Strain Fitness in Pantoea sp. MT58 around IAI47_01920

Experiment: Ying_Others16 rep B; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_01910 and IAI47_01915 overlap by 17 nucleotidesIAI47_01915 and IAI47_01920 are separated by 16 nucleotidesIAI47_01920 and IAI47_01925 are separated by 404 nucleotides IAI47_01910: IAI47_01910 - ribulose-phosphate 3-epimerase, at 418,493 to 419,176 _01910 IAI47_01915: IAI47_01915 - phosphoglycolate phosphatase, at 419,160 to 419,837 _01915 IAI47_01920: IAI47_01920 - tryptophan--tRNA ligase, at 419,854 to 420,855 _01920 IAI47_01925: IAI47_01925 - cytosine deaminase, at 421,260 to 422,537 _01925 Position (kb) 419 420 421Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 419.324 kb on + strand, within IAI47_01915at 419.438 kb on + strand, within IAI47_01915at 419.438 kb on + strand, within IAI47_01915at 419.438 kb on + strand, within IAI47_01915at 419.458 kb on + strand, within IAI47_01915at 419.479 kb on + strand, within IAI47_01915at 419.479 kb on + strand, within IAI47_01915at 419.582 kb on + strand, within IAI47_01915at 419.633 kb on + strand, within IAI47_01915at 419.633 kb on + strand, within IAI47_01915at 419.656 kb on + strand, within IAI47_01915at 419.656 kb on + strand, within IAI47_01915at 419.699 kb on + strand, within IAI47_01915at 419.699 kb on + strand, within IAI47_01915at 419.738 kb on + strand, within IAI47_01915at 419.751 kb on + strand, within IAI47_01915at 419.751 kb on + strand, within IAI47_01915at 419.753 kb on + strand, within IAI47_01915at 419.753 kb on + strand, within IAI47_01915at 419.753 kb on + strand, within IAI47_01915at 419.753 kb on + strand, within IAI47_01915at 419.753 kb on + strand, within IAI47_01915at 419.791 kb on + strandat 419.835 kb on + strandat 419.835 kb on + strandat 419.835 kb on + strandat 419.835 kb on + strandat 419.839 kb on + strandat 420.853 kb on + strandat 420.854 kb on - strandat 420.854 kb on - strandat 420.902 kb on + strandat 421.069 kb on - strandat 421.073 kb on + strandat 421.073 kb on + strandat 421.074 kb on - strandat 421.094 kb on + strandat 421.094 kb on + strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.095 kb on - strandat 421.100 kb on + strandat 421.100 kb on + strandat 421.101 kb on - strandat 421.102 kb on + strandat 421.102 kb on + strandat 421.103 kb on - strandat 421.103 kb on - strandat 421.103 kb on - strandat 421.119 kb on + strandat 421.119 kb on + strandat 421.119 kb on + strandat 421.120 kb on - strandat 421.122 kb on - strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.123 kb on + strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.124 kb on - strandat 421.138 kb on - strandat 421.187 kb on - strandat 421.187 kb on - strandat 421.209 kb on - strandat 421.209 kb on - strandat 421.226 kb on + strandat 421.227 kb on - strandat 421.283 kb on + strandat 421.283 kb on + strandat 421.294 kb on + strandat 421.411 kb on + strand, within IAI47_01925at 421.411 kb on + strand, within IAI47_01925at 421.427 kb on + strand, within IAI47_01925at 421.428 kb on - strand, within IAI47_01925at 421.439 kb on + strand, within IAI47_01925at 421.439 kb on + strand, within IAI47_01925at 421.439 kb on + strand, within IAI47_01925at 421.439 kb on + strand, within IAI47_01925at 421.439 kb on + strand, within IAI47_01925at 421.439 kb on + strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.440 kb on - strand, within IAI47_01925at 421.556 