Strain Fitness in Pantoea sp. MT58 around IAI47_20705

Experiment: Ying_Others16 rep A; time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20695 and IAI47_20700 are separated by 9 nucleotidesIAI47_20700 and IAI47_20705 are separated by 2 nucleotidesIAI47_20705 and IAI47_20710 overlap by 17 nucleotides IAI47_20695: IAI47_20695 - HesA/MoeB/ThiF family protein, at 387,875 to 388,843 _20695 IAI47_20700: IAI47_20700 - thiazole synthase, at 388,853 to 389,608 _20700 IAI47_20705: IAI47_20705 - sulfur carrier protein ThiS, at 389,611 to 389,808 _20705 IAI47_20710: IAI47_20710 - FAD-dependent oxidoreductase, at 389,792 to 390,736 _20710 Position (kb) 389 390Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 388.612 kb on + strand, within IAI47_20695at 388.687 kb on - strand, within IAI47_20695at 388.697 kb on - strand, within IAI47_20695at 388.898 kb on - strandat 388.898 kb on - strandat 388.898 kb on - strandat 388.898 kb on - strandat 389.081 kb on - strand, within IAI47_20700at 389.098 kb on + strand, within IAI47_20700at 389.099 kb on - strand, within IAI47_20700at 389.131 kb on + strand, within IAI47_20700at 389.233 kb on + strand, within IAI47_20700at 389.233 kb on + strand, within IAI47_20700at 389.235 kb on + strand, within IAI47_20700at 389.236 kb on - strand, within IAI47_20700at 389.415 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.416 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.450 kb on + strand, within IAI47_20700at 389.500 kb on + strand, within IAI47_20700at 389.500 kb on + strand, within IAI47_20700at 389.556 kb on + strandat 389.567 kb on - strandat 389.601 kb on + strandat 389.612 kb on + strandat 389.613 kb on - strandat 389.676 kb on - strand, within IAI47_20705at 389.793 kb on + strandat 389.794 kb on - strandat 389.881 kb on - strandat 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 389.940 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.006 kb on + strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.007 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.018 kb on - strand, within IAI47_20710at 390.117 kb on + strand, within IAI47_20710at 390.118 kb on - strand, within IAI47_20710at 390.118 kb on - strand, within IAI47_20710at 390.201 kb on - strand, within IAI47_20710at 390.280 kb on + strand, within IAI47_20710at 390.281 kb on + strand, within IAI47_20710at 390.281 kb on + strand, within IAI47_20710at 390.282 kb on - strand, within IAI47_20710at 390.282 kb on - strand, within IAI47_20710at 390.302 kb on + strand, within IAI47_20710at 390.302 kb on + strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.303 kb on - strand, within IAI47_20710at 390.363 kb on + strand, within IAI47_20710at 390.363 kb on + strand, within IAI47_20710at 390.364 kb on - strand, within IAI47_20710at 390.467 kb on - strand, within IAI47_20710at 390.494 kb on - strand, within IAI47_20710at 390.776 kb on + strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.777 kb on - strandat 390.795 kb on + strandat 390.795 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.797 kb on + strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strandat 390.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
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388,612 + IAI47_20695 0.76 +0.2
388,687 - IAI47_20695 0.84 +0.1
388,697 - IAI47_20695 0.85 +1.1
388,898 - +0.1
388,898 - +0.2
388,898 - -0.8
388,898 - -0.3
389,081 - IAI47_20700 0.30 +1.2
389,098 + IAI47_20700 0.32 -0.3
389,099 - IAI47_20700 0.33 -0.1
389,131 + IAI47_20700 0.37 -1.5
389,233 + IAI47_20700 0.50 -1.1
389,233 + IAI47_20700 0.50 +0.8
389,235 + IAI47_20700 0.51 -0.2
389,236 - IAI47_20700 0.51 -1.1
389,415 + IAI47_20700 0.74 -0.3
389,416 + IAI47_20700 0.74 -0.6
389,416 + IAI47_20700 0.74 +0.5
389,416 + IAI47_20700 0.74 +0.2
389,450 + IAI47_20700 0.79 -0.1
389,450 + IAI47_20700 0.79 +0.2
389,450 + IAI47_20700 0.79 +0.2
389,500 + IAI47_20700 0.86 +1.2
389,500 + IAI47_20700 0.86 -1.3
389,556 + -0.8
389,567 - -1.8
389,601 + +1.6
389,612 + +1.2
389,613 - -0.9
389,676 - IAI47_20705 0.33 -1.3
389,793 + +1.0
389,794 - -2.5
389,881 - +1.2
389,940 + IAI47_20710 0.16 +0.6
389,940 + IAI47_20710 0.16 -0.5
389,940 + IAI47_20710 0.16 -0.1
389,940 + IAI47_20710 0.16 -0.8
389,940 + IAI47_20710 0.16 +0.3
390,006 + IAI47_20710 0.23 -0.9
390,006 + IAI47_20710 0.23 +0.1
390,006 + IAI47_20710 0.23 +0.2
390,007 - IAI47_20710 0.23 +2.2
390,007 - IAI47_20710 0.23 -0.6
390,007 - IAI47_20710 0.23 +0.3
390,018 - IAI47_20710 0.24 +1.2
390,018 - IAI47_20710 0.24 +1.8
390,018 - IAI47_20710 0.24 -1.1
390,117 + IAI47_20710 0.34 -0.4
390,118 - IAI47_20710 0.34 -0.8
390,118 - IAI47_20710 0.34 +2.2
390,201 - IAI47_20710 0.43 +0.7
390,280 + IAI47_20710 0.52 -0.8
390,281 + IAI47_20710 0.52 +1.8
390,281 + IAI47_20710 0.52 -0.7
390,282 - IAI47_20710 0.52 +0.0
390,282 - IAI47_20710 0.52 +1.5
390,302 + IAI47_20710 0.54 -2.9
390,302 + IAI47_20710 0.54 +0.6
390,303 - IAI47_20710 0.54 +0.0
390,303 - IAI47_20710 0.54 -0.0
390,303 - IAI47_20710 0.54 +0.2
390,303 - IAI47_20710 0.54 +0.2
390,303 - IAI47_20710 0.54 +0.8
390,363 + IAI47_20710 0.60 +0.2
390,363 + IAI47_20710 0.60 +0.2
390,364 - IAI47_20710 0.61 +1.6
390,467 - IAI47_20710 0.71 +0.2
390,494 - IAI47_20710 0.74 -0.8
390,776 + -0.3
390,777 - -0.3
390,777 - -0.6
390,777 - -0.3
390,777 - +0.1
390,777 - -2.6
390,795 + -0.7
390,795 + +0.7
390,797 + +0.6
390,797 + +1.6
390,797 + +0.6
390,797 + -0.2
390,797 + -0.8
390,797 + -0.1
390,797 + +0.2
390,798 - +0.8
390,798 - -0.0
390,798 - +0.4
390,798 - +0.5
390,798 - +0.2
390,798 - -1.0
390,798 - -0.5

Or see this region's nucleotide sequence