Experiment: Ying_Others16 rep B; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00435 and IAI47_00440 are separated by 551 nucleotides IAI47_00440 and IAI47_00445 are separated by 233 nucleotides
IAI47_00435: IAI47_00435 - YihA family ribosome biogenesis GTP-binding protein, at 97,138 to 97,773
_00435
IAI47_00440: IAI47_00440 - Der GTPase-activating protein YihI, at 98,325 to 98,849
_00440
IAI47_00445: IAI47_00445 - oxygen-independent coproporphyrinogen III oxidase, at 99,083 to 100,456
_00445
Position (kb) 98
99 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 97.797 kb on - strand at 97.797 kb on - strand at 97.815 kb on - strand at 97.816 kb on + strand at 97.816 kb on + strand at 97.817 kb on - strand at 97.817 kb on - strand at 97.817 kb on - strand at 97.817 kb on - strand at 97.854 kb on + strand at 97.854 kb on + strand at 97.867 kb on - strand at 97.881 kb on + strand at 97.882 kb on - strand at 97.882 kb on - strand at 97.895 kb on - strand at 97.915 kb on + strand at 97.916 kb on - strand at 97.942 kb on - strand at 97.949 kb on + strand at 97.950 kb on - strand at 97.950 kb on - strand at 97.975 kb on + strand at 97.979 kb on + strand at 97.980 kb on - strand at 97.980 kb on - strand at 97.980 kb on - strand at 97.980 kb on - strand at 97.980 kb on - strand at 97.980 kb on - strand at 97.980 kb on - strand at 97.980 kb on - strand at 98.017 kb on + strand at 98.018 kb on - strand at 98.018 kb on - strand at 98.022 kb on + strand at 98.023 kb on - strand at 98.023 kb on - strand at 98.023 kb on - strand at 98.023 kb on - strand at 98.023 kb on - strand at 98.070 kb on - strand at 98.080 kb on + strand at 98.081 kb on - strand at 98.081 kb on - strand at 98.081 kb on - strand at 98.081 kb on - strand at 98.113 kb on - strand at 98.175 kb on + strand at 98.175 kb on + strand at 98.175 kb on + strand at 98.175 kb on + strand at 98.175 kb on + strand at 98.175 kb on + strand at 98.176 kb on - strand at 98.176 kb on - strand at 98.176 kb on - strand at 98.176 kb on - strand at 98.176 kb on - strand at 98.176 kb on - strand at 98.193 kb on + strand at 98.194 kb on - strand at 98.194 kb on - strand at 98.194 kb on - strand at 98.211 kb on + strand at 98.211 kb on + strand at 98.211 kb on + strand at 98.211 kb on + strand at 98.211 kb on + strand at 98.211 kb on + strand at 98.212 kb on - strand at 98.212 kb on - strand at 98.212 kb on - strand at 98.212 kb on - strand at 98.219 kb on + strand at 98.226 kb on + strand at 98.226 kb on + strand at 98.226 kb on + strand at 98.227 kb on - strand at 98.227 kb on - strand at 98.274 kb on + strand at 98.292 kb on + strand at 98.292 kb on + strand at 98.292 kb on + strand at 98.292 kb on + strand at 98.292 kb on + strand at 98.293 kb on - strand at 98.293 kb on - strand at 98.294 kb on + strand at 98.295 kb on - strand at 98.295 kb on - strand at 98.321 kb on + strand at 98.321 kb on + strand at 98.321 kb on + strand at 98.321 kb on + strand at 98.322 kb on - strand at 98.322 kb on - strand at 