Strain Fitness in Pantoea sp. MT58 around IAI47_06395

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
1,301,795	+		IAI47_06390	0.21	+0.2
1,301,819	+		IAI47_06390	0.24	-1.8
1,301,820	-		IAI47_06390	0.24	-1.8
1,301,831	+		IAI47_06390	0.25	-2.6
1,301,885	+		IAI47_06390	0.30	-1.4
1,301,970	+		IAI47_06390	0.39	-3.1
1,302,054	+		IAI47_06390	0.48	-1.4
1,302,188	+				-0.8
1,302,313	-		IAI47_06390	0.74	-2.1
1,302,313	-		IAI47_06390	0.74	-2.1
1,302,422	+		IAI47_06390	0.85	-1.4
1,302,423	-		IAI47_06390	0.85	-0.8
1,302,423	-		IAI47_06390	0.85	-3.0
1,302,592	+				-0.8
1,302,601	-				-0.8
1,302,625	+				-1.4
1,302,626	-				+0.2
1,302,799	+		IAI47_06395	0.41	-0.8
1,302,971	+		IAI47_06395	0.72	-1.8
1,302,971	+		IAI47_06395	0.72	+0.2
1,302,971	+		IAI47_06395	0.72	-1.4
1,303,043	-				-1.4
1,303,063	+		IAI47_06395	0.89	-1.4
1,303,093	+				-2.4
1,303,110	+				+0.6
1,303,110	+				-0.5
1,303,110	+				-2.4
1,303,110	+				-0.2
1,303,110	+				+1.2
1,303,113	+				-1.0
1,303,113	+				+0.9
1,303,113	+				-0.3
1,303,118	+				+0.9
1,303,146	+				-2.1
1,303,275	+		IAI47_06400	0.26	-2.1
1,303,276	-		IAI47_06400	0.26	-2.8
1,303,343	+		IAI47_06400	0.38	-1.8
1,303,456	-		IAI47_06400	0.59	-1.4
1,303,539	+		IAI47_06400	0.74	-1.8
1,303,539	+		IAI47_06400	0.74	-1.4
1,303,540	-		IAI47_06400	0.74	-1.4
1,303,565	+		IAI47_06400	0.79	-2.6
1,303,566	-		IAI47_06400	0.79	-1.4
1,303,643	+				-1.4
1,303,689	+				-2.6
1,303,750	-		IAI47_06405	0.23	-1.4
1,303,809	+		IAI47_06405	0.43	-1.4
1,303,809	+		IAI47_06405	0.43	-2.4
1,303,809	+		IAI47_06405	0.43	+0.2
1,303,832	+		IAI47_06405	0.50	-0.8
1,303,862	+		IAI47_06405	0.60	-1.4
1,303,862	+		IAI47_06405	0.60	-3.2
1,303,862	+		IAI47_06405	0.60	-0.8
1,303,862	+		IAI47_06405	0.60	-0.8
1,303,863	-		IAI47_06405	0.61	-2.4
1,303,863	-		IAI47_06405	0.61	-1.4
1,303,863	-		IAI47_06405	0.61	+0.2
1,303,863	-		IAI47_06405	0.61	-2.1
1,303,863	-		IAI47_06405	0.61	-1.8
1,303,863	-		IAI47_06405	0.61	-1.4
1,303,928	+		IAI47_06405	0.82	-0.8
1,303,957	+				+0.2
1,303,957	+				-1.7
1,303,959	-				-2.4
1,303,995	-				-0.8
1,303,995	-				+0.2
1,304,030	+				-1.4
1,304,075	+				-0.8
1,304,076	-				-3.0
1,304,079	+				-2.1
1,304,079	+				-1.4
1,304,080	-				-0.8
1,304,109	+				-1.8