_00115 0.48 -0.2 25,277 + IAI47_00115 0.60 -0.2 25,277 + IAI47_00115 0.60 -0.9 25,278 - IAI47_00115 0.60 +0.4 25,278 - IAI47_00115 0.60 +2.5 25,278 - IAI47_00115 0.60 -0.0 25,278 - IAI47_00115 0.60 +1.8 25,278 - IAI47_00115 0.60 -0.4 25,312 + IAI47_00115 0.63 -0.3 25,312 + IAI47_00115 0.63 +0.4 25,313 - IAI47_00115 0.63 -1.1 25,357 - IAI47_00115 0.66 +0.4 25,398 - IAI47_00115 0.69 +2.0 25,412 + IAI47_00115 0.70 -1.0 25,413 - IAI47_00115 0.70 -0.9 25,413 - IAI47_00115 0.70 -0.6 25,414 + IAI47_00115 0.71 -0.7 25,414 + IAI47_00115 0.71 -1.6 25,414 + IAI47_00115 0.71 -1.2 25,414 + IAI47_00115 0.71 -1.0 25,414 + IAI47_00115 0.71 +0.3 25,414 + IAI47_00115 0.71 -0.1 25,414 + IAI47_00115 0.71 -0.6 25,415 - IAI47_00115 0.71 +0.4 25,415 - IAI47_00115 0.71 -0.7 25,415 - IAI47_00115 0.71 +2.4 25,576 + IAI47_00115 0.83 -1.0 25,576 + IAI47_00115 0.83 -1.2 25,606 + IAI47_00115 0.86 +1.0 25,606 + IAI47_00115 0.86 -0.6 25,606 + IAI47_00115 0.86 +0.4 25,607 - IAI47_00115 0.86 -0.1 25,607 - IAI47_00115 0.86 -1.2 25,607 - IAI47_00115 0.86 +0.5 25,607 - IAI47_00115 0.86 -0.0 25,670 + +0.0 25,670 + -0.7 25,671 - -1.2 25,671 - +1.4 25,671 - -1.8 25,671 - -1.1 25,671 - +1.0 25,714 + -0.5 25,714 + +0.0 25,715 - -0.3 25,726 + -2.1 25,726 + +1.0 25,726 + -0.1 25,726 + +1.2 25,727 - +0.5 25,727 - +1.8 25,727 - +1.0 25,727 - -0.6 25,727 - +0.1 25,734 - -0.5 25,809 + +1.2 25,809 + -0.2 25,810 - +0.2 25,810 - -0.6 25,810 - -0.4 25,824 + +0.7 25,824 + +0.6 25,824 + +0.9 25,824 + +1.0 25,825 - -0.6 25,955 - IAI47_00120 0.14 +0.4 25,991 - IAI47_00120 0.17 -0.3 26,012 + IAI47_00120 0.20 +0.5 26,050 + IAI47_00120 0.24 +2.0 26,050 + IAI47_00120 0.24 +0.0 26,053 - IAI47_00120 0.24 -0.3 26,053 - IAI47_00120 0.24 -0.3 26,078 + IAI47_00120 0.27 +0.4 26,109 + IAI47_00120 0.30 +2.7 26,110 - IAI47_00120 0.30 +0.4 26,191 - IAI47_00120 0.38 -0.9 26,215 + IAI47_00120 0.41 -0.6 26,215 + IAI47_00120 0.41 +0.0 26,215 + IAI47_00120 0.41 +2.4 26,216 - IAI47_00120 0.41 +1.3 26,216 - IAI47_00120 0.41 +1.6 26,216 - IAI47_00120 0.41 +1.9 26,216 - IAI47_00120 0.41 -3.1 26,216 - IAI47_00120 0.41 +0.4 26,257 + IAI47_00120 0.45 +1.0 26,272 + IAI47_00120 0.47 +0.0 26,272 + IAI47_00120 0.47 -1.6 26,273 - IAI47_00120 0.47 +0.0 26,273 - IAI47_00120 0.47 -0.1 26,279 - IAI47_00120 0.47 -0.5 26,385 + IAI47_00120 0.59 +0.9 26,385 + IAI47_00120 