Strain Fitness in Pantoea sp. MT58 around IAI47_15870

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
3,349,401	+		IAI47_15865	0.39	-0.2
3,349,402	-		IAI47_15865	0.39	+0.0
3,349,455	+		IAI47_15865	0.44	+1.2
3,349,455	+		IAI47_15865	0.44	+0.2
3,349,455	+		IAI47_15865	0.44	-0.0
3,349,455	+		IAI47_15865	0.44	-1.3
3,349,455	+		IAI47_15865	0.44	+0.6
3,349,455	+		IAI47_15865	0.44	-1.2
3,349,455	+		IAI47_15865	0.44	-0.8
3,349,456	-		IAI47_15865	0.44	+0.2
3,349,456	-		IAI47_15865	0.44	+0.2
3,349,456	-		IAI47_15865	0.44	-0.6
3,349,456	-		IAI47_15865	0.44	+1.0
3,349,456	-		IAI47_15865	0.44	+1.8
3,349,456	-		IAI47_15865	0.44	-1.1
3,349,515	-		IAI47_15865	0.50	-0.1
3,349,583	+		IAI47_15865	0.56	+0.1
3,349,583	+		IAI47_15865	0.56	+1.0
3,349,584	-		IAI47_15865	0.56	-1.2
3,349,636	+		IAI47_15865	0.61	+0.5
3,349,636	+		IAI47_15865	0.61	+0.2
3,349,662	-		IAI47_15865	0.64	-0.8
3,349,662	-		IAI47_15865	0.64	+0.6
3,349,662	-		IAI47_15865	0.64	-1.1
3,349,662	-		IAI47_15865	0.64	+1.2
3,349,662	-		IAI47_15865	0.64	-0.4
3,349,688	+		IAI47_15865	0.66	+0.2
3,349,704	-		IAI47_15865	0.68	-1.4
3,349,704	-		IAI47_15865	0.68	-0.1
3,349,739	+		IAI47_15865	0.71	-0.3
3,349,739	+		IAI47_15865	0.71	-0.3
3,349,739	+		IAI47_15865	0.71	-0.8
3,349,739	+		IAI47_15865	0.71	-0.5
3,349,740	-		IAI47_15865	0.71	+0.5
3,349,740	-		IAI47_15865	0.71	+0.2
3,349,740	-		IAI47_15865	0.71	-1.4
3,349,740	-		IAI47_15865	0.71	-0.1
3,349,748	+		IAI47_15865	0.72	-1.0
3,349,748	+		IAI47_15865	0.72	+2.6
3,349,748	+		IAI47_15865	0.72	-1.4
3,349,749	-		IAI47_15865	0.72	-0.8
3,349,801	+		IAI47_15865	0.77	-0.2
3,349,801	+		IAI47_15865	0.77	+0.0
3,349,802	-		IAI47_15865	0.77	-0.4
3,349,820	+		IAI47_15865	0.79	-1.0
3,349,820	+		IAI47_15865	0.79	+0.2
3,349,821	-		IAI47_15865	0.79	+2.0
3,349,821	-		IAI47_15865	0.79	-1.1
3,349,821	-		IAI47_15865	0.79	+0.5
3,349,826	+		IAI47_15865	0.80	-2.7
3,349,827	-		IAI47_15865	0.80	-2.8
3,349,827	-		IAI47_15865	0.80	-0.8
3,349,877	+		IAI47_15865	0.85	-0.4
3,349,877	+		IAI47_15865	0.85	-0.8
3,349,878	-		IAI47_15865	0.85	-0.6
3,349,878	-		IAI47_15865	0.85	+0.3
3,349,878	-		IAI47_15865	0.85	-0.7
3,349,931	+		IAI47_15865	0.90	+1.0
3,349,931	+		IAI47_15865	0.90	+0.2
3,349,931	+		IAI47_15865	0.90	+0.4
3,349,931	+		IAI47_15865	0.90	+0.0
3,349,931	+		IAI47_15865	0.90	+0.0
