Strain Fitness in Pantoea sp. MT58 around IAI47_21850

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
119,170	+		IAI47_21845	0.21	+1.4
119,262	+		IAI47_21845	0.29	+0.6
119,262	+		IAI47_21845	0.29	+0.5
119,365	+		IAI47_21845	0.38	+0.7
119,366	-		IAI47_21845	0.38	+0.7
119,366	-		IAI47_21845	0.38	-1.2
119,366	-		IAI47_21845	0.38	+0.4
119,366	-		IAI47_21845	0.38	+0.8
119,401	+		IAI47_21845	0.41	-1.6
119,401	+		IAI47_21845	0.41	+0.3
119,402	-		IAI47_21845	0.41	+0.2
119,489	+		IAI47_21845	0.48	-0.2
119,490	-		IAI47_21845	0.48	-0.8
119,580	+		IAI47_21845	0.56	-0.4
119,581	-		IAI47_21845	0.56	-1.2
119,581	-		IAI47_21845	0.56	+0.1
119,581	-		IAI47_21845	0.56	+0.2
119,607	+		IAI47_21845	0.58	-0.3
119,607	+		IAI47_21845	0.58	+1.6
119,607	+		IAI47_21845	0.58	+1.2
119,607	+		IAI47_21845	0.58	-0.1
119,607	+		IAI47_21845	0.58	+1.4
119,607	+		IAI47_21845	0.58	-0.2
119,607	+		IAI47_21845	0.58	+0.4
119,607	+		IAI47_21845	0.58	+0.6
119,607	+		IAI47_21845	0.58	-1.6
119,607	+		IAI47_21845	0.58	-0.6
119,608	-		IAI47_21845	0.58	+0.4
119,608	-		IAI47_21845	0.58	+1.4
119,608	-		IAI47_21845	0.58	+2.3
119,608	-		IAI47_21845	0.58	+0.4
119,608	-		IAI47_21845	0.58	+1.4
119,608	-		IAI47_21845	0.58	-0.2
119,608	-		IAI47_21845	0.58	+0.5
119,608	-		IAI47_21845	0.58	+2.2
119,608	-		IAI47_21845	0.58	+0.2
119,610	+		IAI47_21845	0.58	-0.2
119,611	-		IAI47_21845	0.58	-1.1
119,611	-		IAI47_21845	0.58	-1.4
119,611	-		IAI47_21845	0.58	+0.7
119,611	-		IAI47_21845	0.58	+0.2
119,647	+		IAI47_21845	0.61	+0.4
119,647	+		IAI47_21845	0.61	+2.0
119,647	+		IAI47_21845	0.61	-0.5
119,647	+		IAI47_21845	0.61	-0.6
119,647	+		IAI47_21845	0.61	+0.4
119,647	+		IAI47_21845	0.61	-2.2
119,648	-		IAI47_21845	0.61	-0.2
119,648	-		IAI47_21845	0.61	+0.4
119,648	-		IAI47_21845	0.61	+1.1
119,648	-		IAI47_21845	0.61	+1.0
119,736	+		IAI47_21845	0.69	+0.8
119,736	+		IAI47_21845	0.69	+2.9
119,736	+		IAI47_21845	0.69	+0.1
119,736	+		IAI47_21845	0.69	+0.4
119,737	-		IAI47_21845	0.69	+0.5
119,737	-		IAI47_21845	0.69	-0.9
119,758	+		IAI47_21845	0.71	-0.6
119,778	-		IAI47_21845	0.72	-2.8
119,799	+		IAI47_21845	0.74	-0.6
119,799	+		IAI47_21845	0.74	+0.5
119,799	+		IAI47_21845	0.74	-0.2
119,799	+		IAI47_21845	0.74	+0.8
119,800	-		IAI47_21845	0.74	-0.2
119,800	-		IAI47_21845	0.74	+0.1
119,800	-		IAI47_21845	0.74	-0.6
119,800	-		IAI47_21845	0.74	+0.7
119,800	-		IAI47_21845	0.74	-2.2
119,860	+		IAI47_21845	0.79	-1.3
119,860	+		IAI47_21845	0.79	+0.1
119,860	+		IAI47_21845	0.79	+0.4
119,861	-		IAI47_21845	0.79	-0.6
119,861	-		IAI47_21845	0.79	-0.4
119,877	+		IAI47_21845	0.81	+1.2
119,881	+		IAI47_21845	0.81	-0.1
119,881	+		IAI47_21845	0.81	+0.9
119,882	-		IAI47_21845	0.81	-0.1
119,882	-		IAI47_21845	0.81	+0.4
119,882	-		IAI47_21845	0.81	+0.9
119,882	-		IAI47_21845	0.81	+0.0
119,991	+				+0.4
119,991	+				+0.8
