Strain Fitness in Pantoea sp. MT58 around IAI47_00485

Experiment: Ying_Others16 rep B; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 3
107,987	-		IAI47_00475	0.46	+1.4
107,987	-		IAI47_00475	0.46	+0.2
107,987	-		IAI47_00475	0.46	+0.1
108,001	+		IAI47_00475	0.48	+0.2
108,001	+		IAI47_00475	0.48	-0.8
108,001	+		IAI47_00475	0.48	-0.8
108,061	+		IAI47_00475	0.55	+0.4
108,061	+		IAI47_00475	0.55	-0.5
108,061	+		IAI47_00475	0.55	-0.7
108,062	-		IAI47_00475	0.55	-0.9
108,062	-		IAI47_00475	0.55	-1.1
108,062	-		IAI47_00475	0.55	-0.3
108,084	+		IAI47_00475	0.57	+0.1
108,084	+		IAI47_00475	0.57	+0.2
108,084	+		IAI47_00475	0.57	+0.5
108,084	+		IAI47_00475	0.57	+0.1
108,085	-		IAI47_00475	0.57	-1.8
108,085	-		IAI47_00475	0.57	-1.0
108,085	-		IAI47_00475	0.57	-1.3
108,169	+		IAI47_00475	0.67	-0.3
108,169	+		IAI47_00475	0.67	-0.3
108,169	+		IAI47_00475	0.67	-1.2
108,170	-		IAI47_00475	0.67	-0.0
108,170	-		IAI47_00475	0.67	-0.5
108,170	-		IAI47_00475	0.67	+0.2
108,271	+		IAI47_00475	0.79	+1.2
108,271	+		IAI47_00475	0.79	+0.7
108,271	+		IAI47_00475	0.79	+0.1
108,271	+		IAI47_00475	0.79	-0.3
108,271	+		IAI47_00475	0.79	+1.0
108,271	+		IAI47_00475	0.79	+0.7
108,271	+		IAI47_00475	0.79	-0.8
108,271	+		IAI47_00475	0.79	+1.0
108,272	-		IAI47_00475	0.79	-0.1
108,272	-		IAI47_00475	0.79	+0.6
108,272	-		IAI47_00475	0.79	+0.2
108,272	-		IAI47_00475	0.79	+0.0
108,276	+		IAI47_00475	0.79	+0.2
108,276	+		IAI47_00475	0.79	-1.3
108,276	+		IAI47_00475	0.79	+1.6
108,276	+		IAI47_00475	0.79	-0.2
108,276	+		IAI47_00475	0.79	+0.1
108,276	+		IAI47_00475	0.79	+0.2
108,276	+		IAI47_00475	0.79	-0.3
108,276	+		IAI47_00475	0.79	+0.6
108,276	+		IAI47_00475	0.79	+0.1
108,276	+		IAI47_00475	0.79	+0.8
108,277	-		IAI47_00475	0.79	-0.1
108,277	-		IAI47_00475	0.79	-0.8
108,277	-		IAI47_00475	0.79	-1.2
108,277	-		IAI47_00475	0.79	-2.3
108,277	-		IAI47_00475	0.79	+0.2
108,277	-		IAI47_00475	0.79	+0.2
108,277	-		IAI47_00475	0.79	+0.2
108,277	-		IAI47_00475	0.79	-0.4
108,279	+		IAI47_00475	0.80	+0.8
108,279	+		IAI47_00475	0.80	-0.2
108,279	+		IAI47_00475	0.80	+0.6
108,279	+		IAI47_00475	0.80	+0.2
108,279	+		IAI47_00475	0.80	+1.0
108,279	+		IAI47_00475	0.80	-0.2
108,279	+		IAI47_00475	0.80	+0.1
108,279	+		IAI47_00475	0.80	-0.4
108,279	+		IAI47_00475	0.80	-0.0
108,279	+		IAI47_00475	0.80	+0.8
108,279	+		IAI47_00475	0.80	+0.2
108,279	+		IAI47_00475	0.80	+2.3
108,279	+		IAI47_00475	0.80	-1.8
108,280	-		IAI47_00475	0.80	-0.2
108,280	-		IAI47_00475	0.80	-1.1
108,280	-		IAI47_00475	0.80	-1.6
108,280	-		IAI47_00475	0.80	-0.3
108,280	-		IAI47_00475	0.80	-0.8
108,280	-		IAI47_00475	0.80	-2.1
108,280	-		IAI47_00475	0.80	-0.6
108,280	-		IAI47_00475	0.80	-0.6
108,280	-		IAI47_00475	0.80	-2.1
108,280	-		IAI47_00475	0.80	-1.2
108,280	-		IAI47_00475	0.80	-1.6
108,280	-		IAI47_00475	0.80	-0.8