3,349,932	-		IAI47_15865	0.90	+0.6
3,349,932	-		IAI47_15865	0.90	+0.2
3,349,932	-		IAI47_15865	0.90	+0.8
3,349,932	-		IAI47_15865	0.90	+0.6
3,349,992	+				-1.0
3,349,992	+				-2.1
3,349,992	+				-0.0
3,349,992	+				-0.0
3,349,992	+				-0.3
3,349,993	-				-0.1
3,350,003	+				+1.1
3,350,004	-				+0.2
3,350,030	+				+0.2
3,350,030	+				-1.1
3,350,031	-				-0.1
3,350,036	+				-0.8
3,350,036	+				+1.7
3,350,036	+				-1.4
3,350,036	+				+0.8
3,350,036	-				+0.3
3,350,037	-				+0.6
3,350,037	-				-0.1
3,350,037	-				-0.8
3,350,037	-				+0.2
3,350,037	-				-1.4
3,350,040	+				-0.4
3,350,040	+				-0.1
3,350,040	+				-3.4
3,350,040	+				-0.5
3,350,040	+				+0.2
3,350,040	+				+0.2
3,350,040	+				+1.4
3,350,040	+				+1.4
3,350,040	+				-0.1
3,350,040	+				-0.0
3,350,040	+				-1.5
3,350,040	+				+0.2
3,350,040	+				+1.6
3,350,040	+				+0.2
3,350,040	+				-0.2
3,350,040	+				-0.9
3,350,040	+				-1.0
3,350,041	-				-0.2
3,350,041	-				-0.4
3,350,041	-				-0.6
3,350,041	-				+0.2
3,350,041	-				-0.1
3,350,041	-				-1.6
3,350,041	-				+1.2
3,350,041	-				+0.2
3,350,041	-				+1.0
3,350,051	+				+1.5
3,350,051	+				-0.9
3,350,052	-				-0.3
3,350,052	-				-0.5
3,350,080	+				+0.5
3,350,080	+				+1.2
3,350,080	+				+0.9
3,350,080	+				+1.2
3,350,080	+				-2.1
3,350,080	+				-0.2
3,350,081	-				+0.4
3,350,081	-				+0.0
3,350,095	+				+1.0
3,350,095	+				+0.6
3,350,096	-				+2.2
3,350,096	-				+0.6
3,350,102	-				+0.6
3,350,102	-				-0.4
3,350,102	-				-0.3
3,350,107	-				-0.6
3,350,147	+				+0.4
3,350,148	-				-0.1
3,350,148	-				+1.8
3,350,151	+				+0.4
3,350,152	-				+0.2
3,350,152	-				-0.2
3,350,152	-				+1.2
3,350,172	+				+0.1
3,350,172	+				-0.5
3,350,172	+				-0.5
3,350,173	-				-0.7
3,350,219	-				+0.2
3,350,230	+				-1.4
3,350,230	+				-0.2
3,350,248	+				-0.1
3,350,248	+				+0.2
3,350,248	+				-0.2
3,350,248	+				-0.3
3,350,249	-				+0.2
3,350,276	+				-0.4
3,350,276	+				+0.6
3,350,276	+				+1.0
3,350,276	+				-0.1
3,350,278	+				-0.5
3,350,876	+				-1.0
3,350,876	+				-0.5
3,350,876	+				-0.0
3,350,877	-				-1.0
3,350,877	-				+0.6
3,350,877	-				-1.6
3,350,877	-				+0.0
3,350,879	+				-0.6
3,350,879	+				+1.2
3,350,879	+				+1.0
3,350,879	+				-0.8
3,350,879	+				-1.0
3,350,880	-				-0.3
3,350,880	-				-0.1
3,350,888	+				+0.4
