Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19270 and IAI47_19275 are separated by 116 nucleotides IAI47_19275 and IAI47_19280 are separated by 93 nucleotides
IAI47_19270: IAI47_19270 - alpha/beta fold hydrolase, at 81,547 to 82,311
_19270
IAI47_19275: IAI47_19275 - DMT family transporter, at 82,428 to 82,962
_19275
IAI47_19280: IAI47_19280 - PLP-dependent aminotransferase family protein, at 83,056 to 84,342
_19280
Position (kb) 82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 81.457 kb on + strand at 81.457 kb on + strand at 81.457 kb on + strand at 81.458 kb on - strand at 81.458 kb on - strand at 81.458 kb on - strand at 81.500 kb on - strand at 81.508 kb on + strand at 81.557 kb on - strand at 81.557 kb on - strand at 81.567 kb on - strand at 81.567 kb on - strand at 81.602 kb on + strand at 81.602 kb on + strand at 81.603 kb on - strand at 81.615 kb on + strand at 81.615 kb on + strand at 81.616 kb on - strand at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.685 kb on + strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.686 kb on - strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.714 kb on + strand, within IAI47_19270 at 81.715 kb on - strand, within IAI47_19270 at 81.715 kb on - strand, within IAI47_19270 at 81.848 kb on + strand, within IAI47_19270 at 81.898 kb on + strand, within IAI47_19270 at 81.899 kb on - strand, within IAI47_19270 at 81.899 kb on - strand, within IAI47_19270 at 81.954 kb on + strand, within IAI47_19270 at 82.002 kb on + strand, within IAI47_19270 at 82.003 kb on - strand, within IAI47_19270 at 82.003 kb on - strand, within IAI47_19270 at 82.204 kb on - strand, within IAI47_19270 at 82.204 kb on - strand, within IAI47_19270 at 82.317 kb on - strand at 82.333 kb on + strand at 82.333 kb on + strand at 82.333 kb on + strand at 82.334 kb on - strand at 82.334 kb on - strand at 82.378 kb on + strand at 82.379 kb on - strand at 82.391 kb on - strand at 82.458 kb on - strand at 82.458 kb on - strand at 82.458 kb on - strand at 82.458 kb on - strand at 82.466 kb on + strand at 82.481 kb on + strand at 82.482 kb on - strand, within IAI47_19275 at 82.616 kb on - strand, within IAI47_19275 at 82.623 kb on + strand, within IAI47_19275 at 82.623 kb on + strand, within IAI47_19275 at 82.623 kb on + strand, within IAI47_19275 at 82.674 kb on - strand, within IAI47_19275 at 82.674 kb on - strand, within IAI47_19275 at 82.714 kb on - strand, within IAI47_19275 at 82.714 kb on - strand, within IAI47_19275 at 82.714 kb on - strand, within IAI47_19275 at 82.714 kb on - strand, within IAI47_19275 at 82.785 kb on - strand, within IAI47_19275 at 82.787 kb on + strand, within IAI47_19275 at 82.787 kb on + strand, within IAI47_19275 at 82.788 kb on - strand, within IAI47_19275 at 82.788 kb on - strand, within IAI47_19275 at 82.788 kb on - strand, within IAI47_19275 at 82.831 kb on + strand, within IAI47_19275 at 82.832 kb on - strand, within IAI47_19275 at 82.913 kb on - strand at 82.913 kb on - strand at 82.920 kb on + strand at 82.921 kb on - strand at 82.958 kb on + strand at 82.958 kb on + strand at 82.958 kb on + strand at 82.958 kb on + strand at 82.958 kb on + strand at 82.958 kb on + strand at 82.958 kb on + strand at 82.959 kb on - strand at 