Strain Fitness in Pantoea sp. MT58 around IAI47_12370

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,612,094	+		IAI47_12360	0.71	-1.7
2,612,094	+		IAI47_12360	0.71	-0.5
2,612,095	-		IAI47_12360	0.71	+2.0
2,612,102	-		IAI47_12360	0.72	-1.0
2,612,250	+		IAI47_12360	0.83	+0.2
2,612,274	+		IAI47_12360	0.85	+1.7
2,612,282	+		IAI47_12360	0.85	-0.8
2,612,283	-		IAI47_12360	0.85	-0.4
2,612,315	+		IAI47_12360	0.88	-0.1
2,612,316	-		IAI47_12360	0.88	+0.5
2,612,316	-		IAI47_12360	0.88	+0.7
2,612,373	+				-0.5
2,612,373	+				+1.2
2,612,373	+				+0.6
2,612,373	+				-1.1
2,612,373	+				-0.0
2,612,373	+				+0.2
2,612,374	-				-0.9
2,612,539	+		IAI47_12365	0.12	+1.2
2,612,539	+		IAI47_12365	0.12	-0.1
2,612,539	+		IAI47_12365	0.12	+0.2
2,612,540	-		IAI47_12365	0.12	-1.8
2,612,594	+		IAI47_12365	0.22	+0.3
2,612,594	+		IAI47_12365	0.22	+0.6
2,612,594	+		IAI47_12365	0.22	+0.4
2,612,594	+		IAI47_12365	0.22	-0.8
2,612,594	+		IAI47_12365	0.22	-0.0
2,612,594	+		IAI47_12365	0.22	+0.6
2,612,594	+		IAI47_12365	0.22	-2.0
2,612,595	-		IAI47_12365	0.22	+0.4
2,612,595	-		IAI47_12365	0.22	+0.2
2,612,595	-		IAI47_12365	0.22	-0.5
2,612,595	-		IAI47_12365	0.22	-1.8
2,612,595	-		IAI47_12365	0.22	+0.9
2,612,596	+		IAI47_12365	0.22	-0.4
2,612,596	+		IAI47_12365	0.22	-0.8
2,612,596	+		IAI47_12365	0.22	+0.2
2,612,596	+		IAI47_12365	0.22	+0.8
2,612,596	+		IAI47_12365	0.22	-0.7
2,612,596	+				-0.8
2,612,596	+		IAI47_12365	0.22	-0.4
2,612,596	+		IAI47_12365	0.22	-1.0
2,612,596	+		IAI47_12365	0.22	-0.7
2,612,596	+		IAI47_12365	0.22	+0.4
2,612,596	+		IAI47_12365	0.22	-1.3
2,612,596	+		IAI47_12365	0.22	-0.1
2,612,597	-		IAI47_12365	0.22	-0.8
2,612,597	-		IAI47_12365	0.22	-0.8
2,612,597	-		IAI47_12365	0.22	-0.6
2,612,597	-		IAI47_12365	0.22	+1.2
2,612,597	-		IAI47_12365	0.22	-1.3
2,612,597	-		IAI47_12365	0.22	+1.3
2,612,597	-		IAI47_12365	0.22	+0.3
2,612,597	-		IAI47_12365	0.22	-1.3
2,612,597	-		IAI47_12365	0.22	+1.0
2,612,597	-		IAI47_12365	0.22	-0.5
2,612,659	+		IAI47_12365	0.33	+0.5
2,612,659	+		IAI47_12365	0.33	+0.5
2,612,659	+		IAI47_12365	0.33	-0.1
2,612,659	+		IAI47_12365	0.33	-1.3
2,612,659	+		IAI47_12365	0.33	+0.9
2,612,659	+		IAI47_12365	0.33	+1.6
2,612,659	+		IAI47_12365	0.33	+0.6
2,612,660	-		IAI47_12365	0.33	+0.2
2,612,660	-		IAI47_12365	0.33	+0.2
2,612,660	-		IAI47_12365	0.33	+0.4
2,612,660	-		IAI47_12365	0.33	-2.2
2,612,705	+		IAI47_12365	0.41	-0.1
2,612,705	+		IAI47_12365	0.41	+1.0
2,612,705	+		IAI47_12365	0.41	-0.5
2,612,705	+		IAI47_12365	0.41	-0.3
2,612,705	+		IAI47_12365	0.41	+1.5
2,612,782	+		IAI47_12365	0.55	-0.3
2,612,809	-		IAI47_12365	0.60	-1.3
2,612,825	+		IAI47_12365	0.63	+1.2
2,612,826	-		IAI47_12365	0.63	-0.4
2,612,826	-		IAI47_12365	0.63	+2.0
2,612,999	+				+0.7
2,612,999	+				-1.8
2,613,000	-				-0.1
2,613,023	+				+0.1
2,613,024	-				-0.4
2,613,024	-				-0.7
2,613,024	-				-0.8
2,613,129	-		IAI47_12370	0.34	+0.9
2,613,137	+		IAI47_12370	0.37	-0.8
2,613,199	+		IAI47_12370	0.62	+0.7
2,613,200	-		IAI47_12370	0.62	+0.4
2,613,200	-		IAI47_12370	0.62	-2.0
