Strain Fitness in Pantoea sp. MT58 around IAI47_13980

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,954,295	+				+0.4
2,954,295	+				-0.8
2,954,295	+				+0.5
2,954,295	+				+1.0
2,954,295	+				+0.6
2,954,296	-				-1.4
2,954,296	-				+0.9
2,954,296	-				+0.5
2,954,303	+				+0.8
2,954,303	+				-0.8
2,954,303	+				+1.0
2,954,303	+				+0.4
2,954,303	+				-0.0
2,954,304	-				-0.1
2,954,326	+				-0.4
2,954,326	+				-0.3
2,954,326	+				+0.5
2,954,326	+				+1.4
2,954,326	+				+0.7
2,954,326	+				+0.1
2,954,326	+				+2.8
2,954,326	+				-0.4
2,954,326	+				+0.8
2,954,326	+				-0.0
2,954,326	+				-0.1
2,954,326	+				+0.6
2,954,326	+				+1.0
2,954,326	+				+0.4
2,954,326	+				+1.0
2,954,326	+				+0.8
2,954,326	+				+0.5
2,954,326	+				+0.8
2,954,326	+				+0.6
2,954,326	+				+0.4
2,954,326	+				+1.3
2,954,326	+				-0.8
2,954,326	+				+0.0
2,954,326	+				+0.8
2,954,326	+				+0.2
2,954,326	+				+0.2
2,954,326	+				-1.0
2,954,327	-				+0.4
2,954,327	-				+0.4
2,954,327	-				-1.6
2,954,327	-				-1.0
2,954,327	-				+0.2
2,954,327	-				+0.3
2,954,327	-				+1.1
2,954,327	-				+0.2
2,954,327	-				+3.2
2,954,327	-				+1.1
2,954,327	-				+2.5
2,954,327	-				+0.0
2,954,327	-				+0.3
2,954,327	-				+1.2
2,954,327	-				+0.6
2,954,327	-				+0.1
2,954,327	-				+0.5
2,954,327	-				-0.1
2,954,330	+				-0.8
2,954,330	+				+1.6
2,954,330	+				+0.2
2,954,330	+				-0.4
2,954,330	+				-0.1
2,954,330	+				-0.3
2,954,331	-				-0.1
2,954,331	-				+0.1
2,954,331	-				+1.0
2,954,331	-				+0.5
2,954,331	-				+0.5
2,954,331	-				-0.9
2,954,363	+				-0.7
2,954,363	+				+2.2
2,954,365	+				-0.5
2,954,365	+				+0.2
2,954,365	+				+2.8
2,954,365	+				-0.9
2,954,366	-				+1.0
2,954,366	-				+0.6
2,954,366	-				+3.2
2,954,454	+				-2.5
2,954,454	+				-1.0
2,954,455	-				-1.1
2,954,482	-				+0.0
2,954,486	+				-0.8
2,954,486	+				-0.8
2,954,486	+				-0.4
2,954,486	+				-0.3
2,954,486	+				-0.4
2,954,486	+				-2.1
2,954,486	+				+0.2
2,954,486	+				+0.8
2,954,486	+				-0.6
2,954,486	+				+0.5
2,954,486	+				+0.2
2,954,486	+				-0.5
2,954,486	+				+0.0
2,954,486	+				+0.2
2,954,486	+				-0.8
2,954,486	+				-1.4
2,954,486	+				-1.8
2,954,486	+				-0.1
2,954,486	+				-0.7
2,954,486	+				+0.1
2,954,486	+				+1.0
2,954,487	-				+1.2
2,954,487	-				-0.2
2,954,487	-				+0.4
