Strain Fitness in Pantoea sp. MT58 around IAI47_17995

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
3,824,332	+		IAI47_17990	0.78	-1.1
3,824,332	+		IAI47_17990	0.78	+0.5
3,824,333	-		IAI47_17990	0.78	-0.8
3,824,333	-		IAI47_17990	0.78	-0.4
3,824,365	+		IAI47_17990	0.79	+0.1
3,824,365	+		IAI47_17990	0.79	+1.6
3,824,365	+		IAI47_17990	0.79	-0.4
3,824,365	+		IAI47_17990	0.79	-0.6
3,824,365	+		IAI47_17990	0.79	-0.0
3,824,365	+		IAI47_17990	0.79	-1.6
3,824,366	-		IAI47_17990	0.79	-0.6
3,824,366	-		IAI47_17990	0.79	+1.3
3,824,366	-		IAI47_17990	0.79	+0.2
3,824,366	-		IAI47_17990	0.79	-1.3
3,824,440	+		IAI47_17990	0.81	+0.2
3,824,441	-		IAI47_17990	0.81	-0.1
3,824,554	+		IAI47_17990	0.84	+2.2
3,824,554	+		IAI47_17990	0.84	-1.2
3,824,554	+		IAI47_17990	0.84	-0.2
3,824,554	+		IAI47_17990	0.84	+0.3
3,824,554	+		IAI47_17990	0.84	-0.6
3,824,554	+		IAI47_17990	0.84	-0.0
3,824,555	-		IAI47_17990	0.84	+0.6
3,824,555	-		IAI47_17990	0.84	-1.0
3,824,555	-		IAI47_17990	0.84	+0.2
3,824,555	-		IAI47_17990	0.84	+1.8
3,824,555	-		IAI47_17990	0.84	+1.9
3,824,555	-		IAI47_17990	0.84	+0.2
3,824,555	-		IAI47_17990	0.84	+0.2
3,824,555	-		IAI47_17990	0.84	+0.4
3,824,555	-		IAI47_17990	0.84	-0.5
3,824,555	-		IAI47_17990	0.84	+0.6
3,824,555	-		IAI47_17990	0.84	+0.2
3,824,555	-		IAI47_17990	0.84	+0.2
3,824,555	-		IAI47_17990	0.84	-0.5
3,824,555	-		IAI47_17990	0.84	-1.5
3,824,555	-		IAI47_17990	0.84	-0.9
3,824,555	-		IAI47_17990	0.84	-1.1
3,824,555	-		IAI47_17990	0.84	+2.2
3,824,555	-		IAI47_17990	0.84	-0.5
3,824,555	-		IAI47_17990	0.84	-0.5
3,824,555	-		IAI47_17990	0.84	+0.4
3,824,555	-		IAI47_17990	0.84	+0.8
3,824,579	+		IAI47_17990	0.85	-0.1
3,824,600	+		IAI47_17990	0.85	-0.8
3,824,600	+		IAI47_17990	0.85	-0.9
3,824,600	+		IAI47_17990	0.85	-0.2
3,824,600	+		IAI47_17990	0.85	-1.2
3,824,600	+		IAI47_17990	0.85	+0.2
3,824,600	+		IAI47_17990	0.85	-0.6
3,824,600	+		IAI47_17990	0.85	+0.0
3,824,600	+		IAI47_17990	0.85	+0.5
3,824,600	+		IAI47_17990	0.85	+0.2
3,824,600	+		IAI47_17990	0.85	+0.1
3,824,600	+		IAI47_17990	0.85	-0.6
3,824,601	-		IAI47_17990	0.86	+0.2
3,824,601	-		IAI47_17990	0.86	-0.4
3,824,601	-		IAI47_17990	0.86	-1.1
3,824,601	-		IAI47_17990	0.86	+0.2
3,824,601	-		IAI47_17990	0.86	+0.5
3,824,647	+		IAI47_17990	0.87	-0.6
3,824,647	+		IAI47_17990	0.87	+0.7
3,824,655	+		IAI47_17990	0.87	-0.0
3,824,666	+		IAI47_17990	0.87	+0.4
3,824,667	-		IAI47_17990	0.87	-0.3
3,824,752	+		IAI47_17990	0.90	+1.0
3,824,752	+		IAI47_17990	0.90	-1.4