kb on + strand, within IAI47_01925at 421.556 kb on + strand, within IAI47_01925at 421.557 kb on - strand, within IAI47_01925at 421.557 kb on - strand, within IAI47_01925at 421.602 kb on - strand, within IAI47_01925at 421.602 kb on - strand, within IAI47_01925at 421.830 kb on + strand, within IAI47_01925at 421.850 kb on + strand, within IAI47_01925at 421.851 kb on - strand, within IAI47_01925at 421.851 kb on - strand, within IAI47_01925at 421.851 kb on - strand, within IAI47_01925at 421.851 kb on - strand, within IAI47_01925at 421.851 kb on - strand, within IAI47_01925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3
remove
419,324 + IAI47_01915 0.24 +0.2
419,438 + IAI47_01915 0.41 -0.7
419,438 + IAI47_01915 0.41 -1.4
419,438 + IAI47_01915 0.41 +0.8
419,458 + IAI47_01915 0.44 -1.4
419,479 + IAI47_01915 0.47 -2.0
419,479 + IAI47_01915 0.47 -1.9
419,582 + IAI47_01915 0.62 -0.8
419,633 + IAI47_01915 0.70 -0.6
419,633 + IAI47_01915 0.70 -2.6
419,656 + IAI47_01915 0.73 -3.0
419,656 + IAI47_01915 0.73 -3.1
419,699 + IAI47_01915 0.79 +1.2
419,699 + IAI47_01915 0.79 -1.6
419,738 + IAI47_01915 0.85 -1.2
419,751 + IAI47_01915 0.87 -1.6
419,751 + IAI47_01915 0.87 -1.4
419,753 + IAI47_01915 0.87 -2.6
419,753 + IAI47_01915 0.87 -0.2
419,753 + IAI47_01915 0.87 -3.0
419,753 + IAI47_01915 0.87 -2.0
419,753 + IAI47_01915 0.87 -1.6
419,791 + -1.2
419,835 + -1.8
419,835 + -0.5
419,835 + +0.1
419,835 + -0.1
419,839 + +2.5
420,853 + -0.6
420,854 - -0.6
420,854 - -1.1
420,902 + +2.8
421,069 - +0.6
421,073 + -0.5
421,073 + +1.6
421,074 - +0.6
421,094 + +1.8
421,094 + +0.2
421,095 - +0.8
421,095 - +0.2
421,095 - -0.8
421,100 + -0.0
421,100 + +1.4
421,101 - -0.4
421,102 + +1.2
421,102 + +0.0
421,103 - -0.4
421,103 - -0.2
421,103 - +1.2
421,119 + -1.3
421,119 + +0.6
421,119 + -2.4
421,120 - +0.1
421,122 - +2.0
421,123 + +0.8
421,123 + +0.1
421,123 + +2.4
421,123 + +0.6
421,123 + +0.2
421,123 + +0.9
421,123 + -0.2
421,123 + +0.3
421,124 - -0.7
421,124 - -0.8
421,124 - +0.2
421,124 - +0.3
421,124 - -1.5
421,124 - -0.2
421,124 - -1.8
421,124 - +0.2
421,124 - -0.5
421,124 - -1.7
421,124 - -0.0
421,138 - +1.5
421,187 - -0.1
421,187 - +0.5
421,209 - -0.1
421,209 - -1.9
421,226 + +0.6
421,227 - +0.4
421,283 + +0.0
421,283 + -0.3
421,294 + -0.4
421,411 + IAI47_01925 0.12 +0.9
421,411 + IAI47_01925 0.12 -0.1
421,427 + IAI47_01925 0.13 +0.5
421,428 - IAI47_01925 0.13 +1.7
421,439 + IAI47_01925 0.14 -0.7
421,439 + IAI47_01925 0.14 +0.4
421,439 + IAI47_01925 0.14 -1.4
421,439 + IAI47_01925 0.14 -0.8
421,439 + IAI47_01925 0.14 -0.1
421,439 + IAI47_01925 0.14 -0.3
421,440 - IAI47_01925 0.14 -1.1
421,440 - IAI47_01925 0.14 +0.4
421,440 - IAI47_01925 0.14 -1.1
421,440 - IAI47_01925 0.14 +1.0
421,440 - IAI47_01925 0.14 -0.8
421,440 - IAI47_01925 0.14 +1.2
421,440 - IAI47_01925 0.14 -0.7
421,440 - IAI47_01925 0.14 +0.1
421,440 - IAI47_01925 0.14 +0.7
421,440 - IAI47_01925 0.14 +1.4
421,440 - IAI47_01925 0.14 +0.8
421,440 - IAI47_01925 0.14 +0.0
421,556 + IAI47_01925 0.23 +0.1
421,556 + IAI47_01925 0.23 -1.4
421,557 - IAI47_01925 0.23 +0.3
421,557 - IAI47_01925 0.23 -0.4
421,602 - IAI47_01925 0.27 +0.6
421,602 - IAI47_01925 0.27 -0.8
421,830 + IAI47_01925 0.45 -1.4
421,850 + IAI47_01925 0.46 +2.4
421,851 - IAI47_01925 0.46 +2.2
421,851 - IAI47_01925 0.46 -0.5
421,851 - IAI47_01925 0.46 +1.1
421,851 - IAI47_01925 0.46 -0.1
421,851 - IAI47_01925 0.46 +1.4

Or see this region's nucleotide sequence