Strain Fitness in Pantoea sp. MT58 around IAI47_18015

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
3,830,139	+		IAI47_18010	0.55	-0.2
3,830,139	+		IAI47_18010	0.55	-0.9
3,830,140	-		IAI47_18010	0.55	-1.0
3,830,228	+		IAI47_18010	0.60	-0.5
3,830,228	+		IAI47_18010	0.60	-0.1
3,830,228	+		IAI47_18010	0.60	-0.5
3,830,228	+		IAI47_18010	0.60	-0.1
3,830,228	+		IAI47_18010	0.60	-0.8
3,830,228	+		IAI47_18010	0.60	-0.8
3,830,228	+		IAI47_18010	0.60	-0.4
3,830,228	+		IAI47_18010	0.60	+0.2
3,830,228	+		IAI47_18010	0.60	-0.8
3,830,229	-		IAI47_18010	0.61	-0.8
3,830,229	-		IAI47_18010	0.61	-0.0
3,830,229	-		IAI47_18010	0.61	+0.5
3,830,229	-		IAI47_18010	0.61	-0.6
3,830,229	-		IAI47_18010	0.61	-0.8
3,830,229	-		IAI47_18010	0.61	-0.1
3,830,234	+		IAI47_18010	0.61	-0.9
3,830,234	+		IAI47_18010	0.61	+0.2
3,830,234	+		IAI47_18010	0.61	-0.3
3,830,235	-		IAI47_18010	0.61	-0.4
3,830,235	-		IAI47_18010	0.61	-1.3
3,830,235	-		IAI47_18010	0.61	-1.0
3,830,235	-		IAI47_18010	0.61	-0.0
3,830,235	-		IAI47_18010	0.61	+1.0
3,830,235	-		IAI47_18010	0.61	-1.6
3,830,235	-		IAI47_18010	0.61	-0.4
3,830,235	-		IAI47_18010	0.61	-0.4
3,830,257	+		IAI47_18010	0.62	+0.0
3,830,282	+		IAI47_18010	0.64	+0.2
3,830,282	+		IAI47_18010	0.64	-1.2
3,830,403	-		IAI47_18010	0.71	-0.9
3,830,426	+		IAI47_18010	0.73	-0.4
3,830,426	+		IAI47_18010	0.73	+0.5
3,830,426	+		IAI47_18010	0.73	+0.5
3,830,426	+		IAI47_18010	0.73	+0.6
3,830,427	-		IAI47_18010	0.73	+0.7
3,830,427	-		IAI47_18010	0.73	-1.0
3,830,427	-		IAI47_18010	0.73	-0.5
3,830,530	+		IAI47_18010	0.79	-0.2
3,830,531	-		IAI47_18010	0.79	-0.2
3,830,531	-		IAI47_18010	0.79	-0.0
3,830,550	+		IAI47_18010	0.81	+1.3
3,830,551	-		IAI47_18010	0.81	-0.1
3,830,551	-		IAI47_18010	0.81	+0.5
3,830,602	+		IAI47_18010	0.84	-0.8
3,830,602	+		IAI47_18010	0.84	-0.9
3,830,602	+		IAI47_18010	0.84	-0.4
3,830,602	+		IAI47_18010	0.84	+0.6
3,830,602	+		IAI47_18010	0.84	+1.2
3,830,603	-		IAI47_18010	0.84	-1.1
3,830,603	-		IAI47_18010	0.84	-0.8
3,830,625	+		IAI47_18010	0.85	-2.4
3,830,626	-		IAI47_18010	0.85	-0.3
3,830,644	+		IAI47_18010	0.86	-2.1
3,830,644	+		IAI47_18010	0.86	-0.8
3,830,645	-		IAI47_18010	0.87	+1.2
3,830,645	-		IAI47_18010	0.87	-0.9
3,830,679	-		IAI47_18010	0.89	-1.4
3,830,679	-		IAI47_18010	0.89	-0.8
3,830,690	+		IAI47_18010	0.89	+0.5
3,830,690	+		IAI47_18010	0.89	-0.0
3,830,690	+		IAI47_18010	0.89	+0.2
3,830,691	-		IAI47_18010	0.89	-0.3
3,830,812	-				-0.8
3,830,812	-				-3.1
3,830,875	+				-0.4
3,830,875	+				-0.8
3,830,876	-				-0.9
3,830,940	+				+0.0
3,830,940	+				-0.8
3,830,940	+				+0.6
3,830,940	+				-0.6
3,830,941	-				-0.4
3,830,941	-				-0.2
3,830,941	-				-1.1
3,830,969	-				-0.2
3,830,982	+				-0.6
3,830,983	-				+0.2
3,830,996	+				-0.4
3,831,009	+				-0.5
3,831,027	+				-0.3
3,831,032	-				-1.6
3,831,034	+				-1.1
3,831,035	-				-1.4
3,831,123	+				-0.1
3,831,177	+				-2.9
3,831,177	+				-2.1