119,992	-				+0.4
119,992	-				-1.0
120,003	+				+1.4
120,003	+				+1.0
120,003	+				+0.4
120,003	+				+0.2
120,003	+				-0.2
120,004	-				+1.4
120,004	-				+1.6
120,004	-				+0.8
120,004	-				-0.2
120,004	-				+0.0
120,004	-				-0.6
120,004	-				+0.4
120,004	-				-1.2
120,004	-				-0.7
120,004	-				-0.4
120,004	-				+0.3
120,006	+				-0.4
120,007	-				+0.7
120,007	-				-1.0
120,007	-				-0.2
120,073	-				+0.4
120,109	+				+1.3
120,109	+				+0.4
120,109	+				+0.2
120,110	-				-0.8
120,110	-				+0.9
120,110	-				-0.8
120,110	-				+0.5
120,110	-				-0.8
120,110	-				+1.4
120,114	+				-1.4
120,114	+				+1.3
120,114	+				+0.4
120,114	+				-0.6
120,114	+				-0.6
120,114	+				+0.4
120,114	+				-1.2
120,115	-				+2.1
120,115	-				+0.8
120,115	-				+1.4
120,115	-				-0.3
120,115	-				-1.2
120,160	+				-1.0
120,160	+				-2.3
120,160	+				-0.2
120,161	-				-0.6
120,161	-				-0.4
120,172	+				-0.7
120,172	+				-0.6
120,172	+				-0.3
120,185	-				+0.4
120,220	+				-1.6
120,220	+				-0.2
120,220	+				-1.6
120,221	-				+0.6
120,221	-				+0.6
120,221	-				+0.2
120,221	-				-0.6
120,221	-				-1.4
120,260	+		IAI47_21850	0.12	-0.2
120,260	+		IAI47_21850	0.12	+0.4
120,265	+		IAI47_21850	0.12	+0.8
120,266	-		IAI47_21850	0.13	+0.4
120,291	+		IAI47_21850	0.15	-0.3
120,291	+		IAI47_21850	0.15	-1.3
120,291	+		IAI47_21850	0.15	-1.8
120,292	-		IAI47_21850	0.15	-0.6
120,297	+		IAI47_21850	0.16	-0.1
120,297	+		IAI47_21850	0.16	-0.9
120,297	+		IAI47_21850	0.16	+0.5
120,298	-		IAI47_21850	0.16	-1.0
120,298	-		IAI47_21850	0.16	+1.4
120,298	-		IAI47_21850	0.16	-1.6
120,298	-		IAI47_21850	0.16	+1.4
120,298	-		IAI47_21850	0.16	-1.9
120,298	-		IAI47_21850	0.16	-1.3
120,343	+		IAI47_21850	0.20	-0.2
120,343	+		IAI47_21850	0.20	-1.5
120,343	+		IAI47_21850	0.20	+0.4
120,343	+		IAI47_21850	0.20	-2.2
120,343	+		IAI47_21850	0.20	+0.4
120,343	+		IAI47_21850	0.20	+0.0
120,343	+		IAI47_21850	0.20	-0.8
120,343	+		IAI47_21850	0.20	-0.8
120,344	-		IAI47_21850	0.20	-0.8
120,344	-		IAI47_21850	0.20	-0.6
120,344	-		IAI47_21850	0.20	+0.2
120,358	-		IAI47_21850	0.22	+0.7
120,358	-		IAI47_21850	0.22	-0.4
120,427	+		IAI47_21850	0.29	-0.8
120,451	-		IAI47_21850	0.31	-1.4
120,468	+		IAI47_21850	0.33	-0.8
120,468	+		IAI47_21850	0.33	-0.6
120,468	+		IAI47_21850	0.33	-0.1
120,468	+		IAI47_21850	0.33	-0.3
120,468	+		IAI47_21850	0.33	-1.8
120,468	+		IAI47_21850	0.33	+1.0
120,469	-		IAI47_21850	0.33	-0.4
120,469	-		IAI47_21850	0.33	+0.4
120,469	-		IAI47_21850	0.33	-1.2
120,469	-		IAI47_21850	0.33	+0.0
120,469	-		IAI47_21850	0.33	+0.1
120,469	-		IAI47_21850	0.33	-1.4
120,473	-		IAI47_21850	0.33	+0.0
120,473	-		IAI47_21850	0.33	-0.6
120,473	-		IAI47_21850	0.33	-0.4
120,481	+		IAI47_21850	0.34	-0.9
120,482	-		IAI47_21850	0.34	-0.9
120,581	-		IAI47_21850	0.44	+1.0
120,581	-		IAI47_21850	0.44	-0.1
