Strain Fitness in Pantoea sp. MT58 around IAI47_15990

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
3,375,049	+		IAI47_15980	0.76	-1.3
3,375,049	+		IAI47_15980	0.76	-2.3
3,375,050	-		IAI47_15980	0.76	-0.3
3,375,050	-		IAI47_15980	0.76	+0.8
3,375,050	-		IAI47_15980	0.76	-1.1
3,375,050	-		IAI47_15980	0.76	-2.3
3,375,050	-		IAI47_15980	0.76	-1.3
3,375,059	+		IAI47_15980	0.77	-1.8
3,375,065	+		IAI47_15980	0.77	-1.8
3,375,065	+		IAI47_15980	0.77	-2.5
3,375,065	+		IAI47_15980	0.77	-2.1
3,375,065	+		IAI47_15980	0.77	-1.3
3,375,066	-		IAI47_15980	0.77	-2.8
3,375,066	-		IAI47_15980	0.77	-2.8
3,375,067	+		IAI47_15980	0.78	-1.3
3,375,067	+		IAI47_15980	0.78	-1.8
3,375,067	+		IAI47_15980	0.78	-2.1
3,375,067	+		IAI47_15980	0.78	-0.8
3,375,068	-		IAI47_15980	0.78	-0.8
3,375,096	+		IAI47_15980	0.80	-1.6
3,375,146	+		IAI47_15980	0.85	-0.2
3,375,147	-		IAI47_15980	0.85	-1.3
3,375,154	+		IAI47_15980	0.86	-1.3
3,375,154	+		IAI47_15980	0.86	-1.2
3,375,154	+		IAI47_15980	0.86	-2.6
3,375,154	+		IAI47_15980	0.86	-1.1
3,375,154	+		IAI47_15980	0.86	-0.8
3,375,154	+		IAI47_15980	0.86	-1.3
3,375,154	+		IAI47_15980	0.86	-2.8
3,375,154	+		IAI47_15980	0.86	-2.3
3,375,155	-		IAI47_15980	0.86	-1.3
3,375,155	-		IAI47_15980	0.86	-1.3
3,375,155	-		IAI47_15980	0.86	-1.3
3,375,155	-		IAI47_15980	0.86	-0.8
3,375,155	-		IAI47_15980	0.86	-2.5
3,375,155	-		IAI47_15980	0.86	-2.9
3,375,158	+		IAI47_15980	0.87	-1.3
3,375,158	+		IAI47_15980	0.87	-2.6
3,375,158	+		IAI47_15980	0.87	-1.9
3,375,158	+		IAI47_15980	0.87	-2.8
3,375,159	-		IAI47_15980	0.87	-1.6
3,375,159	-		IAI47_15980	0.87	-0.3
3,375,159	-		IAI47_15980	0.87	-1.6
3,375,159	-		IAI47_15980	0.87	-0.8
3,375,159	-		IAI47_15980	0.87	-2.1
3,375,159	-		IAI47_15980	0.87	-0.5
3,375,159	-		IAI47_15980	0.87	-1.3
3,375,159	-		IAI47_15980	0.87	-0.1
3,375,159	-		IAI47_15980	0.87	+0.2
3,375,168	+		IAI47_15980	0.88	-0.8
3,375,169	-		IAI47_15980	0.88	-1.1
3,375,212	-				-1.1
3,375,331	+				-1.3
3,375,341	+				-0.1
3,375,341	+				-1.6
3,375,342	-				-0.9
3,375,342	-				-0.8
3,375,342	-				-2.1
3,375,342	-				-0.8
3,375,342	-				-0.8
3,375,346	+				-1.8
3,375,346	+				+0.2
3,375,346	+				-0.8
3,375,347	-				-0.5
3,375,347	-				-0.5
3,375,347	-				-0.3
3,375,347	-				-0.2
3,375,353	-				-1.2
3,375,353	-				-0.6
3,375,353	-				+0.4
3,375,353	-				-0.3
3,375,363	+				-2.4
3,375,363	+				-2.9
3,375,364	-				-0.1
3,375,364	-				-0.8
3,375,364	-				+0.8
3,375,364	-				-0.8
3,375,364	-				+0.8
3,375,364	-				-0.1
3,375,364	-				+0.4
3,375,370	+				-0.8
3,375,370	+				-0.3
3,375,370	+				+0.2
3,375,370	+				-0.2
3,375,370	+				-1.3
3,375,371	-				-0.3
3,375,411	+				+1.8
3,375,411	+				-0.6
3,375,411	+				-1.5
3,375,412	-				+0.1
3,375,412	-				+0.2
3,375,460	+				+0.2