108,280	-		IAI47_00475	0.80	-0.8
108,280	-		IAI47_00475	0.80	+0.1
108,280	-		IAI47_00475	0.80	-1.6
108,280	-		IAI47_00475	0.80	-1.3
108,280	-		IAI47_00475	0.80	-0.3
108,292	+		IAI47_00475	0.81	+0.5
108,292	+		IAI47_00475	0.81	+1.2
108,292	+		IAI47_00475	0.81	+2.1
108,293	-		IAI47_00475	0.81	+0.9
108,293	-		IAI47_00475	0.81	-0.1
108,293	-		IAI47_00475	0.81	-0.8
108,293	-		IAI47_00475	0.81	+0.7
108,304	+		IAI47_00475	0.82	-0.2
108,304	+		IAI47_00475	0.82	+1.3
108,305	-		IAI47_00475	0.83	-0.5
108,305	-		IAI47_00475	0.83	-1.6
108,305	-		IAI47_00475	0.83	-0.3
108,305	-		IAI47_00475	0.83	-1.2
108,312	-		IAI47_00475	0.83	-2.8
108,346	+		IAI47_00475	0.87	+1.2
108,347	-		IAI47_00475	0.87	-1.0
108,360	+		IAI47_00475	0.89	+1.3
108,360	+		IAI47_00475	0.89	+1.0
108,360	+		IAI47_00475	0.89	+1.3
108,360	+		IAI47_00475	0.89	+0.8
108,360	+		IAI47_00475	0.89	+0.9
108,360	+		IAI47_00475	0.89	+0.7
108,360	+		IAI47_00475	0.89	+2.9
108,360	+		IAI47_00475	0.89	+1.1
108,360	+		IAI47_00475	0.89	+2.5
108,361	-		IAI47_00475	0.89	-0.2
108,361	-		IAI47_00475	0.89	-0.2
108,361	-		IAI47_00475	0.89	-1.1
108,361	-		IAI47_00475	0.89	-0.8
108,383	+				+0.5
108,384	-				-1.3
108,384	-				-1.0
108,384	-				-0.7
108,384	-				-0.4
108,532	+		IAI47_00480	0.18	-0.0
108,533	-		IAI47_00480	0.18	-2.8
108,550	+		IAI47_00480	0.22	+0.5
108,598	+		IAI47_00480	0.33	+1.1
108,598	+		IAI47_00480	0.33	+0.3
108,598	+		IAI47_00480	0.33	+0.1
108,599	-		IAI47_00480	0.33	-1.3
108,618	-		IAI47_00480	0.38	-2.1
108,689	+		IAI47_00480	0.54	-0.1
108,690	-		IAI47_00480	0.54	-2.1
108,690	-		IAI47_00480	0.54	-0.3
108,768	+		IAI47_00480	0.72	+1.8
108,768	+		IAI47_00480	0.72	+0.2
108,769	-		IAI47_00480	0.72	+0.6
108,769	-		IAI47_00480	0.72	-1.1
108,769	-		IAI47_00480	0.72	-1.6
108,774	+		IAI47_00480	0.73	+0.6
108,774	+		IAI47_00480	0.73	+1.0
108,774	+		IAI47_00480	0.73	+0.7
108,775	-		IAI47_00480	0.74	-1.3
108,775	-		IAI47_00480	0.74	-0.8
108,775	-		IAI47_00480	0.74	-2.1
108,806	+		IAI47_00480	0.81	+1.4
108,807	-		IAI47_00480	0.81	-0.2
108,807	-		IAI47_00480	0.81	+0.2
108,807	-		IAI47_00480	0.81	-1.9
108,807	-		IAI47_00480	0.81	-0.3
108,807	-		IAI47_00480	0.81	-1.8
108,807	-		IAI47_00480	0.81	+2.2
108,809	+		IAI47_00480	0.81	+1.6
108,810	-		IAI47_00480	0.82	-0.8
108,836	+		IAI47_00480	0.87	+2.7
108,836	+		IAI47_00480	0.87	+0.5
108,836	+		IAI47_00480	0.87	+0.2
108,836	+		IAI47_00480	0.87	+0.8
108,836	+		IAI47_00480	0.87	+0.9
108,836	+		IAI47_00480	0.87	+0.4
108,837	-		IAI47_00480	0.88	-1.0
108,837	-		IAI47_00480	0.88	-1.8
108,837	-		IAI47_00480	0.88	-0.6
108,837	-		IAI47_00480	0.88	-0.8
108,837	-		IAI47_00480	0.88	-0.6
108,837	-		IAI47_00480	0.88	-1.3
108,837	-		IAI47_00480	0.88	-0.0
108,837	-		IAI47_00480	0.88	-1.3
108,837	-		IAI47_00480	0.88	+0.2
108,837	-		IAI47_00480	0.88	-0.8