3,824,753	-		IAI47_17990	0.90	+0.6
3,824,753	-		IAI47_17990	0.90	-0.4
3,824,821	+				+0.2
3,824,822	-				+0.6
3,824,822	-				-0.8
3,824,822	-				+0.2
3,824,822	-				+0.8
3,824,854	+				+0.2
3,824,889	-				-0.4
3,824,889	-				-0.9
3,824,889	-				-0.2
3,824,903	+				-2.9
3,824,904	-				-0.5
3,824,904	-				+0.0
3,824,923	+				+0.6
3,824,923	+				-1.2
3,824,924	-				+0.2
3,824,924	-				+0.7
3,824,924	-				+0.4
3,824,924	-				+0.9
3,824,924	-				+2.6
3,824,924	-				+0.2
3,824,957	+				-0.8
3,825,032	-				+0.6
3,825,087	-				+0.2
3,825,087	-				+0.1
3,825,087	-				+0.7
3,825,125	+				-1.1
3,825,125	+				+0.2
3,825,125	+				-0.8
3,825,126	-				-1.4
3,825,211	+				-2.4
3,825,211	+				+1.5
3,825,211	+				-0.8
3,825,211	+				-0.2
3,825,211	+				-0.5
3,825,212	-				-0.1
3,825,212	-				-1.4
3,825,212	-				+0.2
3,825,287	+				-0.9
3,825,349	+				-0.8
3,825,511	+		IAI47_17995	0.22	+0.0
3,825,512	-		IAI47_17995	0.22	-0.8
3,825,512	-		IAI47_17995	0.22	+0.2
3,825,512	-		IAI47_17995	0.22	+0.2
3,825,512	-		IAI47_17995	0.22	+0.8
3,825,631	+		IAI47_17995	0.36	+0.9
3,825,632	-		IAI47_17995	0.37	+0.2
3,825,722	+		IAI47_17995	0.47	+0.4
3,825,723	-		IAI47_17995	0.48	-1.4
3,825,723	-		IAI47_17995	0.48	+0.8
3,825,723	-		IAI47_17995	0.48	+1.0
3,825,723	-		IAI47_17995	0.48	-0.6
3,825,856	+		IAI47_17995	0.64	+0.2
3,825,857	-		IAI47_17995	0.64	-0.8
3,825,857	-		IAI47_17995	0.64	-2.1
3,825,857	-		IAI47_17995	0.64	-0.1
3,825,857	-		IAI47_17995	0.64	-0.4
3,825,857	-		IAI47_17995	0.64	-1.1
3,825,887	+		IAI47_17995	0.67	+0.1
3,825,887	+		IAI47_17995	0.67	+0.2
3,825,888	-		IAI47_17995	0.68	-1.4
3,825,888	-		IAI47_17995	0.68	-1.2
3,825,888	-		IAI47_17995	0.68	-0.4
3,825,890	+		IAI47_17995	0.68	+0.1
3,825,890	+		IAI47_17995	0.68	-0.7
3,825,890	+		IAI47_17995	0.68	-0.4
3,825,890	+		IAI47_17995	0.68	-0.1
3,825,890	+		IAI47_17995	0.68	-1.4
3,825,891	-		IAI47_17995	0.68	+0.8
3,825,891	-		IAI47_17995	0.68	+0.2
3,825,891	-		IAI47_17995	0.68	-0.1
3,825,949	+		IAI47_17995	0.75	-1.1
3,825,950	-		IAI47_17995	0.75	+3.0
3,826,016	+		IAI47_17995	0.83	+2.7
3,826,016	+		IAI47_17995	0.83	-0.4
3,826,016	+		IAI47_17995	0.83	-1.2
3,826,016	+		IAI47_17995	0.83	-0.4
3,826,016	+		IAI47_17995	0.83	+0.8
3,826,016	+		IAI47_17995	0.83	-0.4
3,826,016	+		IAI47_17995	0.83	-0.8
3,826,016	+		IAI47_17995	0.83	-0.8
3,826,016	+		IAI47_17995	0.83	+0.6
3,826,016	+		IAI47_17995	0.83	-0.6
3,826,016	+		IAI47_17995	0.83	+0.2
3,826,016	+		IAI47_17995	0.83	-0.4