98.322 kb on - strand at 98.322 kb on - strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.324 kb on + strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.325 kb on - strand at 98.392 kb on - strand, within IAI47_00440 at 98.394 kb on - strand, within IAI47_00440 at 98.394 kb on - strand, within IAI47_00440 at 98.394 kb on - strand, within IAI47_00440 at 98.426 kb on + strand, within IAI47_00440 at 98.426 kb on + strand, within IAI47_00440 at 98.426 kb on + strand, within IAI47_00440 at 98.427 kb on - strand, within IAI47_00440 at 98.463 kb on - strand, within IAI47_00440 at 98.463 kb on - strand, within IAI47_00440 at 98.463 kb on - strand, within IAI47_00440 at 98.501 kb on + strand, within IAI47_00440 at 98.501 kb on + strand, within IAI47_00440 at 98.502 kb on - strand, within IAI47_00440 at 98.502 kb on - strand, within IAI47_00440 at 98.502 kb on - strand, within IAI47_00440 at 98.502 kb on - strand, within IAI47_00440 at 98.504 kb on + strand, within IAI47_00440 at 98.504 kb on + strand, within IAI47_00440 at 98.504 kb on + strand, within IAI47_00440 at 98.505 kb on - strand, within IAI47_00440 at 98.505 kb on - strand, within IAI47_00440 at 98.531 kb on + strand, within IAI47_00440 at 98.576 kb on + strand, within IAI47_00440 at 98.776 kb on + strand, within IAI47_00440 at 98.776 kb on + strand, within IAI47_00440 at 98.777 kb on - strand, within IAI47_00440 at 98.777 kb on - strand, within IAI47_00440 at 98.777 kb on - strand, within IAI47_00440 at 98.777 kb on - strand, within IAI47_00440 at 98.777 kb on - strand, within IAI47_00440 at 98.821 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.822 kb on + strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.823 kb on - strand at 98.826 kb on + strand at 98.826 kb on + strand at 98.826 kb on + strand at 98.826 kb on + strand at 98.827 kb on - strand at 98.827 kb on - strand at 98.847 kb on + strand at 98.848 kb on - strand at 98.848 kb on - strand at 98.889 kb on - strand at 98.889 kb on - strand at 98.889 kb on - strand at 98.895 kb on + strand at 98.895 kb on + strand at 98.896 kb on - strand at 98.896 kb on - strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.946 kb on + strand at 98.947 kb on - strand at 98.947 kb on - strand at 98.947 kb on - strand at 98.947 kb on - strand at 98.947 kb on - strand at 98.947 kb on - strand at 98.966 kb on + strand at 98.966 kb on + strand at 98.966 kb on + strand at 98.966 kb on + strand at 98.967 kb on - strand at 98.967 kb on - strand at 98.967 kb on - strand at 98.971 kb on + strand at 98.972 kb on - strand at 99.001 kb on + strand at 99.001 kb on + strand at 99.001 kb on + strand at 99.002 kb on - strand at 99.002 kb on - strand at 99.002 kb on - strand at 99.002 kb on - strand at 99.117 kb on + strand at 99.118 kb on - strand at 99.128 kb on + strand at 99.129 kb on - strand at 99.129 kb on - strand at 99.134 kb on + strand at 99.135 kb on - strand at 99.149 kb on + strand at 99.149 kb on + strand at 99.149 kb on + strand at 