2,954,487	-				+1.4
2,954,487	-				+1.1
2,954,487	-				+1.4
2,954,487	-				+0.0
2,954,487	-				-0.9
2,954,487	-				+3.3
2,954,487	-				+0.7
2,954,490	+				-1.0
2,954,491	-				-0.5
2,954,514	-				-0.3
2,954,539	+				+0.2
2,954,539	+				+2.6
2,954,540	-				-0.8
2,954,540	-				-1.2
2,954,540	-				+1.5
2,954,540	-				-0.1
2,954,574	+				+0.8
2,954,574	+				+0.9
2,954,574	+				+0.3
2,954,612	-		IAI47_13975	0.13	+0.2
2,954,715	+		IAI47_13975	0.27	+0.7
2,954,715	+		IAI47_13975	0.27	+0.3
2,954,715	+		IAI47_13975	0.27	+0.5
2,954,715	+		IAI47_13975	0.27	+0.4
2,954,715	+		IAI47_13975	0.27	-0.5
2,954,715	+		IAI47_13975	0.27	+1.0
2,954,715	+		IAI47_13975	0.27	+0.2
2,954,716	-		IAI47_13975	0.27	+2.0
2,954,716	-		IAI47_13975	0.27	-0.2
2,954,716	-		IAI47_13975	0.27	+0.4
2,954,716	-		IAI47_13975	0.27	+0.3
2,954,716	-		IAI47_13975	0.27	+3.1
2,954,716	-		IAI47_13975	0.27	-0.1
2,954,716	-		IAI47_13975	0.27	+1.0
2,954,716	-		IAI47_13975	0.27	+1.0
2,954,716	-		IAI47_13975	0.27	+0.7
2,954,732	+		IAI47_13975	0.29	-0.0
2,954,733	-		IAI47_13975	0.30	+1.3
2,954,733	-		IAI47_13975	0.30	+1.5
2,954,733	-		IAI47_13975	0.30	-2.1
2,954,766	+		IAI47_13975	0.34	+1.6
2,954,766	+		IAI47_13975	0.34	+1.7
2,954,766	+		IAI47_13975	0.34	+1.1
2,954,767	-		IAI47_13975	0.34	+0.2
2,954,767	-		IAI47_13975	0.34	+0.4
2,954,813	+		IAI47_13975	0.40	+1.9
2,954,813	+		IAI47_13975	0.40	+1.4
2,954,813	+		IAI47_13975	0.40	-0.4
2,954,814	-		IAI47_13975	0.40	+1.2
2,954,814	-		IAI47_13975	0.40	-0.4
2,954,814	-		IAI47_13975	0.40	+0.8
2,954,962	+		IAI47_13975	0.60	-0.0
2,954,962	+		IAI47_13975	0.60	+0.5
2,954,979	+		IAI47_13975	0.63	+2.0
2,954,979	+		IAI47_13975	0.63	+1.9
2,954,979	+		IAI47_13975	0.63	+0.2
2,954,980	-		IAI47_13975	0.63	+0.6
2,954,980	-		IAI47_13975	0.63	+0.6
2,954,985	+		IAI47_13975	0.64	+0.0
2,954,985	+		IAI47_13975	0.64	-0.1
2,954,985	+		IAI47_13975	0.64	-0.0
2,954,985	+		IAI47_13975	0.64	+3.2
2,954,985	+		IAI47_13975	0.64	+0.8
2,954,985	+		IAI47_13975	0.64	+0.6
2,954,985	+		IAI47_13975	0.64	+2.7
2,954,986	-		IAI47_13975	0.64	+0.2
2,954,986	-		IAI47_13975	0.64	+1.1
2,954,986	-		IAI47_13975	0.64	+0.2
2,954,989	+		IAI47_13975	0.64	+1.5
2,954,989	+		IAI47_13975	0.64	+1.8
2,954,989	+		IAI47_13975	0.64	+0.9
2,954,989	+		IAI47_13975	0.64	-0.4