2,613,200	-		IAI47_12370	0.62	+0.5
2,613,274	+				-2.4
2,613,275	-				+0.5
2,613,275	-				+2.2
2,613,296	+				+0.2
2,613,296	+				+1.2
2,613,296	+				-1.2
2,613,296	+				+0.2
2,613,296	+				+0.8
2,613,296	+				+0.2
2,613,297	-				+0.5
2,613,297	-				+0.4
2,613,297	-				-0.1
2,613,297	-				-1.0
2,613,297	-				+0.7
2,613,297	-				+1.2
2,613,297	-				-0.1
2,613,297	-				-1.2
2,613,297	-				-1.3
2,613,495	+		IAI47_12375	0.71	+0.4
2,613,496	-		IAI47_12375	0.71	-0.3
2,613,496	-		IAI47_12375	0.71	+0.2
2,613,555	+				-0.8
2,613,555	+				+0.7
2,613,555	+				+0.5
2,613,556	-				+0.2
2,613,556	-				-0.1
2,613,556	-				-0.3
2,613,559	+				+0.6
2,613,559	+				+0.6
2,613,560	-				+0.0
2,613,560	-				+2.2
2,613,585	+				-0.2
2,613,585	+				+0.0
2,613,586	-				+0.9
2,613,614	+				-0.2
2,613,615	-				-1.0
2,613,698	+		IAI47_12380	0.14	+1.2
2,613,709	+		IAI47_12380	0.16	+1.0
2,613,709	+		IAI47_12380	0.16	+0.8
2,613,721	+		IAI47_12380	0.17	-0.8
2,613,738	+		IAI47_12380	0.19	-1.3
2,613,755	-		IAI47_12380	0.21	-0.1
2,613,755	-		IAI47_12380	0.21	-2.2
2,613,763	+		IAI47_12380	0.22	+1.4
2,613,763	+		IAI47_12380	0.22	-0.9
2,613,763	+		IAI47_12380	0.22	-0.4
2,613,763	+		IAI47_12380	0.22	+1.2
2,613,763	+		IAI47_12380	0.22	+0.8
2,613,763	+		IAI47_12380	0.22	-0.4
2,613,763	+		IAI47_12380	0.22	+0.2
2,613,764	-		IAI47_12380	0.22	-2.2
2,613,764	-		IAI47_12380	0.22	+2.1
2,613,764	-		IAI47_12380	0.22	-0.8
2,613,764	-		IAI47_12380	0.22	+0.3
2,613,764	-		IAI47_12380	0.22	+0.6
2,613,764	-		IAI47_12380	0.22	-0.5
2,613,764	-		IAI47_12380	0.22	-0.7
2,613,764	-		IAI47_12380	0.22	-1.8
2,613,764	-		IAI47_12380	0.22	-1.7
2,613,764	-		IAI47_12380	0.22	-0.7
2,613,764	-		IAI47_12380	0.22	+0.4
2,613,764	-		IAI47_12380	0.22	-0.4
2,613,820	+		IAI47_12380	0.29	+0.9
2,613,892	+		IAI47_12380	0.38	+0.5
2,613,892	+		IAI47_12380	0.38	-1.1
2,613,893	-		IAI47_12380	0.39	-1.7
2,613,986	+		IAI47_12380	0.50	+0.8
2,613,986	+		IAI47_12380	0.50	+0.8
2,613,986	+		IAI47_12380	0.50	-0.1
2,613,986	+		IAI47_12380	0.50	-1.0
2,613,986	+		IAI47_12380	0.50	-0.6
2,613,986	+		IAI47_12380	0.50	+1.1
2,613,987	-		IAI47_12380	0.50	-0.6
2,613,987	-		IAI47_12380	0.50	+0.2
2,613,987	-		IAI47_12380	0.50	+0.5
2,613,987	-		IAI47_12380	0.50	+1.6
2,613,987	-		IAI47_12380	0.50	+0.9
2,613,987	-		IAI47_12380	0.50	-1.0
2,613,987	-		IAI47_12380	0.50	+0.2
2,613,987	-		IAI47_12380	0.50	-2.7
2,613,987	-		IAI47_12380	0.50	+0.2
2,613,989	-		IAI47_12380	0.51	+0.7
2,613,989	-		IAI47_12380	0.51	+0.2
2,614,017	-		IAI47_12380	0.54	-2.4
2,614,041	-		IAI47_12380	0.57	+1.0
2,614,060	-		IAI47_12380	0.59	-0.7
2,614,060	-		IAI47_12380	0.59	-1.2
2,614,081	+		IAI47_12380	0.62	+2.0
2,614,138	-		IAI47_12380	0.69	-0.4
2,614,144	-		IAI47_12380	0.70	+0.0
2,614,144	-		IAI47_12380	0.70	-0.8
2,614,187	-		IAI47_12380	0.75	-2.5
2,614,187	-		IAI47_12380	0.75	-0.8
2,614,187	-		IAI47_12380	0.75	-0.8
2,614,247	+		IAI47_12380	0.83	+0.6
2,614,247	+		IAI47_12380	0.83	+0.2
2,614,247	+		IAI47_12380	0.83	-0.7
2,614,248	-		IAI47_12380	0.83	+1.4
2,614,248	-		IAI47_12380	0.83	+0.4