99.150 kb on - strand at 99.150 kb on - strand at 99.151 kb on + strand at 99.151 kb on + strand at 99.151 kb on + strand at 99.151 kb on + strand at 99.151 kb on + strand at 99.151 kb on + strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.152 kb on - strand at 99.224 kb on + strand, within IAI47_00445 at 99.225 kb on - strand, within IAI47_00445 at 99.248 kb on + strand, within IAI47_00445 at 99.248 kb on + strand, within IAI47_00445 at 99.248 kb on + strand, within IAI47_00445 at 99.248 kb on + strand, within IAI47_00445 at 99.248 kb on + strand, within IAI47_00445 at 99.248 kb on + strand, within IAI47_00445 at 99.249 kb on - strand, within IAI47_00445 at 99.249 kb on - strand, within IAI47_00445 at 99.249 kb on - strand at 99.256 kb on + strand, within IAI47_00445 at 99.257 kb on - strand, within IAI47_00445 at 99.257 kb on - strand, within IAI47_00445 at 99.281 kb on + strand, within IAI47_00445 at 99.282 kb on - strand, within IAI47_00445 at 99.298 kb on + strand, within IAI47_00445 at 99.298 kb on + strand, within IAI47_00445 at 99.298 kb on + strand, within IAI47_00445 at 99.298 kb on + strand, within IAI47_00445 at 99.299 kb on - strand, within IAI47_00445 at 99.299 kb on - strand, within IAI47_00445 at 99.299 kb on - strand, within IAI47_00445 at 99.299 kb on - strand, within IAI47_00445 at 99.335 kb on + strand, within IAI47_00445 at 99.336 kb on - strand, within IAI47_00445 at 99.440 kb on - strand, within IAI47_00445 at 99.442 kb on + strand, within IAI47_00445 at 99.468 kb on + strand, within IAI47_00445 at 99.469 kb on - strand, within IAI47_00445 at 99.608 kb on - strand, within IAI47_00445 at 99.608 kb on - strand, within IAI47_00445 at 99.716 kb on + strand, within IAI47_00445 at 99.716 kb on + strand, within IAI47_00445 at 99.717 kb on - strand, within IAI47_00445 at 99.717 kb on - strand, within IAI47_00445 at 99.723 kb on + strand, within IAI47_00445 at 99.794 kb on - strand, within IAI47_00445 at 99.794 kb on - strand, within IAI47_00445 at 99.794 kb on - strand, within IAI47_00445 at 99.798 kb on + strand, within IAI47_00445 at 99.798 kb on + strand, within IAI47_00445 at 99.798 kb on + strand, within IAI47_00445 at 99.798 kb on + strand, within IAI47_00445 at 99.798 kb on + strand, within IAI47_00445 at 99.799 kb on - strand, within IAI47_00445 at 99.799 kb on - strand, within IAI47_00445 at 99.799 kb on - strand, within IAI47_00445 at 99.799 kb on - strand, within IAI47_00445 at 99.802 kb on + strand, within IAI47_00445 at 99.802 kb on + strand, within IAI47_00445 at 99.802 kb on + strand, within IAI47_00445 at 99.802 kb on + strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.803 kb on - strand, within IAI47_00445 at 99.806 kb on + strand, within IAI47_00445 at 99.807 kb on - strand, within IAI47_00445 at 99.807 kb on - strand, within IAI47_00445 at 99.807 kb on - strand, within IAI47_00445