120,581	-		IAI47_21850	0.44	-0.9
120,581	-		IAI47_21850	0.44	+0.4
120,585	+		IAI47_21850	0.44	-1.8
120,585	+		IAI47_21850	0.44	-1.6
120,585	+		IAI47_21850	0.44	-1.3
120,585	+		IAI47_21850	0.44	+0.3
120,585	+		IAI47_21850	0.44	-0.5
120,585	+		IAI47_21850	0.44	-0.2
120,586	-		IAI47_21850	0.44	+0.6
120,586	-		IAI47_21850	0.44	-1.6
120,586	-		IAI47_21850	0.44	+1.0
120,586	-		IAI47_21850	0.44	-1.6
120,634	+		IAI47_21850	0.49	-0.6
120,634	+		IAI47_21850	0.49	-2.4
120,634	+		IAI47_21850	0.49	-1.0
120,641	+		IAI47_21850	0.50	+0.7
120,670	+		IAI47_21850	0.53	+0.7
120,670	+		IAI47_21850	0.53	-0.6
120,670	+		IAI47_21850	0.53	-1.7
120,670	+		IAI47_21850	0.53	-0.9
120,670	+		IAI47_21850	0.53	-2.6
120,670	+		IAI47_21850	0.53	-1.9
120,670	+		IAI47_21850	0.53	+0.1
120,670	+		IAI47_21850	0.53	+0.2
120,671	-		IAI47_21850	0.53	+2.4
120,671	-		IAI47_21850	0.53	-1.4
120,671	-		IAI47_21850	0.53	+0.4
120,671	-		IAI47_21850	0.53	-1.2
120,671	-		IAI47_21850	0.53	+0.4
120,671	-		IAI47_21850	0.53	-0.8
120,671	-		IAI47_21850	0.53	-0.1
120,671	-		IAI47_21850	0.53	-1.2
120,673	+		IAI47_21850	0.53	-2.2
120,673	+		IAI47_21850	0.53	-1.8
120,673	+		IAI47_21850	0.53	-1.6
120,673	+		IAI47_21850	0.53	-0.5
120,673	+		IAI47_21850	0.53	-1.9
120,673	+		IAI47_21850	0.53	+0.4
120,674	-		IAI47_21850	0.53	-0.6
120,674	-		IAI47_21850	0.53	-0.6
120,674	-		IAI47_21850	0.53	+1.4
120,674	-		IAI47_21850	0.53	-0.2
120,729	+		IAI47_21850	0.59	-1.1
120,729	+		IAI47_21850	0.59	+2.0
120,729	+		IAI47_21850	0.59	-0.6
120,729	+		IAI47_21850	0.59	+0.2
120,729	+		IAI47_21850	0.59	+0.4
120,729	+		IAI47_21850	0.59	-2.6
120,729	+		IAI47_21850	0.59	-1.4
120,729	+		IAI47_21850	0.59	-1.2
120,729	+		IAI47_21850	0.59	-2.2
120,730	-		IAI47_21850	0.59	-0.5
120,730	-		IAI47_21850	0.59	-0.6
120,730	-		IAI47_21850	0.59	-1.6
120,730	-		IAI47_21850	0.59	+1.0
120,730	-		IAI47_21850	0.59	-3.3
120,730	-		IAI47_21850	0.59	-0.6
120,730	-		IAI47_21850	0.59	+0.1
120,730	-		IAI47_21850	0.59	-0.4
120,748	+		IAI47_21850	0.60	+0.0
120,749	-		IAI47_21850	0.61	-0.6
120,749	-		IAI47_21850	0.61	-2.2
120,749	-		IAI47_21850	0.61	+0.8
120,749	-		IAI47_21850	0.61	-1.6
120,910	+		IAI47_21850	0.77	-0.4
120,940	+		IAI47_21850	0.80	+0.6
120,940	+		IAI47_21850	0.80	-0.2
120,940	+		IAI47_21850	0.80	-0.6
120,940	+		IAI47_21850	0.80	+0.4
120,941	-		IAI47_21850	0.80	-0.3
120,941	-		IAI47_21850	0.80	+0.7
120,941	-		IAI47_21850	0.80	+1.2
120,987	+		IAI47_21850	0.84	+0.7
120,987	+		IAI47_21850	0.84	-0.8
120,987	+		IAI47_21850	0.84	+0.2
120,988	-		IAI47_21850	0.84	+0.4
121,009	+		IAI47_21850	0.86	+0.2
121,009	+		IAI47_21850	0.86	-1.3
121,009	+		IAI47_21850	0.86	-0.2
121,009	+		IAI47_21850	0.86	-0.9
121,010	-		IAI47_21850	0.87	+1.6
121,010	-		IAI47_21850	0.87	+0.4
121,010	-		IAI47_21850	0.87	-1.2
121,010	-		IAI47_21850	0.87	-0.3
121,044	-				-0.6
