Strain Fitness in Pantoea sp. MT58 around IAI47_12740

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,680,056	+		IAI47_12730	0.83	+0.0
2,680,056	+		IAI47_12730	0.83	+1.0
2,680,056	+		IAI47_12730	0.83	+1.7
2,680,057	-		IAI47_12730	0.83	+1.7
2,680,057	-		IAI47_12730	0.83	-1.2
2,680,057	-		IAI47_12730	0.83	+0.4
2,680,082	+		IAI47_12730	0.85	+0.0
2,680,083	-		IAI47_12730	0.85	-0.3
2,680,083	-		IAI47_12730	0.85	-0.0
2,680,221	-				-0.8
2,680,290	+				+0.6
2,680,290	+				+0.2
2,680,290	+				-0.8
2,680,290	+				+2.7
2,680,291	-				+0.9
2,680,291	-				+2.6
2,680,291	-				-0.1
2,680,291	-				+0.7
2,680,291	-				-0.4
2,680,298	+				+0.2
2,680,298	+				-0.8
2,680,299	-				+1.7
2,680,299	-				-0.0
2,680,340	+				-0.4
2,680,341	-		IAI47_12735	0.10	-0.7
2,680,514	+		IAI47_12735	0.32	-0.5
2,680,555	-		IAI47_12735	0.37	+0.2
2,680,575	+		IAI47_12735	0.40	+0.5
2,680,575	+		IAI47_12735	0.40	+1.0
2,680,576	-		IAI47_12735	0.40	+0.4
2,680,576	-		IAI47_12735	0.40	-0.2
2,680,576	-		IAI47_12735	0.40	+0.2
2,680,576	-		IAI47_12735	0.40	-0.8
2,680,576	-		IAI47_12735	0.40	-0.6
2,680,679	-		IAI47_12735	0.53	-0.3
2,680,679	-		IAI47_12735	0.53	-1.1
2,680,679	-		IAI47_12735	0.53	+0.5
2,680,686	+		IAI47_12735	0.54	+0.6
2,680,686	+		IAI47_12735	0.54	+0.4
2,680,686	+		IAI47_12735	0.54	+0.2
2,680,686	+		IAI47_12735	0.54	-0.6
2,680,686	+		IAI47_12735	0.54	+1.5
2,680,686	+		IAI47_12735	0.54	-0.2
2,680,686	+		IAI47_12735	0.54	-0.6
2,680,687	-		IAI47_12735	0.54	-1.1
2,680,687	-		IAI47_12735	0.54	+1.4
2,680,687	-		IAI47_12735	0.54	-1.3
2,680,687	-		IAI47_12735	0.54	-0.1
2,680,687	-		IAI47_12735	0.54	-0.3
2,680,687	-		IAI47_12735	0.54	-2.2
2,680,687	-		IAI47_12735	0.54	+0.7
2,680,687	-		IAI47_12735	0.54	+0.2
2,680,687	-		IAI47_12735	0.54	+1.3
2,680,690	+		IAI47_12735	0.54	-0.4
2,680,690	+		IAI47_12735	0.54	-0.8
2,680,691	-		IAI47_12735	0.54	+0.2
2,680,691	-		IAI47_12735	0.54	+0.7
2,680,691	-		IAI47_12735	0.54	-0.4
2,680,692	-		IAI47_12735	0.54	-0.6
2,680,741	+		IAI47_12735	0.61	+2.5
2,680,741	+		IAI47_12735	0.61	-0.5
2,680,741	+		IAI47_12735	0.61	-0.7
2,680,742	-		IAI47_12735	0.61	+0.2
2,680,742	-		IAI47_12735	0.61	+0.7
2,680,742	-		IAI47_12735	0.61	-0.6
2,680,742	-		IAI47_12735	0.61	-0.5
2,680,742	-		IAI47_12735	0.61	-0.8
2,680,742	-		IAI47_12735	0.61	+0.7
2,680,742	-		IAI47_12735	0.61	+0.1
2,680,767	+		IAI47_12735	0.64	+1.5
2,680,768	-		IAI47_12735	0.64	+2.7
2,680,768	-		IAI47_12735	0.64	-1.0
2,680,800	+		IAI47_12735	0.68	-0.1
2,680,800	+		IAI47_12735	0.68	+2.2
2,680,801	-		IAI47_12735	0.68	+1.6
2,680,801	-		IAI47_12735	0.68	-2.0
2,680,863	+		IAI47_12735	0.76	-1.4
2,680,864	-		IAI47_12735	0.76	+0.2
2,680,864	-		IAI47_12735	0.76	-0.4
2,680,944	+		IAI47_12735	0.86	+1.7
2,680,944	+		IAI47_12735	0.86	-0.3
2,680,944	+		IAI47_12735	0.86	-1.4
2,680,945	-		IAI47_12735	0.86	-0.5
2,680,952	-		IAI47_12735	0.87	-0.8
2,680,992	-				+0.6
2,681,121	+				-1.0
2,681,121	+				+0.4
2,681,122	-				+1.4
2,681,122	-				+0.6
2,681,122	-				+1.3
