Strain Fitness in Pantoea sp. MT58 around IAI47_14410

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
3,042,312	+				-0.8
3,042,473	+		IAI47_14405	0.24	-1.3
3,042,473	+		IAI47_14405	0.24	-0.8
3,042,474	-		IAI47_14405	0.25	+0.2
3,042,474	-		IAI47_14405	0.25	+0.9
3,042,474	-		IAI47_14405	0.25	-1.6
3,042,489	+		IAI47_14405	0.26	+0.2
3,042,489	+		IAI47_14405	0.26	-1.8
3,042,489	+		IAI47_14405	0.26	-0.1
3,042,490	-		IAI47_14405	0.26	-0.7
3,042,490	-		IAI47_14405	0.26	+0.2
3,042,490	-		IAI47_14405	0.26	-1.4
3,042,490	-		IAI47_14405	0.26	-0.1
3,042,558	+				+0.2
3,042,558	+		IAI47_14405	0.35	+0.2
3,042,558	+		IAI47_14405	0.35	-1.3
3,042,559	-		IAI47_14405	0.35	+1.1
3,042,559	-		IAI47_14405	0.35	+0.2
3,042,559	-		IAI47_14405	0.35	+0.3
3,042,650	+		IAI47_14405	0.46	+2.3
3,042,650	+		IAI47_14405	0.46	-0.7
3,042,650	+		IAI47_14405	0.46	-0.5
3,042,650	+		IAI47_14405	0.46	+0.6
3,042,651	-		IAI47_14405	0.47	-1.4
3,042,651	-		IAI47_14405	0.47	-1.2
3,042,691	+		IAI47_14405	0.51	+0.1
3,042,692	-		IAI47_14405	0.52	+0.6
3,042,692	-		IAI47_14405	0.52	-0.9
3,042,692	-		IAI47_14405	0.52	+0.7
3,042,703	+		IAI47_14405	0.53	+0.2
3,042,703	+		IAI47_14405	0.53	-1.5
3,042,804	+		IAI47_14405	0.66	+0.2
3,042,804	+		IAI47_14405	0.66	-0.4
3,042,804	+		IAI47_14405	0.66	-0.2
3,042,805	-		IAI47_14405	0.66	+2.2
3,042,815	+		IAI47_14405	0.67	+0.8
3,042,815	+		IAI47_14405	0.67	+0.0
3,042,816	-		IAI47_14405	0.67	+0.4
3,042,816	-		IAI47_14405	0.67	+1.5
3,042,841	-		IAI47_14405	0.70	-0.4
3,042,841	-		IAI47_14405	0.70	-0.3
3,042,841	-		IAI47_14405	0.70	+0.4
3,042,841	-		IAI47_14405	0.70	-0.6
3,042,841	-		IAI47_14405	0.70	+0.4
3,042,909	+		IAI47_14405	0.79	-0.5
3,042,909	+		IAI47_14405	0.79	-1.2
3,042,928	-		IAI47_14405	0.81	-1.0
3,042,945	+		IAI47_14405	0.83	+0.2
3,042,945	+		IAI47_14405	0.83	-1.3
3,042,946	-		IAI47_14405	0.83	+0.3
3,042,946	-		IAI47_14405	0.83	-1.4
3,042,946	-		IAI47_14405	0.83	+2.5
3,042,946	-		IAI47_14405	0.83	-0.2
3,042,946	-		IAI47_14405	0.83	+0.5
3,042,946	-		IAI47_14405	0.83	+0.2
3,043,009	+				-1.1
3,043,009	+				-0.8
3,043,010	-				+0.2
3,043,010	-				-0.5
3,043,010	-				+0.1
3,043,010	-				-0.8
3,043,010	-				+0.2
3,043,039	+				+0.2
3,043,039	+				-0.2
3,043,040	-				-0.8
3,043,040	-				-1.0
3,043,040	-				-0.0
3,043,050	+				+0.4
3,043,050	+				+1.5
3,043,050	+				+0.1
3,043,050	+				+0.0