3,826,017	-		IAI47_17995	0.83	-0.1
3,826,017	-		IAI47_17995	0.83	-2.1
3,826,017	-		IAI47_17995	0.83	-1.9
3,826,017	-		IAI47_17995	0.83	-1.1
3,826,017	-		IAI47_17995	0.83	+0.0
3,826,017	-		IAI47_17995	0.83	+1.0
3,826,099	-				-0.2
3,826,142	+				-0.1
3,826,169	+				-0.7
3,826,169	+				-0.6
3,826,169	+				-0.2
3,826,170	-				-1.2
3,826,171	+				-1.1
3,826,172	-				+0.0
3,826,172	-				-0.9
3,826,172	-				-1.0
3,826,172	-				+0.2
3,826,172	-				-1.4
3,826,272	+				-1.4
3,826,297	-				-1.9
3,826,297	-				-0.2
3,826,372	+		IAI47_18000	0.14	-1.6
3,826,372	+		IAI47_18000	0.14	-0.1
3,826,372	+		IAI47_18000	0.14	+0.5
3,826,373	-		IAI47_18000	0.14	+0.3
3,826,373	-		IAI47_18000	0.14	+1.0
3,826,373	-		IAI47_18000	0.14	+0.6
3,826,373	-		IAI47_18000	0.14	-1.4
3,826,405	+		IAI47_18000	0.16	-0.5
3,826,405	+		IAI47_18000	0.16	-1.2
3,826,406	-		IAI47_18000	0.16	-0.6
3,826,406	-		IAI47_18000	0.16	+0.2
3,826,406	-		IAI47_18000	0.16	+0.2
3,826,468	+		IAI47_18000	0.19	+0.4
3,826,469	-		IAI47_18000	0.19	-0.4
3,826,469	-		IAI47_18000	0.19	+1.8
3,826,473	+		IAI47_18000	0.20	-1.5
3,826,473	+		IAI47_18000	0.20	-0.5
3,826,473	+		IAI47_18000	0.20	-0.4
3,826,474	-		IAI47_18000	0.20	+0.6
3,826,495	-		IAI47_18000	0.21	-1.8
3,826,495	-		IAI47_18000	0.21	+1.2
3,826,509	-		IAI47_18000	0.22	-0.8
3,826,509	-		IAI47_18000	0.22	+0.5
3,826,517	+		IAI47_18000	0.22	-1.7
3,826,517	+		IAI47_18000	0.22	-1.0
3,826,518	-		IAI47_18000	0.22	+1.1
3,826,532	+		IAI47_18000	0.23	-0.8
3,826,567	+		IAI47_18000	0.25	+1.8
3,826,567	+		IAI47_18000	0.25	-0.8
3,826,568	-		IAI47_18000	0.25	+1.6
3,826,568	-		IAI47_18000	0.25	+0.6
3,826,568	-		IAI47_18000	0.25	+1.4
3,826,615	+		IAI47_18000	0.28	-1.1
3,826,615	+		IAI47_18000	0.28	+0.5
3,826,615	+		IAI47_18000	0.28	+0.2
3,826,616	-		IAI47_18000	0.28	+0.0
3,826,635	-		IAI47_18000	0.29	+0.9
3,826,635	-		IAI47_18000	0.29	-0.4
3,826,661	+		IAI47_18000	0.30	-1.2
3,826,662	-		IAI47_18000	0.30	-0.0
3,826,662	-		IAI47_18000	0.30	+1.0
3,826,662	-		IAI47_18000	0.30	+1.2
3,826,683	-		IAI47_18000	0.32	+0.1
3,826,683	-		IAI47_18000	0.32	-0.6
3,826,683	-		IAI47_18000	0.32	-0.5
3,826,684	+		IAI47_18000	0.32	+0.6
3,826,684	+		IAI47_18000	0.32	-0.4
3,826,684	+		IAI47_18000	0.32	-0.4
3,826,684	+		IAI47_18000	0.32	+0.0
3,826,684	+		IAI47_18000	0.32	-0.9
3,826,684	+		IAI47_18000	0.32	-0.1
3,826,684	+		IAI47_18000	0.32	-0.3
3,826,684	+		IAI47_18000	0.32	-0.5
3,826,684	+		IAI47_18000	0.32	-0.1
3,826,684	+		IAI47_18000	0.32	+0.2