2,681,137	+		IAI47_12740	0.11	-0.7
2,681,137	+		IAI47_12740	0.11	+2.2
2,681,137	+		IAI47_12740	0.11	-0.4
2,681,138	-		IAI47_12740	0.11	+2.3
2,681,138	-		IAI47_12740	0.11	-1.2
2,681,144	+		IAI47_12740	0.12	+0.4
2,681,144	+		IAI47_12740	0.12	+0.2
2,681,159	+		IAI47_12740	0.14	+1.2
2,681,159	+		IAI47_12740	0.14	-0.3
2,681,160	-		IAI47_12740	0.14	+0.7
2,681,304	-		IAI47_12740	0.32	-0.2
2,681,423	-		IAI47_12740	0.47	+0.6
2,681,616	-		IAI47_12740	0.72	-2.5
2,681,616	-		IAI47_12740	0.72	-0.5
2,681,616	-		IAI47_12740	0.72	-0.6
2,681,616	-		IAI47_12740	0.72	+0.6
2,681,773	+				-0.9
2,681,774	-				+0.6
2,681,840	+				+1.2
2,681,874	-				-0.2
2,681,881	+				-2.0
2,681,882	-				+2.2
2,681,882	-				-0.6
2,681,882	-				-0.2
2,681,882	-				+0.6
2,681,882	-				+0.2
2,681,894	+				-1.6
2,681,894	+				+0.2
2,681,894	+				+0.6
2,681,894	+				-0.4
2,681,894	+				+0.2
2,681,895	-				+0.6
2,681,895	-				+0.4
2,681,895	-				-0.4
2,681,895	-				-0.7
2,681,895	-				+0.4
2,681,895	-				+0.9
2,681,942	+				+0.5
2,681,961	+				+0.3
2,682,021	-				+0.5
2,682,046	+				+1.2
2,682,047	-				+0.6
2,682,047	-				-0.1
2,682,111	+				-1.3
2,682,111	+				+0.5
2,682,111	+				-0.8
2,682,111	+				-1.2
2,682,112	-				+1.7
2,682,112	-				+1.0
2,682,112	-				+0.2
2,682,112	-				-0.8
2,682,114	-				+0.2
2,682,195	+		IAI47_12745	0.11	-0.4
2,682,195	+		IAI47_12745	0.11	+0.5
2,682,196	-		IAI47_12745	0.11	+1.2
2,682,204	+		IAI47_12745	0.11	-0.8
2,682,204	+		IAI47_12745	0.11	+0.7
2,682,204	+		IAI47_12745	0.11	+2.5
2,682,204	+		IAI47_12745	0.11	+0.2
2,682,205	-		IAI47_12745	0.11	-0.1
2,682,205	-		IAI47_12745	0.11	-0.3
2,682,237	+		IAI47_12745	0.12	-0.5
2,682,237	+		IAI47_12745	0.12	+2.7
2,682,237	+		IAI47_12745	0.12	+0.7
2,682,238	-		IAI47_12745	0.12	-0.8
2,682,238	-		IAI47_12745	0.12	-0.8
2,682,238	-		IAI47_12745	0.12	-0.3
2,682,323	+		IAI47_12745	0.16	-1.0
2,682,416	+		IAI47_12745	0.19	+1.3
2,682,428	-		IAI47_12745	0.20	+0.2
2,682,428	-		IAI47_12745	0.20	+0.6
2,682,467	+		IAI47_12745	0.21	+0.2
2,682,467	+		IAI47_12745	0.21	-0.8
2,682,468	-		IAI47_12745	0.21	+0.7
2,682,468	-		IAI47_12745	0.21	-0.4
2,682,480	+		IAI47_12745	0.22	+1.7
2,682,481	-		IAI47_12745	0.22	+2.5
2,682,481	-		IAI47_12745	0.22	-0.8
2,682,548	+		IAI47_12745	0.24	-0.8
2,682,548	+		IAI47_12745	0.24	+0.5
2,682,548	+		IAI47_12745	0.24	-0.8
2,682,549	-		IAI47_12745	0.24	+1.0
2,682,718	+		IAI47_12745	0.31	-0.6
2,682,718	+		IAI47_12745	0.31	+0.3
2,682,718	+		IAI47_12745	0.31	-1.4
2,682,719	-		IAI47_12745	0.31	-0.8
2,682,719	-		IAI47_12745	0.31	+0.6
2,682,721	+		IAI47_12745	0.31	+0.2
2,682,721	+		IAI47_12745	0.31	+0.2
2,682,722	-		IAI47_12745	0.31	+0.4
2,682,722	-		IAI47_12745	0.31	+0.1
2,682,779	+		IAI47_12745	0.33	-1.1
2,682,779	+		IAI47_12745	0.33	-0.1
2,682,803	+		IAI47_12745	0.34	+0.6
2,682,803	+		IAI47_12745	0.34	+1.4
2,682,803	+		IAI47_12745	0.34	+0.3
2,682,803	+		IAI47_12745	0.34	+3.2
2,682,804	-		IAI47_12745	0.34	+0.0
2,682,804	-		IAI47_12745	0.34	+0.4