3,375,491	+				-0.3
3,375,624	-		IAI47_15985	0.27	+0.2
3,375,637	+		IAI47_15985	0.30	-1.6
3,375,637	+		IAI47_15985	0.30	-2.0
3,375,638	-		IAI47_15985	0.30	-0.8
3,375,638	-		IAI47_15985	0.30	-4.2
3,375,638	-		IAI47_15985	0.30	-1.5
3,375,695	+		IAI47_15985	0.42	-1.6
3,375,695	+		IAI47_15985	0.42	-1.5
3,375,696	-		IAI47_15985	0.42	-2.9
3,375,740	+		IAI47_15985	0.51	-0.8
3,375,740	+		IAI47_15985	0.51	-0.3
3,375,740	+		IAI47_15985	0.51	-0.5
3,375,741	-		IAI47_15985	0.51	-0.5
3,375,741	-		IAI47_15985	0.51	-1.3
3,375,814	+		IAI47_15985	0.66	+0.8
3,375,814	+		IAI47_15985	0.66	-1.3
3,375,815	-		IAI47_15985	0.66	-0.8
3,375,815	-		IAI47_15985	0.66	-2.0
3,375,897	+		IAI47_15985	0.83	-1.0
3,375,897	+		IAI47_15985	0.83	-2.1
3,375,898	-		IAI47_15985	0.83	-0.8
3,375,898	-		IAI47_15985	0.83	+0.7
3,375,898	-		IAI47_15985	0.83	-1.6
3,375,898	-		IAI47_15985	0.83	-1.1
3,375,898	-		IAI47_15985	0.83	-1.8
3,375,899	+		IAI47_15985	0.83	-0.8
3,375,899	+		IAI47_15985	0.83	-1.3
3,375,900	-		IAI47_15985	0.83	+0.8
3,375,935	-				+0.7
3,375,967	+				+1.5
3,375,968	-				-2.5
3,375,972	+				-1.4
3,375,972	+				-2.3
3,375,973	-				-1.2
3,375,981	+				-1.8
3,375,981	+				-0.8
3,375,981	+				-2.1
3,375,981	+				-1.6
3,375,981	+				-2.1
3,375,981	+				-1.6
3,375,981	+				-1.8
3,375,981	+				-1.6
3,375,981	+				-1.8
3,375,981	+				-1.6
3,375,981	+				-1.6
3,375,982	-				-0.2
3,375,982	-				-2.3
3,375,982	-				-0.8
3,375,982	-				-1.6
3,375,982	-				-1.8
3,375,982	-				-2.2
3,375,982	-				-0.3
3,375,985	+				-2.6
3,375,985	+				-1.8
3,375,985	+				-1.0
3,375,985	+				-1.9
3,375,985	+				-2.9
3,375,985	+				-2.2
3,375,985	+				-0.8
3,375,986	-				-1.3
3,375,986	-				-1.0
3,375,986	-				+0.2
3,375,986	-				-0.6
3,375,986	-				-2.6
3,375,986	-				-1.1
3,375,986	-				-1.8
3,375,986	-				-0.3
3,375,986	-				-0.6
3,376,048	+				-1.2
3,376,048	+				-2.6
3,376,048	+				-2.1
3,376,177	+		IAI47_15990	0.11	+0.2
3,376,177	+		IAI47_15990	0.11	-1.9
3,376,178	-		IAI47_15990	0.11	-1.1
3,376,178	-		IAI47_15990	0.11	-0.8
3,376,178	-		IAI47_15990	0.11	-2.3
3,376,178	-		IAI47_15990	0.11	-2.6
3,376,178	-		IAI47_15990	0.11	-1.8
3,376,217	+		IAI47_15990	0.14	-1.9
3,376,217	+		IAI47_15990	0.14	-0.3
3,376,217	+		IAI47_15990	0.14	-2.5
3,376,217	+		IAI47_15990	0.14	+0.0
3,376,218	-		IAI47_15990	0.14	-1.6
3,376,218	-		IAI47_15990	0.14	-1.3
3,376,218	-		IAI47_15990	0.14	-1.3
3,376,218	-		IAI47_15990	0.14	-1.2
3,376,218	-		IAI47_15990	0.14	-2.3
3,376,219	+		IAI47_15990	0.14	-2.0
3,376,219	+		IAI47_15990	0.14	-1.6
3,376,219	+		IAI47_15990	0.14	-0.8
3,376,219	+		IAI47_15990	0.14	-1.6
3,376,219	+		IAI47_15990	0.14	-0.8
3,376,219	+		IAI47_15990	0.14	-2.1
3,376,219	+		IAI47_15990	0.14	-2.3
3,376,219	+		IAI47_15990	0.14	-2.6