3,831,177	+				-0.8
3,831,178	-				-2.1
3,831,178	-				-2.1
3,831,180	+				-3.4
3,831,180	+				-1.8
3,831,180	+				-1.8
3,831,181	-				-2.4
3,831,208	+				-5.4
3,831,218	-		IAI47_18015	0.10	-1.4
3,831,218	-		IAI47_18015	0.10	-2.8
3,831,264	+		IAI47_18015	0.15	-3.6
3,831,264	+		IAI47_18015	0.15	-2.9
3,831,265	-		IAI47_18015	0.15	-3.1
3,831,265	-		IAI47_18015	0.15	-3.1
3,831,265	-		IAI47_18015	0.15	+0.2
3,831,265	-		IAI47_18015	0.15	-2.4
3,831,268	+		IAI47_18015	0.16	-2.8
3,831,268	+		IAI47_18015	0.16	-2.4
3,831,268	+		IAI47_18015	0.16	-3.6
3,831,268	+		IAI47_18015	0.16	-1.8
3,831,269	-		IAI47_18015	0.16	-1.4
3,831,269	-		IAI47_18015	0.16	-4.0
3,831,269	-		IAI47_18015	0.16	-2.1
3,831,269	-		IAI47_18015	0.16	-2.4
3,831,269	-		IAI47_18015	0.16	-2.4
3,831,269	-		IAI47_18015	0.16	-3.5
3,831,270	+		IAI47_18015	0.16	-3.8
3,831,270	+		IAI47_18015	0.16	-2.6
3,831,270	+		IAI47_18015	0.16	-3.1
3,831,270	+		IAI47_18015	0.16	-2.4
3,831,270	+		IAI47_18015	0.16	+0.2
3,831,271	-		IAI47_18015	0.16	-3.7
3,831,271	-		IAI47_18015	0.16	-2.9
3,831,271	-		IAI47_18015	0.16	-3.2
3,831,300	+		IAI47_18015	0.19	-3.2
3,831,300	+		IAI47_18015	0.19	-2.1
3,831,312	+		IAI47_18015	0.20	+0.2
3,831,312	+		IAI47_18015	0.20	-2.1
3,831,313	-		IAI47_18015	0.21	-1.8
3,831,313	-		IAI47_18015	0.21	-3.2
3,831,313	-		IAI47_18015	0.21	-0.8
3,831,313	-		IAI47_18015	0.21	-3.7
3,831,313	-		IAI47_18015	0.21	-4.2
3,831,313	-		IAI47_18015	0.21	-3.5
3,831,340	-		IAI47_18015	0.23	-3.6
3,831,340	-		IAI47_18015	0.23	-1.8
3,831,340	-		IAI47_18015	0.23	-4.0
3,831,355	+		IAI47_18015	0.25	-3.7
3,831,362	+		IAI47_18015	0.26	-1.6
3,831,362	+		IAI47_18015	0.26	-0.8
3,831,362	+		IAI47_18015	0.26	-2.6
3,831,362	+		IAI47_18015	0.26	+0.2
3,831,362	+		IAI47_18015	0.26	-2.9
3,831,363	-		IAI47_18015	0.26	-2.1
3,831,363	-		IAI47_18015	0.26	-2.1
3,831,363	-		IAI47_18015	0.26	-2.1
3,831,379	+		IAI47_18015	0.28	-2.8
3,831,393	+		IAI47_18015	0.29	-2.9
3,831,393	+		IAI47_18015	0.29	-2.4
3,831,394	-		IAI47_18015	0.29	-2.6
3,831,438	+		IAI47_18015	0.34	-2.4
3,831,438	+		IAI47_18015	0.34	-3.8
3,831,439	-		IAI47_18015	0.34	+0.2
3,831,458	-		IAI47_18015	0.36	-2.4
3,831,471	+		IAI47_18015	0.38	-3.9
3,831,471	+		IAI47_18015	0.38	-2.1
3,831,471	+		IAI47_18015	0.38	-2.1
3,831,472	-		IAI47_18015	0.38	-2.8
3,831,496	+		IAI47_18015	0.40	-2.6
3,831,497	-		IAI47_18015	0.40	-3.4
3,831,497	-		IAI47_18015	0.40	-3.1
3,831,536	+		IAI47_18015	0.45	-2.4
3,831,536	+		IAI47_18015	0.45	-2.8
3,831,536	+		IAI47_18015	0.45	-2.4
3,831,537	-		IAI47_18015	0.45	+0.2
3,831,537	-		IAI47_18015	0.45	-3.1
3,831,537	-		IAI47_18015	0.45	-1.4
3,831,537	-		IAI47_18015	0.45	-3.6
3,831,537	-		IAI47_18015	0.45	-1.8
3,831,549	+		IAI47_18015	0.46	-4.2
3,831,549	+		IAI47_18015	0.46	-3.5
3,831,549	+		IAI47_18015	0.46	-4.1
3,831,550	-		IAI47_18015	0.46	-2.1
3,831,568	+		IAI47_18015	0.48	-0.8
3,831,568	+		IAI47_18015	0.48	-3.5
3,831,568	+		IAI47_18015	0.48	-1.4
