Strain Fitness in Pantoea sp. MT58 around IAI47_12100

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
2,559,365	-				-2.6
2,560,122	-				+0.9
2,560,142	+				-0.2
2,560,143	-				+0.4
2,560,169	+				+0.5
2,560,229	+				-0.6
2,560,229	+				-1.0
2,560,260	-				-0.2
2,560,260	-				+1.8
2,560,260	-				-0.8
2,560,266	+				+0.0
2,560,266	+				+0.2
2,560,266	+				-1.4
2,560,266	+				+0.8
2,560,266	+				-2.3
2,560,266	+				+1.2
2,560,266	+				-0.6
2,560,267	-				+0.2
2,560,267	-				-0.4
2,560,284	+		IAI47_12100	0.13	-0.1
2,560,284	+		IAI47_12100	0.13	-0.6
2,560,284	+		IAI47_12100	0.13	-2.2
2,560,284	+		IAI47_12100	0.13	+0.9
2,560,284	+		IAI47_12100	0.13	-1.8
2,560,284	+		IAI47_12100	0.13	-0.5
2,560,285	-		IAI47_12100	0.13	-0.2
2,560,285	-		IAI47_12100	0.13	-2.6
2,560,285	-		IAI47_12100	0.13	+0.8
2,560,285	-		IAI47_12100	0.13	-1.1
2,560,285	-		IAI47_12100	0.13	-0.6
2,560,346	+		IAI47_12100	0.23	+0.7
2,560,347	-		IAI47_12100	0.23	+1.1
2,560,504	-		IAI47_12100	0.50	+0.8
2,560,512	+		IAI47_12100	0.51	-0.3
2,560,512	+		IAI47_12100	0.51	-0.1
2,560,519	+		IAI47_12100	0.53	+0.7
2,560,519	+		IAI47_12100	0.53	+1.8
2,560,519	+		IAI47_12100	0.53	+1.0
2,560,519	+		IAI47_12100	0.53	+0.6
2,560,520	-		IAI47_12100	0.53	+0.4
2,560,520	-		IAI47_12100	0.53	+0.8
2,560,520	-		IAI47_12100	0.53	+1.2
2,560,520	-		IAI47_12100	0.53	-0.8
2,560,601	+		IAI47_12100	0.66	-0.1
2,560,602	-		IAI47_12100	0.67	+2.0
2,560,624	+		IAI47_12100	0.70	+1.2
2,560,625	-		IAI47_12100	0.71	+0.4
2,560,625	-		IAI47_12100	0.71	-0.2
2,560,665	+		IAI47_12100	0.77	-1.2
2,560,722	+		IAI47_12100	0.87	+0.0
2,560,722	+		IAI47_12100	0.87	+0.9
2,560,722	+		IAI47_12100	0.87	-0.6
2,560,776	+				-0.4
2,560,788	-				+0.4
2,560,798	+				+1.8
2,560,883	+				-0.2
2,560,883	+				-1.0
2,560,883	+				-0.2
2,560,883	+				-1.0
2,560,884	-				+1.2
2,560,884	-				+1.0
2,560,884	-				+1.0
2,560,884	-				+2.2
2,560,987	-		IAI47_12105	0.18	+0.4
2,561,026	+		IAI47_12105	0.22	-0.0
2,561,026	+		IAI47_12105	0.22	-0.5
2,561,026	+		IAI47_12105	0.22	-1.1
2,561,026	+		IAI47_12105	0.22	-1.4
2,561,026	+		IAI47_12105	0.22	-1.6
2,561,026	+		IAI47_12105	0.22	-0.6
2,561,026	+		IAI47_12105	0.22	-0.3
2,561,027	-		IAI47_12105	0.23	-0.1
2,561,027	-		IAI47_12105	0.23	-0.2
2,561,027	-		IAI47_12105	0.23	+2.2
2,561,107	+		IAI47_12105	0.31	-0.1
2,561,108	-		IAI47_12105	0.31	-0.1
2,561,221	+		IAI47_12105	0.43	-0.2
2,561,241	+		IAI47_12105	0.45	+0.1
2,561,241	+		IAI47_12105	0.45	-0.1
2,561,241	+		IAI47_12105	0.45	-0.2
2,561,241	+		IAI47_12105	0.45	-2.3
2,561,320	+		IAI47_12105	0.53	-1.8
2,561,320	+		IAI47_12105	0.53	+2.2
2,561,320	+		IAI47_12105	0.53	-0.3
2,561,320	+		IAI47_12105	0.53	-1.7
2,561,387	+		IAI47_12105	0.60	+0.5
2,561,410	+		IAI47_12105	0.63	+0.9
2,561,411	-		IAI47_12105	0.63	-0.8
2,561,411	-		IAI47_12105	0.63	-0.3
2,561,411	-		IAI47_12105	0.63	+0.5
2,561,449	+		IAI47_12105	0.67	+1.8
2,561,449	+		IAI47_12105	0.67	-0.4
2,561,450	-		IAI47_12105	0.67	+1.2
2,561,450	-		IAI47_12105	0.67	-0.1
2,561,450	-		IAI47_12105	0.67	+0.3
2,561,450	-		IAI47_12105	0.67	-2.2
2,561,570	+		IAI47_12105	0.79	-0.5
2,561,571	-		IAI47_12105	0.79	-1.4
2,561,595	+		IAI47_12105	0.82	-0.5
2,561,595	+		IAI47_12105	0.82	-0.6
2,561,595	+		IAI47_12105	0.82	-0.1
2,561,596	-		IAI47_12105	0.82	+0.3
2,561,596	-		IAI47_12105	0.82	+0.2
2,561,642	+		IAI47_12105	0.87	+0.0
2,561,642	+		IAI47_12105	0.87	-0.4
2,561,643	-		IAI47_12105	0.87	+0.8
2,561,643	-		IAI47_12105	0.87	+0.2
2,561,643	-		IAI47_12105	0.87	+1.3
2,561,643	-		IAI47_12105	0.87	+0.3
2,561,652	+		IAI47_12105	0.88	+0.7
2,561,653	-		IAI47_12105	0.88	+0.9
2,561,677	+				-0.2
2,561,677	+				+0.4
2,561,677	+				+2.2
2,561,678	-				+0.2
2,561,678	-				+0.6
2,561,698	+				+0.5
2,561,698	+				+0.9
2,561,699	-				-0.5
2,561,745	-				+1.0
2,561,745	-				+1.0
2,561,779	+				+0.2
2,561,780	-				-0.8
2,561,780	-				+0.4
2,561,783	+				-0.5
2,561,783	+				-0.6
2,561,783	+				-0.2
2,561,784	-				-0.6
2,561,784	-				+0.7
2,561,784	-				+0.1
2,561,784	-				+0.2