3,376,219	+		IAI47_15990	0.14	-0.5
3,376,219	+		IAI47_15990	0.14	-0.8
3,376,220	-		IAI47_15990	0.14	-1.3
3,376,220	-		IAI47_15990	0.14	-1.2
3,376,220	-		IAI47_15990	0.14	-0.8
3,376,220	-		IAI47_15990	0.14	-1.6
3,376,220	-		IAI47_15990	0.14	+0.2
3,376,220	-		IAI47_15990	0.14	-1.3
3,376,220	-		IAI47_15990	0.14	+2.0
3,376,220	-		IAI47_15990	0.14	-1.8
3,376,250	+		IAI47_15990	0.15	-1.1
3,376,250	+		IAI47_15990	0.15	-1.6
3,376,251	-		IAI47_15990	0.15	-1.3
3,376,251	-		IAI47_15990	0.15	-1.7
3,376,251	-		IAI47_15990	0.15	-2.1
3,376,286	+		IAI47_15990	0.18	+0.8
3,376,300	-		IAI47_15990	0.18	-0.2
3,376,318	+		IAI47_15990	0.19	-0.8
3,376,318	+		IAI47_15990	0.19	-0.3
3,376,318	+		IAI47_15990	0.19	+0.2
3,376,318	+		IAI47_15990	0.19	-1.5
3,376,346	+		IAI47_15990	0.21	-0.8
3,376,346	+		IAI47_15990	0.21	-1.8
3,376,347	-		IAI47_15990	0.21	-2.6
3,376,347	-		IAI47_15990	0.21	-2.1
3,376,347	-		IAI47_15990	0.21	-0.8
3,376,481	+		IAI47_15990	0.29	-1.0
3,376,492	+		IAI47_15990	0.29	-0.8
3,376,493	-		IAI47_15990	0.30	-2.0
3,376,495	+		IAI47_15990	0.30	-2.3
3,376,495	+		IAI47_15990	0.30	-2.8
3,376,495	+		IAI47_15990	0.30	-1.7
3,376,495	+		IAI47_15990	0.30	-0.1
3,376,495	+		IAI47_15990	0.30	-1.2
3,376,496	-		IAI47_15990	0.30	-1.0
3,376,496	-		IAI47_15990	0.30	-1.5
3,376,496	-		IAI47_15990	0.30	-0.3
3,376,496	-		IAI47_15990	0.30	-1.3
3,376,496	-		IAI47_15990	0.30	+1.0
3,376,496	-		IAI47_15990	0.30	+0.2
3,376,524	+		IAI47_15990	0.31	-1.8
3,376,525	-		IAI47_15990	0.31	-1.1
3,376,525	-		IAI47_15990	0.31	-2.9
3,376,525	-		IAI47_15990	0.31	-0.6
3,376,525	-		IAI47_15990	0.31	-1.9
3,376,525	-		IAI47_15990	0.31	-1.3
3,376,525	-		IAI47_15990	0.31	-0.9
3,376,540	+		IAI47_15990	0.32	-1.0
3,376,540	+		IAI47_15990	0.32	-0.8
3,376,540	+		IAI47_15990	0.32	-1.5
3,376,540	+		IAI47_15990	0.32	-1.8
3,376,540	+		IAI47_15990	0.32	+0.2
3,376,540	+		IAI47_15990	0.32	-1.5
3,376,540	+		IAI47_15990	0.32	-1.3
3,376,540	+		IAI47_15990	0.32	+0.2
3,376,541	-		IAI47_15990	0.32	-2.1
3,376,541	-		IAI47_15990	0.32	-0.8
3,376,541	-		IAI47_15990	0.32	-1.3
3,376,541	-		IAI47_15990	0.32	-1.1
3,376,541	-		IAI47_15990	0.32	-0.5
3,376,541	-		IAI47_15990	0.32	-1.3
3,376,541	-		IAI47_15990	0.32	-3.1
3,376,541	-		IAI47_15990	0.32	-1.9
3,376,541	-		IAI47_15990	0.32	-1.1
3,376,592	+		IAI47_15990	0.35	-1.7
3,376,592	+		IAI47_15990	0.35	-1.2
3,376,592	+		IAI47_15990	0.35	-2.8
3,376,592	+		IAI47_15990	0.35	-0.8
3,376,593	-		IAI47_15990	0.35	-0.5
3,376,707	+		IAI47_15990	0.42	-1.1
3,376,781	+		IAI47_15990	0.46	+0.2
3,376,781	+		IAI47_15990	0.46	-2.2
3,376,782	-		IAI47_15990	0.46	-0.1
3,376,782	-		IAI47_15990	0.46	-2.0
3,376,828	+		IAI47_15990	0.49	-1.1
3,376,829	-		IAI47_15990	0.49	-0.5
3,376,907	+		IAI47_15990	0.54	-2.1