2,954,989	+		IAI47_13975	0.64	+0.9
2,954,989	+		IAI47_13975	0.64	+1.0
2,954,989	+		IAI47_13975	0.64	+0.8
2,954,989	+		IAI47_13975	0.64	+1.3
2,954,989	+		IAI47_13975	0.64	-0.2
2,954,989	+		IAI47_13975	0.64	-0.4
2,954,990	-		IAI47_13975	0.64	+1.0
2,954,990	-		IAI47_13975	0.64	+1.3
2,954,990	-		IAI47_13975	0.64	+1.0
2,954,990	-		IAI47_13975	0.64	+0.9
2,954,990	-		IAI47_13975	0.64	+1.6
2,954,990	-		IAI47_13975	0.64	-0.3
2,954,990	-		IAI47_13975	0.64	+0.2
2,954,990	-		IAI47_13975	0.64	+1.0
2,954,990	-		IAI47_13975	0.64	+0.9
2,954,990	-		IAI47_13975	0.64	-0.2
2,954,990	-		IAI47_13975	0.64	-0.0
2,954,990	-		IAI47_13975	0.64	+0.6
2,954,990	-		IAI47_13975	0.64	+1.2
2,954,990	-		IAI47_13975	0.64	-0.7
2,954,990	-		IAI47_13975	0.64	+0.8
2,955,138	+		IAI47_13975	0.84	-0.3
2,955,138	+		IAI47_13975	0.84	+0.5
2,955,139	-		IAI47_13975	0.84	+0.5
2,955,139	-		IAI47_13975	0.84	+0.2
2,955,168	+		IAI47_13975	0.88	-1.1
2,955,169	-		IAI47_13975	0.88	+1.9
2,955,169	-		IAI47_13975	0.88	+0.6
2,955,191	+				+1.5
2,955,191	+				+1.0
2,955,191	+				+0.2
2,955,191	+				-0.5
2,955,191	+				+0.7
2,955,192	-				-1.1
2,955,192	-				+0.2
2,955,192	-				+0.2
2,955,192	-				+1.6
2,955,192	-				-0.0
2,955,192	-				+0.1
2,955,192	-				+0.8
2,955,252	+				+2.1
2,955,252	+				+2.0
2,955,252	+				+2.2
2,955,253	-				+0.5
2,955,253	-				-0.4
2,955,253	-				+1.4
2,955,253	-				+0.8
2,955,253	-				-1.4
2,955,253	-				+0.7
2,955,253	-				+0.3
2,955,253	-				+0.9
2,955,253	-				+2.1
2,955,253	-				+1.7
2,955,253	-				+0.7
2,955,253	-				+1.2
2,955,253	-				+0.1
2,955,253	-				+0.1
2,955,253	-				+1.6
2,955,257	+				+0.2
2,955,257	+				+0.9
2,955,258	-				+0.6
2,955,258	-				+0.4
2,955,296	+				+0.2
2,955,296	+				+1.1
2,955,297	-				+1.5
2,955,304	+				+0.6
2,955,313	-				+1.2
2,955,319	+				-0.1
2,955,319	+				+0.6
2,955,319	+				+2.2
2,955,320	-				-0.1
2,955,320	-				-0.3
2,955,320	-				+0.5
2,955,337	+		IAI47_13980	0.12	+1.2
2,955,400	+		IAI47_13980	0.22	+1.6
2,955,400	+		IAI47_13980	0.22	+0.8
2,955,400	+		IAI47_13980	0.22	+0.8
2,955,401	-		IAI47_13980	0.22	+1.3
2,955,401	-		IAI47_13980	0.22	+1.0
2,955,428	+		IAI47_13980	0.26	+0.2
2,955,428	+		IAI47_13980	0.26	+2.2
2,955,428	+		IAI47_13980	0.26	+0.4
2,955,429	-		IAI47_13980	0.26	+0.6
2,955,479	+		IAI47_13980	0.33	-0.8
