Strain Fitness in Pantoea sp. MT58 around IAI47_21330

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21325 and IAI47_21330 are separated by 3 nucleotides IAI47_21325: IAI47_21325 - FAD-binding oxidoreductase, at 519,085 to 520,263 _21325 IAI47_21330: IAI47_21330 - aldehyde dehydrogenase family protein, at 520,267 to 521,637 _21330 Position (kb) 520 521 522Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 519.281 kb on + strand, within IAI47_21325at 519.281 kb on + strand, within IAI47_21325at 519.282 kb on - strand, within IAI47_21325at 519.282 kb on - strand, within IAI47_21325at 519.422 kb on - strand, within IAI47_21325at 519.816 kb on + strand, within IAI47_21325at 519.817 kb on - strand, within IAI47_21325at 519.828 kb on + strand, within IAI47_21325at 519.831 kb on - strand, within IAI47_21325at 519.848 kb on + strand, within IAI47_21325at 519.848 kb on + strand, within IAI47_21325at 519.979 kb on - strand, within IAI47_21325at 519.979 kb on - strand, within IAI47_21325at 520.060 kb on + strand, within IAI47_21325at 520.060 kb on + strand, within IAI47_21325at 520.060 kb on + strand, within IAI47_21325at 520.060 kb on + strand, within IAI47_21325at 520.060 kb on + strand, within IAI47_21325at 520.061 kb on - strand, within IAI47_21325at 520.061 kb on - strand, within IAI47_21325at 520.084 kb on + strand, within IAI47_21325at 520.085 kb on - strand, within IAI47_21325at 520.228 kb on - strandat 520.244 kb on - strandat 520.261 kb on + strandat 520.261 kb on + strandat 520.268 kb on + strandat 520.401 kb on + strandat 520.402 kb on - strandat 520.539 kb on + strand, within IAI47_21330at 520.585 kb on - strand, within IAI47_21330at 520.585 kb on - strand, within IAI47_21330at 520.585 kb on - strand, within IAI47_21330at 520.616 kb on + strand, within IAI47_21330at 520.616 kb on + strand, within IAI47_21330at 520.616 kb on + strand, within IAI47_21330at 520.616 kb on + strand, within IAI47_21330at 520.616 kb on + strand, within IAI47_21330at 520.616 kb on + strand, within IAI47_21330at 520.617 kb on - strand, within IAI47_21330at 520.617 kb on - strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.619 kb on + strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.620 kb on - strand, within IAI47_21330at 520.624 kb on - strand, within IAI47_21330at 520.624 kb on - strand, within IAI47_21330at 520.624 kb on - strand, within IAI47_21330at 520.624 kb on - strand, within IAI47_21330at 520.636 kb on + strand, within IAI47_21330at 520.637 kb on - strand, within IAI47_21330at 520.687 kb on - strand, within IAI47_21330at 520.830 kb on + strand, within IAI47_21330at 520.831 kb on - strand, within IAI47_21330at 520.833 kb on + strand, within IAI47_21330at 520.833 kb on + strand, within IAI47_21330at 520.833 kb on + strand, within IAI47_21330at 520.833 kb on + strand, within IAI47_21330at 520.833 kb on + strand, within IAI47_21330at 520.833 kb on + strand, within IAI47_21330at 520.834 kb on - strand, within IAI47_21330at 520.834 kb on - strand, within IAI47_21330at 520.834 kb on - strand, within IAI47_21330at 521.043 kb on + strand, within IAI47_21330at 521.043 kb on + strand, within IAI47_21330at 521.044 kb on - strand, within IAI47_21330at 521.186 kb on + strand, within IAI47_21330at 521.186 kb on + strand, within IAI47_21330at 521.186 kb on + strand, within IAI47_21330at 521.187 kb on - strand, within IAI47_21330at 521.187 kb on - strand, within IAI47_21330at 521.193 kb on + strand, within IAI47_21330at 521.193 kb on + strand, within IAI47_21330at 521.194 kb on - strand, within IAI47_21330at 521.351 kb on + strand, within IAI47_21330at 521.351 kb on + strand, within IAI47_21330at 521.351 kb on + strand, within IAI47_21330at 521.351 kb on + strand, within IAI47_21330at 521.351 kb on + strand, within IAI47_21330at 521.352 kb on - strand, within IAI47_21330at 521.362 kb on + strand, within IAI47_21330at 521.362 kb on + strand, within IAI47_21330at 521.362 kb on + strand, within IAI47_21330at 521.363 kb on - strand, within IAI47_21330at 521.363 kb on - strand, within IAI47_21330at 521.363 kb on - strand, within IAI47_21330at 521.363 kb on - strand, within IAI47_21330at 521.376 kb on + strand, within IAI47_21330at 521.376 kb on + strand, within IAI47_21330at 521.377 kb on - strand, within IAI47_21330at 521.377 kb on - strand, within IAI47_21330at 521.377 kb on - strand, within IAI47_21330at 521.377 kb on - strand, within IAI47_21330at 521.430 kb on + strand, within IAI47_21330at 521.430 kb on + strand, within IAI47_21330at 521.431 kb on - strand, within IAI47_21330at 521.431 kb on - strand, within IAI47_21330at 521.480 kb on - strand, within IAI47_21330at 521.480 kb on - strand, within IAI47_21330at 521.482 kb on + strand, within IAI47_21330at 521.482 kb on + strand, within IAI47_21330at 521.482 kb on + strand, within IAI47_21330at 521.483 kb on - strand, within IAI47_21330at 521.613 kb on + strandat 521.613 kb on + strandat 521.613 kb on + strandat 521.613 kb on + strandat 521.614 kb on - strandat 521.620 kb on + strandat 521.621 kb on - strandat 521.677 kb on + strandat 521.677 kb on + strandat 521.771 kb on + strandat 521.771 kb on + strandat 521.771 kb on + strandat 521.771 kb on + strandat 521.771 kb on + strandat 521.771 kb on + strandat 521.772 kb on - strandat 521.772 kb on - strandat 521.772 kb on - strandat 521.779 kb on + strandat 521.779 kb on + strandat 521.780 kb on - strandat 521.780 kb on - strandat 521.786 kb on + strandat 521.807 kb on + strandat 521.807 kb on + strandat 521.807 kb on + strandat 521.808 kb on - strandat 521.808 kb on - strandat 521.808 kb on - strandat 521.808 kb on - strandat 521.814 kb on + strandat 521.815 kb on - strandat 521.815 kb on - strandat 521.847 kb on + strandat 521.847 kb on + strandat 521.847 kb on + strandat 521.847 kb on + strandat 521.847 kb on + strandat 521.848 kb on - strandat 521.848 kb on - strandat 521.850 kb on - strandat 521.850 kb on - strandat 522.049 kb on + strandat 522.049 kb on + strandat 522.049 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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519,281 + IAI47_21325 0.17 -0.6
519,281 + IAI47_21325 0.17 +0.2
519,282 - IAI47_21325 0.17 -0.9
519,282 - IAI47_21325 0.17 +0.8
519,422 - IAI47_21325 0.29 -0.3
519,816 + IAI47_21325 0.62 +0.7
519,817 - IAI47_21325 0.62 +1.2
519,828 + IAI47_21325 0.63 -0.1
519,831 - IAI47_21325 0.63 -0.2
519,848 + IAI47_21325 0.65 -0.0
519,848 + IAI47_21325 0.65 +1.8
519,979 - IAI47_21325 0.76 +0.4
519,979 - IAI47_21325 0.76 -0.8
520,060 + IAI47_21325 0.83 +0.7
520,060 + IAI47_21325 0.83 -1.3
520,060 + IAI47_21325 0.83 -1.7
520,060 + IAI47_21325 0.83 -0.2
520,060 + IAI47_21325 0.83 -0.6
520,061 - IAI47_21325 0.83 -0.8
520,061 - IAI47_21325 0.83 -0.8
520,084 + IAI47_21325 0.85 -0.8
520,085 - IAI47_21325 0.85 +0.1
520,228 - +0.0
520,244 - -0.8
520,261 + -0.2
520,261 + +0.8
520,268 + +0.6
520,401 + -1.0
520,402 - -0.6
520,539 + IAI47_21330 0.20 -1.8
520,585 - IAI47_21330 0.23 -1.3
520,585 - IAI47_21330 0.23 -2.7
520,585 - IAI47_21330 0.23 -2.3
520,616 + IAI47_21330 0.25 -1.1
520,616 + IAI47_21330 0.25 +0.7
520,616 + IAI47_21330 0.25 -1.3
520,616 + IAI47_21330 0.25 -2.6
520,616 + IAI47_21330 0.25 +0.2
520,616 + IAI47_21330 0.25 -1.1
520,617 - IAI47_21330 0.26 -0.6