82.959 kb on - strand at 82.959 kb on - strand at 82.959 kb on - strand at 82.962 kb on + strand at 82.962 kb on + strand at 82.962 kb on + strand at 82.962 kb on + strand at 82.962 kb on + strand at 82.962 kb on + strand at 82.962 kb on + strand at 82.963 kb on - strand at 82.963 kb on - strand at 82.963 kb on - strand at 82.963 kb on - strand at 82.963 kb on - strand at 83.005 kb on + strand at 83.010 kb on + strand at 83.011 kb on - strand at 83.014 kb on + strand at 83.015 kb on - strand at 83.015 kb on - strand at 83.015 kb on - strand at 83.015 kb on - strand at 83.015 kb on - strand at 83.015 kb on - strand at 83.015 kb on - strand at 83.098 kb on + strand at 83.099 kb on - strand at 83.101 kb on + strand at 83.101 kb on + strand at 83.101 kb on + strand at 83.101 kb on + strand at 83.101 kb on + strand at 83.102 kb on - strand at 83.102 kb on - strand at 83.102 kb on - strand at 83.102 kb on - strand at 83.102 kb on - strand at 83.102 kb on - strand at 83.198 kb on + strand, within IAI47_19280 at 83.205 kb on + strand, within IAI47_19280 at 83.206 kb on - strand, within IAI47_19280 at 83.206 kb on - strand, within IAI47_19280 at 83.235 kb on + strand, within IAI47_19280 at 83.236 kb on - strand, within IAI47_19280 at 83.236 kb on - strand, within IAI47_19280 at 83.236 kb on - strand, within IAI47_19280 at 83.268 kb on + strand, within IAI47_19280 at 83.275 kb on + strand, within IAI47_19280 at 83.275 kb on + strand, within IAI47_19280 at 83.276 kb on - strand, within IAI47_19280 at 83.344 kb on + strand, within IAI47_19280 at 83.345 kb on - strand, within IAI47_19280 at 83.345 kb on - strand, within IAI47_19280 at 83.432 kb on + strand, within IAI47_19280 at 83.432 kb on + strand, within IAI47_19280 at 83.432 kb on + strand, within IAI47_19280 at 83.432 kb on + strand, within IAI47_19280 at 83.432 kb on + strand, within IAI47_19280 at 83.433 kb on - strand, within IAI47_19280 at 83.433 kb on - strand, within IAI47_19280 at 83.433 kb on - strand, within IAI47_19280 at 83.433 kb on - strand, within IAI47_19280 at 83.433 kb on - strand, within IAI47_19280 at 83.433 kb on - strand, within IAI47_19280 at 83.500 kb on - strand, within IAI47_19280 at 83.500 kb on - strand, within IAI47_19280 at 83.520 kb on + strand, within IAI47_19280 at 83.520 kb on + strand, within IAI47_19280 at 83.537 kb on - strand, within IAI47_19280 at 83.540 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.541 kb on + strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.542 kb on - strand, within IAI47_19280 at 83.565 kb on + strand, within IAI47_19280 at 83.566 kb on - strand, within IAI47_19280 at 83.566 kb on - strand, within IAI47_19280 at 83.566 kb on - strand, within IAI47_19280 at 83.566 kb on - strand, within IAI47_19280 at 83.581 kb on - strand, within IAI47_19280 at 83.656 kb on - strand, within IAI47_19280 at 83.753 kb on + strand, within IAI47_19280 at 83.753 kb on + strand, within IAI47_19280 at 83.753 kb on + strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.754 kb on - strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.765 kb on + strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.766 kb on - strand, within IAI47_19280 at 83.767 kb on + strand, within IAI47_19280 at 83.767 