Strain Fitness in Pantoea sp. MT58 around IAI47_16165

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
3,421,369	+				+1.7
3,421,370	-				+0.0
3,421,456	+		IAI47_16160	0.12	+0.2
3,421,456	+		IAI47_16160	0.12	-0.2
3,421,456	+		IAI47_16160	0.12	+0.2
3,421,456	+		IAI47_16160	0.12	-0.8
3,421,456	+		IAI47_16160	0.12	-0.2
3,421,456	+		IAI47_16160	0.12	+1.0
3,421,456	+		IAI47_16160	0.12	+0.7
3,421,456	+		IAI47_16160	0.12	+1.2
3,421,456	+		IAI47_16160	0.12	-0.8
3,421,456	+		IAI47_16160	0.12	+0.6
3,421,456	+		IAI47_16160	0.12	+0.2
3,421,456	+		IAI47_16160	0.12	+1.7
3,421,457	-		IAI47_16160	0.12	+0.5
3,421,457	-		IAI47_16160	0.12	-0.6
3,421,457	-		IAI47_16160	0.12	+0.8
3,421,457	-		IAI47_16160	0.12	-0.8
3,421,457	-		IAI47_16160	0.12	-0.1
3,421,457	-		IAI47_16160	0.12	+0.4
3,421,457	-		IAI47_16160	0.12	+0.2
3,421,457	-		IAI47_16160	0.12	+1.4
3,421,461	+		IAI47_16160	0.13	-0.9
3,421,461	+		IAI47_16160	0.13	+0.1
3,421,461	+		IAI47_16160	0.13	+0.4
3,421,461	+		IAI47_16160	0.13	+0.4
3,421,461	+		IAI47_16160	0.13	+2.0
3,421,462	-		IAI47_16160	0.13	-0.8
3,421,462	-		IAI47_16160	0.13	-0.2
3,421,462	-		IAI47_16160	0.13	-0.7
3,421,462	-		IAI47_16160	0.13	+1.8
3,421,477	+		IAI47_16160	0.14	+1.0
3,421,478	-		IAI47_16160	0.14	+0.1
3,421,478	-		IAI47_16160	0.14	+0.2
3,421,550	+		IAI47_16160	0.22	+1.1
3,421,550	+		IAI47_16160	0.22	+2.9
3,421,550	+		IAI47_16160	0.22	-0.5
3,421,550	+		IAI47_16160	0.22	+0.7
3,421,550	+		IAI47_16160	0.22	-0.8
3,421,551	-		IAI47_16160	0.22	+1.2
3,421,561	+		IAI47_16160	0.23	-0.1
3,421,562	-		IAI47_16160	0.24	+1.7
3,421,562	-		IAI47_16160	0.24	-1.0
3,421,562	-		IAI47_16160	0.24	+0.2
3,421,636	+		IAI47_16160	0.32	+0.2
3,421,637	-		IAI47_16160	0.32	+1.0
3,421,825	+		IAI47_16160	0.52	+0.7
3,421,825	+		IAI47_16160	0.52	+0.9
3,421,825	+		IAI47_16160	0.52	+0.7
3,421,825	+		IAI47_16160	0.52	+0.4
3,421,825	+		IAI47_16160	0.52	+1.2
3,421,825	+		IAI47_16160	0.52	-0.5
3,421,825	+		IAI47_16160	0.52	-1.5
3,421,825	+		IAI47_16160	0.52	+1.0
3,421,825	+		IAI47_16160	0.52	+0.7
3,421,826	-		IAI47_16160	0.52	-1.0
3,421,826	-		IAI47_16160	0.52	+0.5
3,421,826	-		IAI47_16160	0.52	-0.0
3,421,826	-		IAI47_16160	0.52	-0.2
3,421,826	-		IAI47_16160	0.52	+0.2
3,421,831	+		IAI47_16160	0.53	+1.8
3,421,831	+		IAI47_16160	0.53	+0.2
3,421,832	-		IAI47_16160	0.53	-0.2
3,421,832	-		IAI47_16160	0.53	+0.2
3,421,840	+		IAI47_16160	0.54	+0.2
3,421,840	+		IAI47_16160	0.54	+0.5
3,421,840	+		IAI47_16160	0.54	+0.0
3,421,840	+		IAI47_16160	0.54	+0.7
3,421,841	-		IAI47_16160	0.54	+1.2