3,043,050	+				-0.5
3,043,051	-				-0.4
3,043,051	-				-0.2
3,043,051	-				-0.0
3,043,129	+				+3.0
3,043,241	+				-0.8
3,043,242	-				-1.5
3,043,252	+				+1.2
3,043,310	+		IAI47_14410	0.12	-1.4
3,043,310	+		IAI47_14410	0.12	-0.9
3,043,311	-		IAI47_14410	0.12	-0.8
3,043,311	-		IAI47_14410	0.12	+0.2
3,043,386	-		IAI47_14410	0.28	-0.8
3,043,386	-		IAI47_14410	0.28	-1.0
3,043,386	-		IAI47_14410	0.28	-0.9
3,043,386	-		IAI47_14410	0.28	-1.0
3,043,386	-		IAI47_14410	0.28	-0.8
3,043,386	-		IAI47_14410	0.28	-2.4
3,043,386	-		IAI47_14410	0.28	-1.4
3,043,386	-		IAI47_14410	0.28	-0.9
3,043,386	-		IAI47_14410	0.28	-1.2
3,043,387	+		IAI47_14410	0.28	-0.7
3,043,388	-		IAI47_14410	0.28	-0.8
3,043,388	-		IAI47_14410	0.28	+0.2
3,043,388	-		IAI47_14410	0.28	+0.2
3,043,388	-		IAI47_14410	0.28	+1.5
3,043,388	-		IAI47_14410	0.28	-0.2
3,043,388	-		IAI47_14410	0.28	+0.2
3,043,507	+		IAI47_14410	0.53	-0.1
3,043,507	+		IAI47_14410	0.53	-2.5
3,043,507	+		IAI47_14410	0.53	+1.2
3,043,507	+		IAI47_14410	0.53	+0.2
3,043,508	-		IAI47_14410	0.53	-0.6
3,043,544	+		IAI47_14410	0.61	-0.5
3,043,559	-		IAI47_14410	0.64	-1.0
3,043,592	-		IAI47_14410	0.71	-1.1
3,043,592	-		IAI47_14410	0.71	-0.2
3,043,633	+		IAI47_14410	0.79	-0.6
3,043,633	+		IAI47_14410	0.79	+0.5
3,043,633	+		IAI47_14410	0.79	+1.2
3,043,633	+		IAI47_14410	0.79	+2.2
3,043,634	-		IAI47_14410	0.79	-0.8
3,043,645	+		IAI47_14410	0.82	-1.4
3,043,730	+				-0.8
3,043,730	+				-0.0
3,043,731	-				-0.3
3,043,821	+		IAI47_14415	0.11	-0.6
3,043,822	-		IAI47_14415	0.11	-0.0
3,043,822	-		IAI47_14415	0.11	-0.7
3,043,822	-		IAI47_14415	0.11	+0.6
3,043,930	+		IAI47_14415	0.23	-2.4
3,043,930	+		IAI47_14415	0.23	-0.8
3,043,930	+		IAI47_14415	0.23	-1.6
3,043,930	+		IAI47_14415	0.23	-1.8
3,043,930	+		IAI47_14415	0.23	+0.3
3,043,931	-		IAI47_14415	0.23	+2.9
3,043,931	-		IAI47_14415	0.23	+0.8
3,043,939	+		IAI47_14415	0.24	+1.2
3,043,939	+		IAI47_14415	0.24	-0.4
3,043,939	+		IAI47_14415	0.24	-0.0
3,043,939	+		IAI47_14415	0.24	+1.1
3,043,939	+		IAI47_14415	0.24	-0.2
3,043,939	+		IAI47_14415	0.24	-0.5
3,043,939	+		IAI47_14415	0.24	+0.2
3,043,939	+		IAI47_14415	0.24	-0.1
3,043,939	+		IAI47_14415	0.24	+2.5
3,043,939	+		IAI47_14415	0.24	-1.1
3,043,939	+		IAI47_14415	0.24	+0.9
3,043,939	+		IAI47_14415	0.24	+0.6
3,043,939	+		IAI47_14415	0.24	+0.2
3,043,940	-		IAI47_14415	0.24	+0.6