520,617 - IAI47_21330 0.26 -2.1
520,619 + IAI47_21330 0.26 +0.2
520,619 + IAI47_21330 0.26 -0.8
520,619 + IAI47_21330 0.26 +1.2
520,619 + IAI47_21330 0.26 -1.8
520,619 + IAI47_21330 0.26 -0.0
520,619 + IAI47_21330 0.26 -2.1
520,619 + IAI47_21330 0.26 -1.3
520,619 + IAI47_21330 0.26 -1.9
520,619 + IAI47_21330 0.26 -1.6
520,619 + IAI47_21330 0.26 -1.1
520,619 + IAI47_21330 0.26 -2.3
520,619 + IAI47_21330 0.26 -1.5
520,620 - IAI47_21330 0.26 -0.2
520,620 - IAI47_21330 0.26 +0.2
520,620 - IAI47_21330 0.26 -2.8
520,620 - IAI47_21330 0.26 -1.1
520,620 - IAI47_21330 0.26 -1.0
520,620 - IAI47_21330 0.26 -1.8
520,620 - IAI47_21330 0.26 -1.2
520,620 - IAI47_21330 0.26 -2.3
520,620 - IAI47_21330 0.26 -1.6
520,620 - IAI47_21330 0.26 -1.0
520,620 - IAI47_21330 0.26 -2.6
520,620 - IAI47_21330 0.26 -4.1
520,620 - IAI47_21330 0.26 -0.1
520,620 - IAI47_21330 0.26 -1.6
520,620 - IAI47_21330 0.26 -0.3
520,620 - IAI47_21330 0.26 -3.5
520,620 - IAI47_21330 0.26 -1.5
520,620 - IAI47_21330 0.26 -2.5
520,620 - IAI47_21330 0.26 -0.4
520,620 - IAI47_21330 0.26 -1.8
520,624 - IAI47_21330 0.26 -0.5
520,624 - IAI47_21330 0.26 +1.2
520,624 - IAI47_21330 0.26 -2.7
520,624 - IAI47_21330 0.26 -3.3
520,636 + IAI47_21330 0.27 -1.2
520,637 - IAI47_21330 0.27 -1.3
520,687 - IAI47_21330 0.31 +0.2
520,830 + IAI47_21330 0.41 -2.3
520,831 - IAI47_21330 0.41 +0.2
520,833 + IAI47_21330 0.41 -1.6
520,833 + IAI47_21330 0.41 -3.2
520,833 + IAI47_21330 0.41 -0.8
520,833 + IAI47_21330 0.41 -0.8
520,833 + IAI47_21330 0.41 -1.0
520,833 + IAI47_21330 0.41 -2.6
520,834 - IAI47_21330 0.41 -1.5
520,834 - IAI47_21330 0.41 -1.3
520,834 - IAI47_21330 0.41 -1.3
521,043 + IAI47_21330 0.57 -0.0
521,043 + IAI47_21330 0.57 -0.8
521,044 - IAI47_21330 0.57 -2.6
521,186 + IAI47_21330 0.67 +1.2
521,186 + IAI47_21330 0.67 -1.2
521,186 + IAI47_21330 0.67 -1.9
521,187 - IAI47_21330 0.67 -1.8
521,187 - IAI47_21330 0.67 -2.3
521,193 + IAI47_21330 0.68 -1.6
521,193 + IAI47_21330 0.68 -1.3
521,194 - IAI47_21330 0.68 +2.2
521,351 + IAI47_21330 0.79 -3.1
521,351 + IAI47_21330 0.79 -1.3
521,351 + IAI47_21330 0.79 -1.3
521,351 + IAI47_21330 0.79 -0.8
521,351 + IAI47_21330 0.79 -0.8
521,352 - IAI47_21330 0.79 -0.2
521,362 + IAI47_21330 0.80 -1.9
521,362 + IAI47_21330 0.80 -2.1
521,362 + IAI47_21330 0.80 -0.8
521,363 - IAI47_21330 0.80 -0.2
521,363 - IAI47_21330 0.80 -2.2
521,363 - IAI47_21330 0.80 -1.0
521,363 - IAI47_21330 0.80 -1.6
521,376 + IAI47_21330 0.81 -1.2
521,376 + IAI47_21330 0.81 -1.1
521,377 - IAI47_21330 0.81 -2.8
521,377 - IAI47_21330 0.81 -0.3
521,377 - IAI47_21330 0.81 -1.6
521,377 - IAI47_21330 0.81 -1.0
521,430 + IAI47_21330 0.85 +0.2
521,430 + IAI47_21330 0.85 -2.1
521,431 - IAI47_21330 0.85 -2.9
521,431 - IAI47_21330 0.85 -1.3
521,480 - IAI47_21330 0.88 -1.8
521,480 - IAI47_21330 0.88 +0.2
521,482 + IAI47_21330 0.89 -1.8
521,482 + IAI47_21330 0.89 -1.1
521,482 + IAI47_21330 0.89 -1.3
521,483 - IAI47_21330 0.89 -0.3
521,613 + -2.1
521,613 + +0.2
521,613 + +0.2
521,613 + -1.5
521,614 - -0.3
521,620 + -1.4
521,621 - -2.5
521,677 + -1.2
521,677 + -0.1
521,771 + +0.4
521,771 + -1.2
521,771 + -0.3
521,771 + +2.4
521,771 + +0.2
521,771 + -0.2
521,772 - -0.4
521,772 - +0.6
521,772 - +0.2
521,779 + -0.1
521,779 + -0.1
521,780 - +0.2
521,780 - -0.3
521,786 + -1.1
521,807 + -0.5
521,807 + -1.1
521,807 + -0.2
521,808 - +1.2
521,808 - -0.2
521,808 - +0.7
521,808 - -0.8
521,814 + -1.1
521,815 - +1.0
521,815 - +0.1
521,847 + -0.0
521,847 + -2.1
521,847 + -1.3
521,847 + -1.5
521,847 + -0.8
521,848 - -1.3
521,848 - -1.3
521,850 - -1.3
521,850 - -2.6
522,049 + -2.8
522,049 + -1.3
522,049 + -2.1

Or see this region's nucleotide sequence