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 3 remove 97,797 - -0.3 97,797 - -1.3 97,815 - +1.5 97,816 + -0.3 97,816 + +0.0 97,817 - -0.6 97,817 - -0.2 97,817 - -1.3 97,817 - -0.4 97,854 + +1.4 97,854 + +0.0 97,867 - -0.4 97,881 + +0.8 97,882 - -0.2 97,882 - -0.9 97,895 - -0.3 97,915 + +1.8 97,916 - -1.5 97,942 - +0.4 97,949 + -0.1 97,950 - +0.0 97,950 - +0.0 97,975 + +0.0 97,979 + -0.8 97,980 - +0.2 97,980 - -0.1 97,980 - +0.1 97,980 - -1.5 97,980 - -0.5 97,980 - -0.0 97,980 - +0.7 97,980 - -0.2 98,017 + +1.8 98,018 - -1.0 98,018 - -1.5 98,022 + +0.4 98,023 - -0.1 98,023 - +0.5 98,023 - -0.5 98,023 - -0.1 98,023 - +0.1 98,070 - +2.1 98,080 + -0.2 98,081 - -0.8 98,081 - -2.1 98,081 - -1.3 98,081 - +0.2 98,113 - +0.3 98,175 + -0.1 98,175 + +0.7 98,175 + +0.2 98,175 + -1.2 98,175 + +0.2 98,175 + -0.1 98,176 - +1.2 98,176 - -0.2 98,176 - +0.9 98,176 - -1.1 98,176 - +0.8 98,176 - +2.0 98,193 + +0.8 98,194 - +1.2 98,194 - -1.5 98,194 - +2.6 98,211 + -0.8 98,211 + -1.5 98,211 + -0.6 98,211 + +1.6 98,211 + -2.1 98,211 + -1.8 98,212 - +0.8 98,212 - +0.4 98,212 - +0.4 98,212 - +0.5 98,219 + -1.2 98,226 + -0.3 98,226 + -0.6 98,226 + -0.3 98,227 - +0.6 98,227 - -0.1 98,274 + -0.3 98,292 + +0.7 98,292 + -0.8 98,292 + +0.2 98,292 + -0.6 98,292 + +0.2 98,293 - -0.1 98,293 - -0.2 98,294 + -0.2 98,295 - +0.7 98,295 - +2.2 98,321 + -0.2 98,321 + +1.2 98,321 + +0.4 98,321 + -0.1 98,322 - +0.1 98,322 - +1.7 98,322 - +0.5 98,322 - -1.6 98,324 + +1.2 98,324 + +0.2 98,324 + -0.5 98,324 + -0.2 98,324 + +1.3 98,324 + +1.7 98,324 + +0.2 98,324 + -0.8 98,324 + +1.2 98,324 + +1.2 98,325 - +0.8 98,325 - +0.6 98,325 - +1.2 98,325 - +0.4 98,325 - +0.2 98,325 - +1.1 98,325 - +1.2 98,325 - -1.3 98,325 - +0.6 98,325 - -0.6 98,325 - +0.3 98,392 - IAI47_00440 0.13 +0.7 98,394 - IAI47_00440 0.13 +0.1 98,394 - IAI47_00440 0.13 +0.0 98,394 - IAI47_00440 0.13 +1.2 98,426 + IAI47_00440 0.19 +1.2 98,426 + IAI47_00440 0.19 +1.2 98,426 + IAI47_00440 0.19 +3.8 98,427 - IAI47_00440 0.19 -0.2 98,463 - IAI47_00440 0.26 -0.1 98,463 - IAI47_00440 0.26 -0.8 98,463 - IAI47_00440 0.26 +0.1 98,501 + IAI47_00440 0.34 +0.0 98,501 + IAI47_00440 0.34 +2.3 98,502 - IAI47_00440 0.34 +0.1 98,502 - IAI47_00440 0.34 +0.2 98,502 - IAI47_00440 0.34 +0.8 98,502 - IAI47_00440 0.34 +0.7 98,504 + IAI47_00440 0.34 +0.8 98,504 + IAI47_00440 0.34 -0.5 98,504 + IAI47_00440 0.34 +0.5 98,505 - IAI47_00440 0.34 +2.0 98,505 - IAI47_00440 0.34 +0.2 98,531 + IAI47_00440 0.39 +1.0 98,576 + IAI47_00440 0.48 +0.1 98,776 + IAI47_00440 0.86 +1.8 98,776 + IAI47_00440 0.86 +0.1 98,777 - IAI47_00440 0.86 +0.7 98,777 - IAI47_00440 0.86 -1.0 98,777 - IAI47_00440 0.86 +3.0 98,777 - IAI47_00440 0.86 +0.9 98,777 - IAI47_00440 0.86 -0.2 98,821 + +2.8 98,822 + +0.0 98,822 + +0.2 98,822 + +0.0 98,822 + -1.1 98,822 + +0.4 98,822 + -0.2 98,822 + +0.2 98,822 + +0.7 98,822 + +0.2 98,822 + -0.6 98,822 + +1.9 98,822 + +2.9 98,822 + +0.9 98,822 + +1.8 98,823 - +1.0 98,823 - +0.7 98,823 - -0.9 98,823 - -1.2 98,823 - +0.2 98,823 - +0.6 98,823 - +0.7 98,823 - +0.5 98,823 - +0.4 98,823 - -0.1 98,823 - -2.1 98,823 - +0.2 98,823 - +0.6 98,823 - -0.2 98,826 + +0.7 98,826 + +0.2 98,826 + +0.8 98,826 + +0.4 98,827 - -0.1 98,827 - +0.2 98,847 + -1.1 98,848 - -0.4 98,848 - +1.8 98,889 - +0.2 98,889 - +0.2 98,889 - +0.5 98,895 + +0.8 98,895 + +0.8 98,896 - -0.2 98,896 - +0.7 98,946 + -0.6 98,946 + -0.3 98,946 + -0.8 98,946 + -1.0 98,946 + +0.5 98,946 + -0.1 98,946 + +1.8 98,946 + -1.0 98,947 - +0.4 98,947 - +1.2 98,947 - -1.3 98,947 - +1.2 98,947 - +0.2 98,947 - -0.3 98,966 + +0.0 98,966 + +0.2 98,966 + +0.9 98,966 + -0.8 98,967 - +0.2 98,967 - +1.2 98,967 - +1.8 98,971 + -1.2 98,972 - +1.6 99,001 + +0.8 99,001 + +0.3 99,001 + +1.0 99,002 - +0.9 99,002 - -0.8 99,002 - +1.5 99,002 - +0.4 99,117 + +2.2 99,118 - +0.1 99,128 + +0.6 99,129 - +0.2 99,129 - +0.4 99,134 + +0.0 99,135 - +1.0 99,149 + -0.8 99,149 + +0.2 99,149 + +0.2 99,150 - -0.3 99,150 - +2.6 99,151 + +1.1 99,151 + -0.0 99,151 + +2.7 99,151 + -0.1 99,151 + +0.2 99,151 + -0.3 99,152 - +1.2 99,152 - +1.2 99,152 - +0.8 99,152 - +1.7 99,152 - +1.0 99,152 - +0.6 99,152 - +1.0 99,152 - -0.8 99,152 - +1.1 99,224 + IAI47_00445 0.10 +1.7 99,225 - IAI47_00445 0.10 +2.2 99,248 + IAI47_00445 0.12 +0.8 99,248 + IAI47_00445 0.12 +0.6 99,248 + IAI47_00445 0.12 +1.4 99,248 + IAI47_00445 0.12 +1.7 99,248 + IAI47_00445 0.12 +0.0 99,248 + IAI47_00445 0.12 +1.0 99,249 - IAI47_00445 0.12 +0.8 99,249 - IAI47_00445 0.12 +2.2 99,249 - +0.6 99,256 + IAI47_00445 0.13 -0.6 99,257 - IAI47_00445 0.13 +1.2 99,257 - IAI47_00445 0.13 +0.4 99,281 + IAI47_00445 0.14 +2.4 99,282 - IAI47_00445 0.14 +0.0 99,298 + IAI47_00445 0.16 +0.2 99,298 + IAI47_00445 0.16 +0.4 99,298 + IAI47_00445 0.16 -0.2 99,298 + IAI47_00445 0.16 -0.5 99,299 - IAI47_00445 0.16 +1.4 99,299 - IAI47_00445 0.16 +1.6 99,299 - IAI47_00445 0.16 +1.8 99,299 - IAI47_00445 0.16 +1.2 99,335 + IAI47_00445 0.18 +1.2 99,336 - IAI47_00445 0.18 +0.2 99,440 - IAI47_00445 0.26 -0.1 99,442 + IAI47_00445 0.26 +0.7 99,468 + IAI47_00445 0.28 +0.8 99,469 - IAI47_00445 0.28 -0.2 99,608 - IAI47_00445 0.38 +3.4 99,608 - IAI47_00445 0.38 +0.6 99,716 + IAI47_00445 0.46 +0.2 99,716 + IAI47_00445 0.46 +0.2 99,717 - IAI47_00445 0.46 +1.6 99,717 - IAI47_00445 0.46 +1.7 99,723 + IAI47_00445 0.47 +0.6 99,794 - IAI47_00445 0.52 +1.4 99,794 - IAI47_00445 0.52 +0.8 99,794 - IAI47_00445 0.52 -1.8 99,798 + IAI47_00445 0.52 +0.7 99,798 + IAI47_00445 0.52 +0.5 99,798 + IAI47_00445 0.52 +0.6 99,798 + IAI47_00445 0.52 +1.8 99,798 + IAI47_00445 0.52 +0.9 99,799 - IAI47_00445 0.52 -0.2 99,799 - IAI47_00445 0.52 -0.0 99,799 - IAI47_00445 0.52 +0.2 99,799 - IAI47_00445 0.52 -0.3 99,802 + IAI47_00445 0.52 +1.2 99,802 + IAI47_00445 0.52 +1.2 99,802 + IAI47_00445 0.52 +2.9 99,802 + IAI47_00445 0.52 +1.8 99,803 - IAI47_00445 0.52 +1.5 99,803 - IAI47_00445 0.52 +1.4 99,803 - IAI47_00445 0.52 -0.5 99,803 - IAI47_00445 0.52 +0.8 99,803 - IAI47_00445 0.52 +0.7 99,803 - IAI47_00445 0.52 +0.9 99,803 - IAI47_00445 0.52 +1.2 99,806 + IAI47_00445 0.53 +0.7 99,807 - IAI47_00445 0.53 +0.4 99,807 - IAI47_00445 0.53 +1.6 99,807 - IAI47_00445 0.53 +1.6
Or see this region's nucleotide sequence