108,837	-		IAI47_00480	0.88	+1.2
108,837	-		IAI47_00480	0.88	-2.3
108,922	+				+0.2
108,922	+				+0.5
108,922	+				+0.8
108,922	+				+2.9
108,922	+				+0.5
108,922	+				+0.5
108,922	+				+0.5
108,922	+				+1.2
108,922	+				+0.3
108,922	+				+0.7
108,922	+				+0.7
108,922	+				+1.6
108,923	-				+1.0
108,923	-				+1.0
108,923	-				-0.8
108,923	-				-0.2
108,923	-				-1.1
108,923	-				-0.2
108,923	-				-2.3
108,923	-				-1.1
108,923	-				+1.8
108,944	+				-1.7
108,944	+				-2.6
108,944	+				-1.3
108,944	+				-0.3
108,944	+				-0.3
108,944	+				-1.2
108,944	+				-0.1
108,944	+				-1.8
108,944	+				-2.4
108,944	+				-0.0
108,944	+				-0.8
108,944	+				-1.3
108,944	+				-0.4
108,944	+				-1.8
108,944	+				-1.0
108,944	+				-1.8
108,944	+				-1.9
108,945	-				-0.8
108,945	-				-2.3
108,945	-				-1.6
108,945	-				-1.2
108,945	-				-2.1
108,945	-				-1.2
108,945	-				-1.5
108,945	-				-1.2
108,945	-				-0.1
108,945	-				-0.3
108,945	-				-1.3
108,945	-				-1.6
108,948	+				+0.3
108,950	+				-2.9
108,950	+				-1.9
108,950	+				-1.6
108,950	+				-1.6
108,951	-				-1.4
108,951	-				-1.0
108,951	-				-3.1
108,951	-				-2.1
108,951	-				-1.8
108,988	+				-2.1
108,988	+				-0.2
108,988	+				-1.5
108,988	+				-1.3
108,989	-				-2.2
108,989	-				-0.8
108,989	-				-0.8
108,991	-				-1.1
108,992	+				+0.9
108,992	+				+1.2
108,992	+				+0.6
108,992	+				-0.0
108,992	+				+0.2
108,992	+				+0.6
108,992	+				+1.8
108,992	+				-1.4
108,992	+				-0.8
108,992	+				-0.6
108,992	+				-1.0
108,992	+				-1.9
108,992	+				+0.2
108,993	-				-0.8
108,993	-				-0.8
108,993	-				-0.0
108,993	-				-0.6
108,993	-				-0.8
108,993	-				-0.9
108,993	-				-1.7
108,993	-				-1.0
108,993	-				-2.7
108,993	-				-1.3
108,993	-				-1.1
108,993	-				-1.3
108,993	-				+0.7
108,993	-				+0.0
108,995	+				-1.1
108,995	+				-0.5
108,995	+				-2.1
108,996	-				-1.3
108,996	-				-0.2
108,996	-				-0.9
109,017	+				-0.6
109,017	+				-0.2
109,017	+				-2.1
109,017	+				+0.2
109,017	+				-0.5
109,017	+				-1.5
109,017	+				-0.8
109,017	+				-1.9
109,018	-				-0.6
109,018	-				-1.6
109,018	-				+0.0
109,018	-				-0.0
109,018	-				-0.8
109,018	-				-2.7
109,021	+				-0.8
109,021	+				-0.7
109,021	+				+0.2
109,021	+				-1.6
109,021	+				-1.1
109,021	+				+0.2
109,022	-				-0.8
109,022	-				-0.8
109,022	-				-2.9
109,022	-				-1.3
109,022	-				-1.2
109,130	+		IAI47_00485	0.19	-0.5
109,130	+		IAI47_00485	0.19	-1.1
109,130	+		IAI47_00485	0.19	-0.9
109,131	-		IAI47_00485	0.19	+0.7
109,134	+		IAI47_00485	0.20	-0.3
109,135	+		IAI47_00485	0.20	+0.2
109,135	+		IAI47_00485	0.20	+1.2
109,135	+		IAI47_00485	0.20	-0.3
109,135	+		IAI47_00485	0.20	-1.6
109,136	-		IAI47_00485	0.20	+0.2
109,136	-		IAI47_00485	0.20	-0.6
109,136	-		IAI47_00485	0.20	-1.0
109,136	-		IAI47_00485	0.20	-2.1