2,955,479	+		IAI47_13980	0.33	+1.3
2,955,479	+		IAI47_13980	0.33	+0.3
2,955,479	+		IAI47_13980	0.33	+1.2
2,955,479	+		IAI47_13980	0.33	-0.1
2,955,479	+		IAI47_13980	0.33	+1.4
2,955,479	+		IAI47_13980	0.33	+1.3
2,955,480	-		IAI47_13980	0.33	+0.9
2,955,480	-		IAI47_13980	0.33	+0.0
2,955,480	-		IAI47_13980	0.33	+0.4
2,955,480	-		IAI47_13980	0.33	+3.0
2,955,480	-		IAI47_13980	0.33	+1.6
2,955,526	+		IAI47_13980	0.40	-0.8
2,955,526	+		IAI47_13980	0.40	-0.0
2,955,584	+		IAI47_13980	0.49	+1.2
2,955,584	+		IAI47_13980	0.49	+0.6
2,955,585	-		IAI47_13980	0.49	+0.2
2,955,585	-		IAI47_13980	0.49	+1.6
2,955,585	-		IAI47_13980	0.49	+1.1
2,955,587	+		IAI47_13980	0.49	+2.0
2,955,588	-		IAI47_13980	0.49	+2.0
2,955,619	+		IAI47_13980	0.54	-0.0
2,955,619	+		IAI47_13980	0.54	+1.1
2,955,620	-		IAI47_13980	0.54	+0.4
2,955,638	-		IAI47_13980	0.57	+1.3
2,955,658	+		IAI47_13980	0.60	+0.1
2,955,659	-		IAI47_13980	0.60	+0.0
2,955,688	+		IAI47_13980	0.64	+0.8
2,955,689	-		IAI47_13980	0.64	+0.1
2,955,726	+		IAI47_13980	0.70	+2.2
2,955,757	+		IAI47_13980	0.74	+0.9
2,955,757	+		IAI47_13980	0.74	+0.6
2,955,757	+		IAI47_13980	0.74	-0.3
2,955,757	+		IAI47_13980	0.74	+0.8
2,955,757	+		IAI47_13980	0.74	+0.9
2,955,758	-		IAI47_13980	0.74	+1.4
2,955,758	-		IAI47_13980	0.74	+0.0
2,955,770	+		IAI47_13980	0.76	+0.2
2,955,770	+		IAI47_13980	0.76	-0.0
2,955,770	+		IAI47_13980	0.76	+1.0
2,955,770	+		IAI47_13980	0.76	+0.8
2,955,770	+		IAI47_13980	0.76	+0.2
2,955,771	-		IAI47_13980	0.76	+1.0
2,955,771	-		IAI47_13980	0.76	+1.8
2,955,771	-		IAI47_13980	0.76	+1.4
2,955,771	-		IAI47_13980	0.76	+0.3
2,955,771	-		IAI47_13980	0.76	+1.6
2,955,778	-		IAI47_13980	0.77	+0.8
2,955,812	-		IAI47_13980	0.82	-0.0
2,955,812	-		IAI47_13980	0.82	+0.3
2,955,812	-		IAI47_13980	0.82	+1.4
2,955,866	+				+1.1
2,955,867	-				+1.1
2,955,874	+				+0.2
2,955,905	+				-0.1
2,955,905	+				+0.2
2,955,906	-				+1.8
2,955,906	-				+0.0
2,955,906	-				+1.8
2,955,909	+				+0.7
2,955,910	-				+2.3
2,955,955	+				+0.7
2,955,955	+				+0.5
2,955,956	-				+0.1
2,955,956	-				+1.3
2,955,956	-				+0.7
2,955,962	+				+0.8
2,955,962	+				+1.1
2,955,963	-				-0.1
2,955,963	-				-0.1
2,955,963	-				+0.8
2,955,963	-				+0.7
2,955,963	-				+1.5
2,955,963	-				+1.5
2,955,963	-				+1.3
2,956,023	+		IAI47_13985	0.13	+0.6