kb on + strand, within IAI47_19280 at 83.767 kb on + strand, within IAI47_19280 at 83.767 kb on + strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.768 kb on - strand, within IAI47_19280 at 83.790 kb on + strand, within IAI47_19280 at 83.851 kb on + strand, within IAI47_19280 at 83.852 kb on - strand, within IAI47_19280 at 83.852 kb on - strand, within IAI47_19280 at 83.935 kb on - strand, within IAI47_19280 at 83.935 kb on - strand, within IAI47_19280 at 83.960 kb on + strand, within IAI47_19280 at 83.960 kb on + strand, within IAI47_19280
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 81,457 + -0.7 81,457 + -0.6 81,457 + +0.1 81,458 - +0.1 81,458 - -0.6 81,458 - +1.6 81,500 - +2.4 81,508 + +0.2 81,557 - +0.5 81,557 - +1.1 81,567 - -1.3 81,567 - +0.5 81,602 + -0.5 81,602 + +2.1 81,603 - -0.9 81,615 + -1.3 81,615 + -0.9 81,616 - +1.1 81,685 + IAI47_19270 0.18 +0.1 81,685 + IAI47_19270 0.18 -0.8 81,685 + IAI47_19270 0.18 -0.5 81,685 + IAI47_19270 0.18 +1.2 81,685 + IAI47_19270 0.18 +0.6 81,686 - IAI47_19270 0.18 -0.3 81,686 - IAI47_19270 0.18 -0.9 81,686 - IAI47_19270 0.18 +0.5 81,686 - IAI47_19270 0.18 +0.4 81,686 - IAI47_19270 0.18 -0.3 81,686 - IAI47_19270 0.18 +0.1 81,714 + IAI47_19270 0.22 +1.2 81,714 + IAI47_19270 0.22 +0.2 81,714 + IAI47_19270 0.22 +0.1 81,715 - IAI47_19270 0.22 +0.5 81,715 - IAI47_19270 0.22 -0.7 81,848 + IAI47_19270 0.39 +1.3 81,898 + IAI47_19270 0.46 -0.2 81,899 - IAI47_19270 0.46 -1.2 81,899 - IAI47_19270 0.46 +1.1 81,954 + IAI47_19270 0.53 -1.4 82,002 + IAI47_19270 0.59 +0.3 82,003 - IAI47_19270 0.60 -0.9 82,003 - IAI47_19270 0.60 -0.1 82,204 - IAI47_19270 0.86 -0.9 82,204 - IAI47_19270 0.86 -0.2 82,317 - +0.4 82,333 + -0.1 82,333 + -3.4 82,333 + +0.1 82,334 - -0.5 82,334 - +0.3 82,378 + +0.8 82,379 - +0.4 82,391 - +1.4 82,458 - +1.1 82,458 - -0.4 82,458 - +0.6 82,458 - -0.3 82,466 + -0.6 82,481 + -0.1 82,482 - IAI47_19275 0.10 +1.4 82,616 - IAI47_19275 0.35 -0.3 82,623 + IAI47_19275 0.36 +0.3 82,623 + IAI47_19275 0.36 -0.9 82,623 + IAI47_19275 0.36 -0.5 82,674 - IAI47_19275 0.46 +0.9 82,674 - IAI47_19275 0.46 +2.1 82,714 - IAI47_19275 0.53 +0.5 82,714 - IAI47_19275 0.53 +1.0 82,714 - IAI47_19275 0.53 -0.5 82,714 - IAI47_19275 0.53 -0.2 82,785 - IAI47_19275 0.67 -0.5 82,787 + IAI47_19275 0.67 -0.5 82,787 + IAI47_19275 0.67 -0.5 82,788 - IAI47_19275 0.67 -0.2 82,788 - IAI47_19275 0.67 -2.7 82,788 - IAI47_19275 0.67 -2.0 82,831 + IAI47_19275 0.75 -0.7 82,832 - IAI47_19275 0.76 -1.2 82,913 - +0.1 82,913 - -0.2 82,920 + +0.6 82,921 - -0.2 82,958 + +0.8 82,958 + -0.7 82,958 + -0.6 82,958 + +0.6 82,958 + -1.7 82,958 + -2.4 82,958 + +0.5 82,959 - -0.8 82,959 - -0.4 82,959 - +0.5 82,959 - +1.1 82,962 + -0.5 82,962 + -0.2 82,962 + +0.1 82,962 + -0.9 82,962 + +0.7 82,962 + -0.8 82,962 + +0.7 82,963 - +3.2 82,963 - -0.6 82,963 - +0.1 82,963 - +2.1 82,963 - -0.9 83,005 + -0.9 83,010 + -0.8 83,011 - -0.6 83,014 + +0.8 83,015 - +2.6 83,015 - -0.9 83,015 - +0.1 83,015 - -1.1 83,015 - +0.4 83,015 - +1.1 83,015 - -0.3 83,098 + +0.6 83,099 - +0.5 83,101 + -1.3 83,101 + +0.8 83,101 + -0.0 83,101 + +0.1 83,101 + -0.6 83,102 - +0.3 83,102 - +0.1 83,102 - +0.4 83,102 - +0.1 83,102 - +1.1 83,102 - +0.9 83,198 + IAI47_19280 0.11 +0.6 83,205 + IAI47_19280 0.12 +1.9 83,206 - IAI47_19280 0.12 -0.9 83,206 - IAI47_19280 0.12 +1.4 83,235 + IAI47_19280 0.14 -0.5 83,236 - IAI47_19280 0.14 -0.9 83,236 - IAI47_19280 0.14 +0.9 83,236 - IAI47_19280 0.14 +0.1 83,268 + IAI47_19280 0.16 -0.1 83,275 + IAI47_19280 0.17 -0.2 83,275 + IAI47_19280 0.17 +2.6 83,276 - IAI47_19280 0.17 -0.9 83,344 + IAI47_19280 0.22 -0.9 83,345 - IAI47_19280 0.22 -0.4 83,345 - IAI47_19280 0.22 -0.6 83,432 + IAI47_19280 0.29 -0.2 83,432 + IAI47_19280 0.29 +0.5 83,432 + IAI47_19280 0.29 +0.4 83,432 + IAI47_19280 0.29 +0.6 83,432 + IAI47_19280 0.29 +0.3 83,433 - IAI47_19280 0.29 +1.4 83,433 - IAI47_19280 0.29 +0.1 83,433 - IAI47_19280 0.29 -0.0 83,433 - IAI47_19280 0.29 -1.5 83,433 - IAI47_19280 0.29 +2.1 83,433 - IAI47_19280 0.29 +1.0 83,500 - IAI47_19280 0.34 -0.5 83,500 - IAI47_19280 0.34 +0.9 83,520 + IAI47_19280 0.36 +0.1 83,520 + IAI47_19280 0.36 +0.1 83,537 - IAI47_19280 0.37 -0.6 83,540 + IAI47_19280 0.38 +1.2 83,541 + IAI47_19280 0.38 +0.4 83,541 + IAI47_19280 0.38 +1.9 83,541 + IAI47_19280 0.38 -0.1 83,541 + IAI47_19280 0.38 +0.1 83,541 + IAI47_19280 0.38 -0.4 83,541 + IAI47_19280 0.38 -0.3 83,541 + IAI47_19280 0.38 -0.3 83,542 - IAI47_19280 0.38 -0.6 83,542 - IAI47_19280 0.38 -0.9 83,542 - IAI47_19280 0.38 +0.1 83,542 - IAI47_19280 0.38 +0.6 83,542 - IAI47_19280 0.38 -0.9 83,542 - IAI47_19280 0.38 -1.9 83,542 - IAI47_19280 0.38 +0.8 83,542 - IAI47_19280 0.38 +0.8 83,542 - IAI47_19280 0.38 +1.7 83,565 + IAI47_19280 0.40 +1.6 83,566 - IAI47_19280 0.40 +0.2 83,566 - IAI47_19280 0.40 +1.4 83,566 - IAI47_19280 0.40 -0.4 83,566 - IAI47_19280 0.40 +2.0 83,581 - IAI47_19280 0.41 +0.8 83,656 - IAI47_19280 0.47 +1.9 83,753 + IAI47_19280 0.54 -0.7 83,753 + IAI47_19280 0.54 -0.8 83,753 + IAI47_19280 0.54 -0.4 83,754 - IAI47_19280 0.54 +2.1 83,754 - IAI47_19280 0.54 +1.6 83,754 - IAI47_19280 0.54 -0.5 83,754 - IAI47_19280 0.54 +1.0 83,754 - IAI47_19280 0.54 -0.5 83,754 - IAI47_19280 0.54 -0.5 83,754 - IAI47_19280 0.54 -0.5 83,754 - IAI47_19280 0.54 -0.9 83,765 + IAI47_19280 0.55 +0.4 83,765 + IAI47_19280 0.55 -0.7 83,765 + IAI47_19280 0.55 +0.9 83,765 + IAI47_19280 0.55 -0.2 83,765 + IAI47_19280 0.55 +0.1 83,765 + IAI47_19280 0.55 +0.6 83,765 + IAI47_19280 0.55 -1.4 83,765 + IAI47_19280 0.55 -0.5 83,765 + IAI47_19280 0.55 +1.2 83,766 - IAI47_19280 0.55 +1.6 83,766 - IAI47_19280 0.55 -0.1 83,766 - IAI47_19280 0.55 +1.1 83,766 - IAI47_19280 0.55 +1.1 83,766 - IAI47_19280 0.55 -0.4 83,766 - IAI47_19280 0.55 -0.9 83,766 - IAI47_19280 0.55 -0.2 83,766 - IAI47_19280 0.55 -1.5 83,766 - IAI47_19280 0.55 +0.1 83,766 - IAI47_19280 0.55 -0.5 83,767 + IAI47_19280 0.55 -0.5 83,767 + IAI47_19280 0.55 +0.5 83,767 + IAI47_19280 0.55 -1.4 83,767 + IAI47_19280 0.55 -0.9 83,768 - IAI47_19280 0.55 -0.5 83,768 - IAI47_19280 0.55 +0.1 83,768 - IAI47_19280 0.55 -0.4 83,768 - IAI47_19280 0.55 -0.1 83,768 - IAI47_19280 0.55 +0.3 83,768 - IAI47_19280 0.55 +0.1 83,768 - IAI47_19280 0.55 +2.4 83,768 - IAI47_19280 0.55 -0.8 83,768 - IAI47_19280 0.55 +0.1 83,790 + IAI47_19280 0.57 -0.1 83,851 + IAI47_19280 0.62 +0.5 83,852 - IAI47_19280 0.62 +0.3 83,852 - IAI47_19280 0.62 -0.9 83,935 - IAI47_19280 0.68 -0.7 83,935 - IAI47_19280 0.68 +2.1 83,960 + IAI47_19280 0.70 +1.4 83,960 + IAI47_19280 0.70 -0.3
Or see this region's nucleotide sequence