3,350,888	+				-0.3
3,350,888	+				-0.9
3,350,888	+				-1.4
3,350,888	+				-0.5
3,350,888	+				+0.2
3,350,889	-				-0.4
3,350,889	-				+2.6
3,350,889	-				-1.2
3,350,889	-				-1.1
3,350,889	-				-0.0
3,350,958	-		IAI47_15875	0.10	-1.2
3,350,958	-		IAI47_15875	0.10	-0.1
3,350,965	+		IAI47_15875	0.11	-1.1
3,350,965	+		IAI47_15875	0.11	-0.6
3,350,965	+		IAI47_15875	0.11	-0.8
3,350,965	+		IAI47_15875	0.11	-0.4
3,350,966	-		IAI47_15875	0.11	-0.0
3,350,980	+		IAI47_15875	0.13	-0.3
3,350,981	-		IAI47_15875	0.13	-1.5
3,350,981	-		IAI47_15875	0.13	-0.8
3,350,981	-		IAI47_15875	0.13	-1.1
3,350,988	-		IAI47_15875	0.14	-0.2
3,351,145	+		IAI47_15875	0.35	+0.0
3,351,145	+		IAI47_15875	0.35	+0.8
3,351,145	+		IAI47_15875	0.35	-0.5
3,351,145	+		IAI47_15875	0.35	-0.1
3,351,146	-		IAI47_15875	0.35	+0.2
3,351,146	-		IAI47_15875	0.35	-2.4
3,351,167	+		IAI47_15875	0.38	+0.2
3,351,168	-		IAI47_15875	0.38	-0.2
3,351,204	-		IAI47_15875	0.43	-0.3
3,351,394	+		IAI47_15875	0.69	-0.8
3,351,394	+		IAI47_15875	0.69	+0.1
3,351,395	-		IAI47_15875	0.69	-0.1
3,351,428	+		IAI47_15875	0.73	-0.6
3,351,429	-		IAI47_15875	0.73	-1.1
3,351,429	-		IAI47_15875	0.73	-0.8
3,351,453	+		IAI47_15875	0.77	-1.0
3,351,462	-		IAI47_15875	0.78	-0.0
3,351,496	+		IAI47_15875	0.82	-0.2
3,351,516	+		IAI47_15875	0.85	+0.2
3,351,516	+		IAI47_15875	0.85	+2.2
3,351,516	+		IAI47_15875	0.85	+1.3
3,351,536	+		IAI47_15875	0.88	+0.2
3,351,536	+		IAI47_15875	0.88	-0.1
3,351,536	+		IAI47_15875	0.88	+0.1
3,351,536	+		IAI47_15875	0.88	-1.4
3,351,536	+		IAI47_15875	0.88	+0.5
3,351,560	+				+0.4
3,351,560	+				-2.0
3,351,572	+				-0.9
3,351,602	+				-0.5
3,351,603	-				-0.3
3,351,624	+				+0.8
3,351,624	+				+0.8
3,351,624	+				+1.0
3,351,625	-				+1.6
3,351,625	-				+0.7
3,351,625	-				+0.2
3,351,630	+				+0.4
3,351,630	+				-0.0
3,351,630	+				-1.3
3,351,630	+				-2.5
3,351,630	+				+0.1
3,351,630	+				+0.2
3,351,631	-				+1.1
3,351,631	-				+0.1
3,351,631	-				-0.1
3,351,631	-				+1.3
3,351,631	-				+0.6
3,351,724	+		IAI47_15880	0.45	-1.1
3,351,724	+		IAI47_15880	0.45	+0.2
3,351,739	+		IAI47_15880	0.53	-0.2
3,351,740	-		IAI47_15880	0.53	-0.3
3,351,740	-		IAI47_15880	0.53	-2.4
3,351,740	-		IAI47_15880	0.53	-1.4
3,351,794	-		IAI47_15880	0.80	-0.4
3,351,833	+				+1.6
3,351,833	+				+0.2
3,351,834	-				-0.4