0.59 +2.0 26,386 - IAI47_00120 0.59 -0.6 26,435 - IAI47_00120 0.64 -0.6 26,503 - IAI47_00120 0.71 +1.8 26,510 - IAI47_00120 0.72 +0.0 26,563 + IAI47_00120 0.77 +0.4 26,590 + IAI47_00120 0.80 -0.0 26,669 - IAI47_00120 0.88 -0.5 26,713 + -0.5 26,770 + +1.0 26,770 + -0.4 26,770 + -0.4 26,770 + -0.6 26,770 + -0.6 26,771 - +0.5 26,771 - +1.0 26,771 - +0.2 26,771 - +0.3 26,782 + -0.0 26,782 + -0.7 26,782 + -0.3 26,782 + -2.0 26,782 + +1.4 26,782 + -0.9 26,782 + +1.4 26,782 + +1.7 26,782 + +0.7 26,782 + +0.4 26,783 - -0.0 26,783 - +0.6 26,783 - -0.6 26,783 - -0.0 26,783 - -0.0 26,793 + -2.6 26,793 + -0.3 26,793 + +1.0 26,794 - +1.4 26,794 - +0.2 26,794 - +2.0 26,794 - -2.0 26,801 - +0.4 26,817 + +0.4 26,817 + -0.2 26,817 + -0.0 26,817 + -1.5 26,818 - -0.6 26,818 - +1.7 26,818 - +0.7 26,818 - -0.6 26,867 - IAI47_00125 0.10 -1.2 26,950 + IAI47_00125 0.21 +2.6 26,950 + IAI47_00125 0.21 -1.0 26,951 - IAI47_00125 0.21 -1.1 26,951 - IAI47_00125 0.21 +1.2 26,951 - IAI47_00125 0.21 -0.0 26,951 - IAI47_00125 0.21 -0.1 26,985 + IAI47_00125 0.26 -1.0 26,985 + IAI47_00125 0.26 +1.6 26,985 + IAI47_00125 0.26 -0.1 26,985 + IAI47_00125 0.26 -0.6 26,985 + IAI47_00125 0.26 -0.3 26,986 - IAI47_00125 0.26 -0.3 26,986 - IAI47_00125 0.26 +0.7 26,986 - IAI47_00125 0.26 -0.8 26,986 - IAI47_00125 0.26 +0.4 26,986 - IAI47_00125 0.26 +0.4 27,049 + IAI47_00125 0.34 +0.4 27,049 + IAI47_00125 0.34 +0.3 27,049 + IAI47_00125 0.34 +0.7 27,050 - IAI47_00125 0.34 +0.4 27,050 - IAI47_00125 0.34 -1.6 27,050 - IAI47_00125 0.34 +1.2 27,055 + IAI47_00125 0.35 -0.2 27,055 + IAI47_00125 0.35 -0.6 27,217 + IAI47_00125 0.57 +0.5 27,218 - IAI47_00125 0.57 -0.4 27,276 + IAI47_00125 0.65 -3.0 27,277 - IAI47_00125 0.65 +0.4 27,277 - IAI47_00125 0.65 -1.1 27,336 + IAI47_00125 0.73 +1.1 27,336 + IAI47_00125 0.73 +0.4 27,336 + IAI47_00125 0.73 -0.0 27,337 - IAI47_00125 0.73 -2.0 27,337 - IAI47_00125 0.73 +0.1 27,337 - IAI47_00125 0.73 -1.2 27,391 + IAI47_00125 0.80 +0.4 27,391 + IAI47_00125 0.80 +0.4 27,392 - IAI47_00125 0.80 +2.0 27,455 - IAI47_00125 0.88 +0.8 27,507 + +0.4 27,507 + -0.3 27,508 - +0.6 27,547 - +0.4 27,547 - +2.0 27,547 - -0.5 27,630 + -0.0 27,657 + -1.2 27,657 + -0.2 27,658 - +1.9 27,669 + +0.4 27,669 + +1.8 27,670 - +0.1 27,670 - +0.6 27,670 - +0.3 27,764 + +0.9
Or see this region's nucleotide sequence