121,120	+				-1.2
121,120	+				+0.4
121,120	+				-2.8
121,120	+				-0.8
121,120	+				-0.9
121,121	-				-0.6
121,121	-				-0.4
121,121	-				+0.8
121,124	-				+0.4
121,124	-				+0.2
121,124	-				+1.4
121,124	-				-2.4
121,124	-				+0.0
121,171	+				+0.8
121,171	+				+0.4
121,172	-				-1.6
121,172	-				+0.0
121,175	+				-0.6
121,175	+				-1.2
121,175	+				+2.0
121,175	+				-0.2
121,175	+				-0.3
121,176	-				+1.4
121,176	-				-0.1
121,176	-				-1.9
121,176	-				+1.6
121,176	-				+0.0
121,176	-				-0.2
121,180	+				+0.1
121,181	-				+0.6
121,181	-				-1.2
121,181	-				+0.9
121,266	-				+0.1
121,266	-				-0.4
121,272	+				+0.6
121,272	+				-0.4
121,272	+				-1.9
121,273	-				-1.6
121,344	+		IAI47_21855	0.12	-0.8
121,367	+		IAI47_21855	0.14	-0.6
121,367	+		IAI47_21855	0.14	+0.3
121,367	+		IAI47_21855	0.14	+1.2
121,367	+		IAI47_21855	0.14	-2.4
121,368	-		IAI47_21855	0.14	+0.7
121,368	-		IAI47_21855	0.14	-1.3
121,368	-		IAI47_21855	0.14	+0.6
121,368	-		IAI47_21855	0.14	-1.2
121,368	-		IAI47_21855	0.14	+1.6
121,440	+		IAI47_21855	0.19	+0.1
121,506	+		IAI47_21855	0.24	-0.8
121,506	+		IAI47_21855	0.24	+0.6
121,506	+		IAI47_21855	0.24	+0.0
121,507	-		IAI47_21855	0.24	-0.6
121,507	-		IAI47_21855	0.24	-0.6
121,507	-		IAI47_21855	0.24	+0.4
121,507	-		IAI47_21855	0.24	+2.0
121,533	+		IAI47_21855	0.25	+0.4
121,533	+		IAI47_21855	0.25	-1.5
121,533	+		IAI47_21855	0.25	-1.2
121,534	-		IAI47_21855	0.26	+0.0
121,534	-		IAI47_21855	0.26	+1.2
121,534	-		IAI47_21855	0.26	+1.9
121,534	-		IAI47_21855	0.26	-0.6
121,534	-		IAI47_21855	0.26	+0.5
121,534	-		IAI47_21855	0.26	+0.6
121,535	+		IAI47_21855	0.26	+0.4
121,535	+		IAI47_21855	0.26	-0.3
121,535	+		IAI47_21855	0.26	-1.4
121,535	+		IAI47_21855	0.26	+0.0
121,535	+		IAI47_21855	0.26	+1.6
121,536	-		IAI47_21855	0.26	+0.4
121,536	-		IAI47_21855	0.26	+0.1
121,536	-		IAI47_21855	0.26	-0.4
121,536	-		IAI47_21855	0.26	+0.3
121,536	-		IAI47_21855	0.26	+0.4
121,536	-		IAI47_21855	0.26	+0.8
121,536	-		IAI47_21855	0.26	-1.4
121,536	-		IAI47_21855	0.26	+0.2
121,536	-		IAI47_21855	0.26	+1.3
121,731	+		IAI47_21855	0.40	+1.4
121,731	+		IAI47_21855	0.40	-0.4
121,731	+		IAI47_21855	0.40	-1.6
121,731	+		IAI47_21855	0.40	+0.4
121,732	-		IAI47_21855	0.40	+0.6
121,732	-		IAI47_21855	0.40	-0.0
121,732	-		IAI47_21855	0.40	+1.7
121,732	-		IAI47_21855	0.40	+0.7
121,732	-		IAI47_21855	0.40	-0.1
121,732	-		IAI47_21855	0.40	-0.4
121,745	+		IAI47_21855	0.40	+0.8
121,745	+		IAI47_21855	0.40	-0.7
121,790	+		IAI47_21855	0.44	+0.0
121,790	+		IAI47_21855	0.44	+1.2
121,791	-		IAI47_21855	0.44	+1.6
121,791	-		IAI47_21855	0.44	+0.1
121,791	-		IAI47_21855	0.44	-1.2
121,791	-		IAI47_21855	0.44	-0.9
121,792	+		IAI47_21855	0.44	-0.3
121,792	+		IAI47_21855	0.44	+0.7
121,792	+		IAI47_21855	0.44	-0.2
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