3,376,907	+		IAI47_15990	0.54	-1.3
3,376,907	+		IAI47_15990	0.54	-1.6
3,376,907	+		IAI47_15990	0.54	+1.5
3,376,907	+		IAI47_15990	0.54	+0.2
3,376,907	+		IAI47_15990	0.54	-1.3
3,376,907	+		IAI47_15990	0.54	-0.5
3,376,908	-		IAI47_15990	0.54	-0.8
3,376,908	-		IAI47_15990	0.54	-1.7
3,376,908	-		IAI47_15990	0.54	-0.4
3,376,908	-		IAI47_15990	0.54	-2.0
3,376,910	+		IAI47_15990	0.54	-1.1
3,376,910	+		IAI47_15990	0.54	-1.2
3,376,910	+		IAI47_15990	0.54	-1.2
3,376,910	+		IAI47_15990	0.54	-1.3
3,376,910	+		IAI47_15990	0.54	-1.2
3,376,911	-		IAI47_15990	0.54	-0.8
3,376,911	-		IAI47_15990	0.54	-0.3
3,376,911	-		IAI47_15990	0.54	-2.1
3,376,911	-		IAI47_15990	0.54	-1.8
3,376,911	-		IAI47_15990	0.54	-1.8
3,376,911	-		IAI47_15990	0.54	-0.5
3,376,911	-		IAI47_15990	0.54	-1.8
3,376,911	-		IAI47_15990	0.54	-1.2
3,376,911	-		IAI47_15990	0.54	-1.6
3,376,911	-		IAI47_15990	0.54	-0.3
3,376,911	-		IAI47_15990	0.54	-1.1
3,376,911	-		IAI47_15990	0.54	-1.1
3,376,911	-		IAI47_15990	0.54	-1.3
3,376,911	-		IAI47_15990	0.54	-2.2
3,376,911	-		IAI47_15990	0.54	-1.5
3,376,918	+		IAI47_15990	0.54	-0.5
3,376,918	+		IAI47_15990	0.54	-0.8
3,376,918	+		IAI47_15990	0.54	-1.0
3,376,918	+		IAI47_15990	0.54	-1.2
3,376,918	+		IAI47_15990	0.54	-4.2
3,376,918	+		IAI47_15990	0.54	-1.2
3,376,918	+		IAI47_15990	0.54	-2.2
3,376,918	+		IAI47_15990	0.54	-0.9
3,376,918	+		IAI47_15990	0.54	-1.0
3,376,918	+		IAI47_15990	0.54	+1.8
3,376,919	-		IAI47_15990	0.54	-1.1
3,376,919	-		IAI47_15990	0.54	+0.2
3,376,919	-		IAI47_15990	0.54	-0.8
3,376,919	-		IAI47_15990	0.54	-0.0
3,376,919	-		IAI47_15990	0.54	+0.2
3,376,919	-		IAI47_15990	0.54	-3.3
3,376,919	-		IAI47_15990	0.54	-2.0
3,376,919	-		IAI47_15990	0.54	-1.8
3,376,919	-		IAI47_15990	0.54	-1.3
3,377,006	+		IAI47_15990	0.59	-1.3
3,377,028	+		IAI47_15990	0.61	-1.1
3,377,028	+		IAI47_15990	0.61	-3.0
3,377,029	-		IAI47_15990	0.61	-2.9
3,377,029	-		IAI47_15990	0.61	+0.8
3,377,029	-		IAI47_15990	0.61	-0.5
3,377,055	-		IAI47_15990	0.62	-1.1
3,377,074	+		IAI47_15990	0.63	-0.8
3,377,074	+		IAI47_15990	0.63	-1.3
3,377,074	+		IAI47_15990	0.63	-0.6
3,377,075	-		IAI47_15990	0.63	-0.8
3,377,075	-		IAI47_15990	0.63	-1.1
3,377,075	-		IAI47_15990	0.63	-2.9
3,377,075	-		IAI47_15990	0.63	-1.9
3,377,075	-		IAI47_15990	0.63	-1.7
3,377,075	-		IAI47_15990	0.63	-2.1
3,377,120	+		IAI47_15990	0.66	-1.3
3,377,120	+		IAI47_15990	0.66	-2.6
3,377,120	+		IAI47_15990	0.66	-1.8
3,377,121	-		IAI47_15990	0.66	-1.8
3,377,132	+		IAI47_15990	0.67	-2.0
3,377,132	+		IAI47_15990	0.67	-0.6
3,377,144	+		IAI47_15990	0.67	-1.1
3,377,144	+		IAI47_15990	0.67	-2.2
3,377,145	-		IAI47_15990	0.67	-1.9
3,377,155	+		IAI47_15990	0.68	-1.8
3,377,155	+		IAI47_15990	0.68	-2.8
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