2,956,024	-		IAI47_13985	0.13	+0.4
2,956,024	-		IAI47_13985	0.13	+0.9
2,956,024	-		IAI47_13985	0.13	-0.1
2,956,024	-		IAI47_13985	0.13	+1.2
2,956,176	+		IAI47_13985	0.34	+1.3
2,956,213	+		IAI47_13985	0.39	+0.5
2,956,213	+		IAI47_13985	0.39	+0.9
2,956,214	-		IAI47_13985	0.39	+0.0
2,956,214	-		IAI47_13985	0.39	+0.9
2,956,214	-		IAI47_13985	0.39	+0.8
2,956,214	-		IAI47_13985	0.39	+1.0
2,956,214	-		IAI47_13985	0.39	-0.4
2,956,216	+		IAI47_13985	0.39	+0.7
2,956,216	+		IAI47_13985	0.39	+0.2
2,956,217	-		IAI47_13985	0.39	+1.4
2,956,239	+		IAI47_13985	0.42	+1.2
2,956,239	+		IAI47_13985	0.42	-0.2
2,956,240	-		IAI47_13985	0.42	+0.6
2,956,396	+		IAI47_13985	0.64	+0.8
2,956,396	+		IAI47_13985	0.64	+1.7
2,956,396	+		IAI47_13985	0.64	+0.8
2,956,396	+		IAI47_13985	0.64	+0.5
2,956,396	+		IAI47_13985	0.64	+1.5
2,956,396	+		IAI47_13985	0.64	+0.7
2,956,397	-		IAI47_13985	0.64	-0.8
2,956,397	-		IAI47_13985	0.64	-0.1
2,956,556	-		IAI47_13985	0.86	+1.9
2,956,574	-		IAI47_13985	0.88	+0.7
2,956,603	+				+2.8
2,956,603	+				+0.6
2,956,603	+				+0.5
2,956,604	-				-1.1
2,956,604	-				+0.9
2,956,607	-				+2.0
2,956,628	-				+0.3
2,956,655	+				+0.4
2,956,664	+				+0.2
2,956,664	+				+0.6
2,956,664	+				+0.2
2,956,664	+				+0.2
2,956,664	+				+0.8
2,956,664	+				+0.9
2,956,665	-				+1.3
2,956,665	-				+0.5
2,956,665	-				+0.2
2,956,665	-				+1.2
2,956,692	-				+1.2
2,956,692	-				-1.1
2,956,701	+				-0.8
2,956,701	+				+1.8
2,956,761	-		IAI47_13990	0.12	-2.2
2,956,774	+		IAI47_13990	0.15	+0.2
2,956,775	-		IAI47_13990	0.15	+0.2
2,956,776	+		IAI47_13990	0.15	-0.2
2,956,776	+		IAI47_13990	0.15	-0.1
2,956,776	+		IAI47_13990	0.15	+0.9
2,956,777	-		IAI47_13990	0.15	-1.0
2,956,777	-		IAI47_13990	0.15	-1.0
2,956,789	+		IAI47_13990	0.18	+0.6
2,956,826	+		IAI47_13990	0.25	+1.4
2,956,827	-		IAI47_13990	0.26	-0.3
2,956,827	-		IAI47_13990	0.26	+2.1
2,956,827	-		IAI47_13990	0.26	-1.1
2,956,827	-		IAI47_13990	0.26	+1.4
2,956,827	-		IAI47_13990	0.26	-0.1
2,956,845	+		IAI47_13990	0.29	-0.7
2,956,845	+		IAI47_13990	0.29	-0.4
2,956,846	-		IAI47_13990	0.30	-0.8
2,956,901	-		IAI47_13990	0.41	-0.7
2,956,901	-		IAI47_13990	0.41	+0.4
2,956,907	-		IAI47_13990	0.42	-0.9
2,956,909	+		IAI47_13990	0.43	-0.9
2,956,909	+		IAI47_13990	0.43	-0.0
2,956,910	-		IAI47_13990	0.43	-0.1