3,831,568	+		IAI47_18015	0.48	-4.3
3,831,569	-		IAI47_18015	0.48	-2.9
3,831,569	-		IAI47_18015	0.48	-3.4
3,831,569	-		IAI47_18015	0.48	-2.1
3,831,569	-		IAI47_18015	0.48	-1.8
3,831,594	+		IAI47_18015	0.51	-4.5
3,831,601	+		IAI47_18015	0.52	-3.6
3,831,601	+		IAI47_18015	0.52	+0.2
3,831,604	+		IAI47_18015	0.52	-0.8
3,831,693	+		IAI47_18015	0.61	-2.6
3,831,706	+		IAI47_18015	0.63	-2.6
3,831,744	-		IAI47_18015	0.67	-1.8
3,831,744	-		IAI47_18015	0.67	-2.1
3,831,744	-		IAI47_18015	0.67	-1.8
3,831,753	+		IAI47_18015	0.68	-2.1
3,831,753	+		IAI47_18015	0.68	-3.5
3,831,753	+		IAI47_18015	0.68	-1.4
3,831,753	+		IAI47_18015	0.68	-3.4
3,831,753	+		IAI47_18015	0.68	-1.8
3,831,753	+		IAI47_18015	0.68	-1.4
3,831,753	+		IAI47_18015	0.68	-2.6
3,831,753	+		IAI47_18015	0.68	-2.9
3,831,754	-		IAI47_18015	0.68	-2.1
3,831,769	+		IAI47_18015	0.70	-3.2
3,831,769	+		IAI47_18015	0.70	-1.8
3,831,770	-		IAI47_18015	0.70	-4.5
3,831,770	-		IAI47_18015	0.70	-3.7
3,831,786	+		IAI47_18015	0.71	-3.2
3,831,786	+		IAI47_18015	0.71	-3.1
3,831,787	-		IAI47_18015	0.72	-1.8
3,831,787	-		IAI47_18015	0.72	-2.8
3,831,814	+		IAI47_18015	0.74	-2.4
3,831,815	-		IAI47_18015	0.75	+0.2
3,831,815	-		IAI47_18015	0.75	-2.6
3,831,853	+		IAI47_18015	0.79	-2.6
3,831,853	+		IAI47_18015	0.79	-5.9
3,831,864	-		IAI47_18015	0.80	-2.9
3,831,932	+		IAI47_18015	0.87	-2.4
3,831,943	+		IAI47_18015	0.88	-3.6
3,831,943	+		IAI47_18015	0.88	-5.3
3,832,026	-				-1.8
3,832,051	+				-1.8
3,832,051	+				-3.9
3,832,052	-				-2.8
3,832,052	-				-2.9
3,832,075	+				-3.2
3,832,076	-				-1.0
3,832,076	-				-0.4
3,832,078	-				+0.6
3,832,078	-				-1.8
3,832,085	+				-2.1
3,832,086	-				+1.8
3,832,086	-				+1.2
3,832,164	+				+0.8
3,832,164	+				+0.4
3,832,174	+				+0.4
3,832,174	+				-0.5
3,832,174	+				-0.5
3,832,174	+				+0.2
3,832,174	+				-0.2
3,832,174	+				+1.6
3,832,174	+				+1.1
3,832,174	+				+0.5
3,832,174	+				+1.2
3,832,174	+				+1.2
3,832,174	+				-0.1
3,832,174	+				-0.5
3,832,174	+				+0.4
3,832,175	-				+2.6
3,832,175	-				-0.9
3,832,175	-				-0.9
3,832,175	-				-0.5
3,832,175	-				-0.5
3,832,175	-				-1.8
3,832,175	-				+1.1
3,832,175	-				-1.5
3,832,177	+				-0.4
3,832,177	+				+1.1
3,832,177	+				+0.2
3,832,177	+				+0.5
3,832,177	+				+0.2
3,832,177	+				+1.9
3,832,177	+				-2.6
3,832,177	+				-0.9
3,832,177	+				+1.2
3,832,177	+				+0.2
3,832,177	+				-0.5
3,832,177	+				-0.1
3,832,177	+				+1.5
3,832,177	+				+1.0
3,832,177	+				-0.8
3,832,178	-				+0.8
3,832,178	-				+0.2
3,832,178	-				-0.3
3,832,178	-				+1.4
3,832,178	-				+1.5
3,832,178	-				-1.8
3,832,178	-				-0.4
3,832,180	+				+2.6
3,832,180	+				+0.8
3,832,180	+				+0.2
3,832,181	-				+0.2
3,832,181	-				+0.2
3,832,181	-				-0.8
3,832,190	+				-1.0
3,832,190	+				-1.1
3,832,191	-				-0.8
3,832,191	-				+0.2
3,832,191	-				-0.2
3,832,191	-				+0.2
3,832,191	-				-0.4
3,832,207	-				+0.0
3,832,218	-				+0.8