109,209	+		IAI47_00485	0.28	-1.3
109,234	-		IAI47_00485	0.30	-0.3
109,252	+		IAI47_00485	0.32	-1.8
109,252	+		IAI47_00485	0.32	-0.2
109,252	+		IAI47_00485	0.32	-1.3
109,253	-		IAI47_00485	0.32	+1.2
109,253	-		IAI47_00485	0.32	-1.3
109,268	-		IAI47_00485	0.34	-1.2
109,300	+		IAI47_00485	0.37	+1.0
109,310	+		IAI47_00485	0.38	-0.0
109,310	+		IAI47_00485	0.38	-0.8
109,310	+		IAI47_00485	0.38	-0.1
109,330	+		IAI47_00485	0.40	-0.9
109,330	+		IAI47_00485	0.40	-1.0
109,331	-		IAI47_00485	0.41	-0.6
109,385	-		IAI47_00485	0.46	-0.6
109,396	+		IAI47_00485	0.47	-0.6
109,396	+		IAI47_00485	0.47	-3.2
109,397	-		IAI47_00485	0.47	+1.0
109,442	+		IAI47_00485	0.52	+2.0
109,442	+		IAI47_00485	0.52	-2.5
109,442	+		IAI47_00485	0.52	-1.1
109,443	-		IAI47_00485	0.52	-1.6
109,443	-		IAI47_00485	0.52	-1.3
109,443	-		IAI47_00485	0.52	-1.0
109,443	-		IAI47_00485	0.52	-3.1
109,443	-		IAI47_00485	0.52	-1.3
109,450	+		IAI47_00485	0.53	-1.3
109,450	+		IAI47_00485	0.53	+0.0
109,450	+		IAI47_00485	0.53	-0.6
109,450	+		IAI47_00485	0.53	+0.2
109,450	+		IAI47_00485	0.53	-1.1
109,451	-		IAI47_00485	0.53	+1.2
109,451	-		IAI47_00485	0.53	-0.6
109,451	-		IAI47_00485	0.53	+0.8
109,451	-		IAI47_00485	0.53	-0.7
109,451	-		IAI47_00485	0.53	-0.8
109,481	-		IAI47_00485	0.56	-1.1
109,481	-		IAI47_00485	0.56	-0.7
109,611	+		IAI47_00485	0.70	-1.2
109,612	-		IAI47_00485	0.70	+0.8
109,612	-		IAI47_00485	0.70	-1.3
109,645	+		IAI47_00485	0.74	-0.8
109,645	+		IAI47_00485	0.74	+0.2
109,645	+		IAI47_00485	0.74	-2.1
109,645	+		IAI47_00485	0.74	-0.8
109,645	+		IAI47_00485	0.74	-1.3
109,645	+		IAI47_00485	0.74	-1.0
109,646	-		IAI47_00485	0.74	-2.1
109,670	+		IAI47_00485	0.76	-2.1
109,684	+		IAI47_00485	0.78	-1.9
109,722	+		IAI47_00485	0.82	+0.8
109,722	+		IAI47_00485	0.82	+0.2
109,723	-		IAI47_00485	0.82	-0.0
109,756	+		IAI47_00485	0.85	-0.8
109,756	+		IAI47_00485	0.85	+0.8
109,757	-		IAI47_00485	0.85	+0.8
109,757	-		IAI47_00485	0.85	+1.8
109,757	-		IAI47_00485	0.85	-2.3
109,826	+				-0.8
109,826	+				-1.8
109,826	+				-0.8
109,826	+				-0.2
109,826	+				-1.9
109,826	+				-0.0
109,826	+				-1.5
109,826	+				+1.2
109,826	+				+1.2
109,826	+				-0.8
109,826	+				-0.5
109,826	+				-0.8
109,826	+				-0.8
109,827	-				-0.1
109,827	-				-0.3
109,827	-				-1.5
109,827	-				-1.3
109,827	-				+0.1
109,827	-				+0.7
109,827	-				-1.5
109,827	-				-2.2
109,827	-				-1.9
109,827	-				-1.7
109,827	-				-2.8
109,828	+				-1.1
109,828	+				-1.1
109,828	+				-1.0
109,828	+				-1.3
109,828	+				-1.6
109,828	+				-1.2
109,828	+				-1.3
109,828	+				-0.8
109,828	+				-1.0
109,829	-				-0.8
109,829	-				-1.1
109,829	-				-0.2
109,829	-				-0.5
109,829	-				-0.9
109,885	+				-0.2
109,885	+				-1.3
109,885	+				-2.3
109,885	+				+0.8
109,885	+				-0.9
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