3,826,684	+		IAI47_18000	0.32	-0.9
3,826,684	+		IAI47_18000	0.32	-0.5
3,826,684	+		IAI47_18000	0.32	-0.6
3,826,684	+		IAI47_18000	0.32	-1.6
3,826,684	+		IAI47_18000	0.32	-2.6
3,826,684	+		IAI47_18000	0.32	-0.2
3,826,684	+		IAI47_18000	0.32	-0.3
3,826,684	+		IAI47_18000	0.32	+1.2
3,826,685	-		IAI47_18000	0.32	+0.0
3,826,685	-		IAI47_18000	0.32	-0.4
3,826,685	-		IAI47_18000	0.32	-0.5
3,826,820	-		IAI47_18000	0.39	-0.3
3,826,820	-		IAI47_18000	0.39	-0.4
3,826,820	-		IAI47_18000	0.39	+0.5
3,826,820	-		IAI47_18000	0.39	+0.7
3,826,820	-		IAI47_18000	0.39	+1.0
3,826,887	+		IAI47_18000	0.43	-0.8
3,826,987	+		IAI47_18000	0.49	-0.0
3,826,988	-		IAI47_18000	0.49	-0.4
3,827,010	-		IAI47_18000	0.50	-1.8
3,827,036	+		IAI47_18000	0.52	-0.9
3,827,036	+		IAI47_18000	0.52	-1.4
3,827,036	+		IAI47_18000	0.52	+0.3
3,827,037	-		IAI47_18000	0.52	+0.8
3,827,037	-		IAI47_18000	0.52	-0.5
3,827,038	+		IAI47_18000	0.52	+0.5
3,827,038	+		IAI47_18000	0.52	-0.4
3,827,038	+		IAI47_18000	0.52	-0.6
3,827,038	+		IAI47_18000	0.52	+0.5
3,827,038	+		IAI47_18000	0.52	-2.1
3,827,038	+		IAI47_18000	0.52	+0.3
3,827,039	-		IAI47_18000	0.52	-0.1
3,827,039	-		IAI47_18000	0.52	-0.2
3,827,039	-		IAI47_18000	0.52	-0.8
3,827,039	-		IAI47_18000	0.52	-0.2
3,827,039	-		IAI47_18000	0.52	-0.0
3,827,039	-		IAI47_18000	0.52	+0.8
3,827,039	-		IAI47_18000	0.52	+0.9
3,827,039	-		IAI47_18000	0.52	+0.6
3,827,039	-		IAI47_18000	0.52	+0.0
3,827,039	-		IAI47_18000	0.52	-1.3
3,827,039	-		IAI47_18000	0.52	-0.1
3,827,039	-		IAI47_18000	0.52	-1.4
3,827,039	-		IAI47_18000	0.52	-1.4
3,827,039	-		IAI47_18000	0.52	-1.8
3,827,058	-		IAI47_18000	0.53	+0.2
3,827,101	-		IAI47_18000	0.55	+0.2
3,827,110	+		IAI47_18000	0.56	-0.1
3,827,110	+		IAI47_18000	0.56	+0.2
3,827,110	+		IAI47_18000	0.56	+0.3
3,827,110	+		IAI47_18000	0.56	-0.2
3,827,110	+		IAI47_18000	0.56	-0.8
3,827,110	+		IAI47_18000	0.56	-0.4
3,827,110	+		IAI47_18000	0.56	-1.6
3,827,110	+		IAI47_18000	0.56	+0.3
3,827,111	-		IAI47_18000	0.56	-1.1
3,827,111	-		IAI47_18000	0.56	+1.8
3,827,111	-		IAI47_18000	0.56	-0.2
3,827,111	-		IAI47_18000	0.56	-1.1
3,827,111	-		IAI47_18000	0.56	-1.4
3,827,111	-		IAI47_18000	0.56	-0.3
3,827,111	-		IAI47_18000	0.56	+0.2
3,827,111	-		IAI47_18000	0.56	-0.5
3,827,111	-		IAI47_18000	0.56	-1.4
3,827,111	-		IAI47_18000	0.56	+1.0
3,827,122	+		IAI47_18000	0.57	+0.0
3,827,123	-		IAI47_18000	0.57	+1.9
3,827,123	-		IAI47_18000	0.57	+0.3
3,827,123	-		IAI47_18000	0.57	+0.2
3,827,123	-		IAI47_18000	0.57	-0.9