3,421,841	-		IAI47_16160	0.54	+1.0
3,421,841	-		IAI47_16160	0.54	-0.3
3,421,841	-		IAI47_16160	0.54	-1.0
3,421,936	+		IAI47_16160	0.64	+0.4
3,421,936	+		IAI47_16160	0.64	+0.6
3,421,936	+		IAI47_16160	0.64	+1.6
3,421,936	+		IAI47_16160	0.64	+1.6
3,421,937	-		IAI47_16160	0.64	+0.6
3,421,951	+		IAI47_16160	0.66	-0.5
3,421,951	+		IAI47_16160	0.66	+0.1
3,422,004	+		IAI47_16160	0.72	+1.1
3,422,005	-		IAI47_16160	0.72	-2.1
3,422,005	-		IAI47_16160	0.72	+0.7
3,422,038	+		IAI47_16160	0.75	-0.3
3,422,038	+		IAI47_16160	0.75	+0.2
3,422,038	+		IAI47_16160	0.75	+1.0
3,422,039	-		IAI47_16160	0.75	+0.5
3,422,039	-		IAI47_16160	0.75	+0.7
3,422,039	-		IAI47_16160	0.75	+0.4
3,422,039	-		IAI47_16160	0.75	-0.3
3,422,039	-		IAI47_16160	0.75	+1.0
3,422,039	-		IAI47_16160	0.75	-0.3
3,422,039	-		IAI47_16160	0.75	+0.2
3,422,039	-		IAI47_16160	0.75	+1.2
3,422,146	+		IAI47_16160	0.87	+1.0
3,422,146	+		IAI47_16160	0.87	+0.2
3,422,146	+		IAI47_16160	0.87	+1.2
3,422,146	+		IAI47_16160	0.87	-0.3
3,422,146	+		IAI47_16160	0.87	-0.2
3,422,146	+		IAI47_16160	0.87	-0.5
3,422,147	-		IAI47_16160	0.87	-0.6
3,422,147	-		IAI47_16160	0.87	-0.5
3,422,183	+				+0.5
3,422,183	+				-1.9
3,422,183	+				-0.8
3,422,183	+				-1.3
3,422,184	-				+0.1
3,422,184	-				+0.8
3,422,232	+				-0.2
3,422,232	+				+0.2
3,422,232	+				+0.5
3,422,232	+				+0.7
3,422,233	-				-1.8
3,422,235	+				-1.1
3,422,235	+				+1.6
3,422,235	+				+1.5
3,422,322	-				+1.2
3,423,497	-				+0.4
3,423,513	+				+0.8
3,423,513	+				-0.8
3,423,544	+				+0.4
3,423,545	-				-0.5
3,423,545	-				-0.2
3,423,577	-				-1.0
3,423,600	+				+0.0
3,423,600	+				+0.8
3,423,600	+				+1.4
3,423,600	+				-1.1
3,423,601	-				+0.9
3,423,601	-				-0.9
3,423,601	-				-0.4
3,423,604	-				+0.0
3,423,604	-				-1.2
3,423,604	-				-1.0
3,423,604	-				+0.2
3,423,604	-				+0.7
3,423,615	+				+0.9
3,423,616	-				+0.6
3,423,616	-				-0.9
3,423,616	-				-0.3
3,423,616	-				-0.8
3,423,616	-				-0.6
3,423,617	+				-0.0
3,423,617	+				+1.6
3,423,617	+				+2.0
3,423,617	+				+1.0
3,423,617	+				+0.0
3,423,617	+				-0.2
3,423,617	+				+0.2
3,423,617	+				+0.2
3,423,617	+				-0.8
3,423,617	+				-0.8
3,423,618	-				+0.4
3,423,618	-				+1.2
3,423,618	-				-1.2
3,423,618	-				-0.2
3,423,618	-				-0.6
3,423,618	-				-0.8
3,423,666	+				+0.4
3,423,666	+				+0.2
3,423,667	-				+0.7
3,423,673	+				-0.1
3,423,674	-				-0.8
3,423,723	-				+1.7
3,423,723	-				+1.2
3,423,723	-				+1.0
3,423,738	-				+0.2
3,423,738	-				-0.1
3,423,738	-				-0.5
3,423,738	-				+1.0