3,043,940	-		IAI47_14415	0.24	-0.8
3,043,940	-		IAI47_14415	0.24	+0.5
3,043,940	-		IAI47_14415	0.24	-1.1
3,043,943	+		IAI47_14415	0.25	+0.4
3,043,943	+		IAI47_14415	0.25	+1.2
3,043,943	+		IAI47_14415	0.25	+0.7
3,043,944	-		IAI47_14415	0.25	-1.4
3,043,944	-		IAI47_14415	0.25	-0.2
3,043,944	-		IAI47_14415	0.25	+0.2
3,043,944	-		IAI47_14415	0.25	-0.4
3,044,049	+		IAI47_14415	0.37	-0.4
3,044,049	+		IAI47_14415	0.37	+0.4
3,044,050	-		IAI47_14415	0.37	-0.4
3,044,052	+		IAI47_14415	0.37	+0.5
3,044,052	+		IAI47_14415	0.37	+0.2
3,044,052	+		IAI47_14415	0.37	+0.7
3,044,052	+		IAI47_14415	0.37	+1.5
3,044,052	+		IAI47_14415	0.37	-0.2
3,044,053	-		IAI47_14415	0.37	-1.4
3,044,053	-		IAI47_14415	0.37	+1.8
3,044,053	-		IAI47_14415	0.37	+3.5
3,044,053	-		IAI47_14415	0.37	-2.4
3,044,053	-		IAI47_14415	0.37	+0.6
3,044,053	-		IAI47_14415	0.37	-0.5
3,044,053	-		IAI47_14415	0.37	+0.2
3,044,053	-		IAI47_14415	0.37	+0.2
3,044,053	-		IAI47_14415	0.37	-0.2
3,044,053	-		IAI47_14415	0.37	+0.4
3,044,080	+		IAI47_14415	0.40	+0.6
3,044,080	+		IAI47_14415	0.40	+0.4
3,044,080	+		IAI47_14415	0.40	+2.2
3,044,127	+		IAI47_14415	0.46	+1.2
3,044,142	+		IAI47_14415	0.47	+1.9
3,044,142	+		IAI47_14415	0.47	-0.8
3,044,143	-		IAI47_14415	0.48	+0.2
3,044,143	-		IAI47_14415	0.48	+1.0
3,044,304	+		IAI47_14415	0.66	-1.0
3,044,304	+		IAI47_14415	0.66	+0.9
3,044,304	+		IAI47_14415	0.66	+0.7
3,044,305	-		IAI47_14415	0.66	-0.4
3,044,305	-		IAI47_14415	0.66	-1.1
3,044,305	-		IAI47_14415	0.66	+0.4
3,044,305	-		IAI47_14415	0.66	+0.2
3,044,344	+		IAI47_14415	0.71	+0.8
3,044,345	-		IAI47_14415	0.71	-0.6
3,044,401	-		IAI47_14415	0.77	-0.7
3,044,476	+		IAI47_14415	0.86	+0.2
3,044,477	-		IAI47_14415	0.86	-0.6
3,044,514	+				+0.2
3,044,515	-				+0.2
3,044,565	+				+0.6
3,044,565	+				+0.9
3,044,565	+				-1.1
3,044,565	+				-0.1
3,044,565	+				+0.8
3,044,565	+				+1.2
3,044,566	-				-0.4
3,044,591	+				-0.4
3,044,634	-				+0.5
3,044,638	+				-0.4
3,044,639	-				+0.9
3,044,639	-				+0.2
3,044,669	+				-0.1
3,044,683	+				+0.3
3,044,683	+				-0.6
3,044,683	+				+0.7
3,044,683	+				+0.1
3,044,684	-				-0.8
3,044,684	-				-0.8
3,044,705	+				-0.5
3,044,705	+				-1.2
3,044,706	-				-1.0
3,044,706	-				+0.2
3,044,706	-				+0.2
3,044,706	-				-0.0
3,044,714	+				-1.1
3,044,714	+				-0.3
3,044,714	+				+0.4
3,044,715	-				+0.8
3,044,715	-				+0.6