Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20630 and IAI47_20635 are separated by 126 nucleotides IAI47_20635 and IAI47_20640 are separated by 27 nucleotides IAI47_20640 and IAI47_20645 are separated by 165 nucleotides
IAI47_20630: IAI47_20630 - DUF2534 family protein, at 376,028 to 377,758
_20630
IAI47_20635: IAI47_20635 - pirin family protein, at 377,885 to 378,562
_20635
IAI47_20640: IAI47_20640 - hypothetical protein, at 378,590 to 378,817
_20640
IAI47_20645: IAI47_20645 - YtfJ family protein, at 378,983 to 379,513
_20645
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 376.981 kb on + strand, within IAI47_20630 at 376.982 kb on - strand, within IAI47_20630 at 376.982 kb on - strand, within IAI47_20630 at 377.244 kb on + strand, within IAI47_20630 at 377.244 kb on + strand, within IAI47_20630 at 377.245 kb on - strand, within IAI47_20630 at 377.245 kb on - strand, within IAI47_20630 at 377.326 kb on + strand, within IAI47_20630 at 377.357 kb on + strand, within IAI47_20630 at 377.388 kb on + strand, within IAI47_20630 at 377.389 kb on - strand, within IAI47_20630 at 377.468 kb on - strand, within IAI47_20630 at 377.515 kb on + strand, within IAI47_20630 at 377.515 kb on + strand, within IAI47_20630 at 377.529 kb on - strand, within IAI47_20630 at 377.529 kb on - strand, within IAI47_20630 at 377.612 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.644 kb on + strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.645 kb on - strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.648 kb on + strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.649 kb on - strand at 377.650 kb on + strand at 377.651 kb on - strand at 377.651 kb on - strand at 377.651 kb on - strand at 377.651 kb on - strand at 377.651 kb on - strand at 377.651 kb on - strand at 377.721 kb on - strand at 377.721 kb on - strand at 377.756 kb on + strand at 377.756 kb on + strand at 377.756 kb on + strand at 377.757 kb on - strand at 377.757 kb on - strand at 377.757 kb on - strand at 377.782 kb on - strand at 377.782 kb on - strand at 377.785 kb on - strand at 377.794 kb on - strand at 377.794 kb on - strand at 377.845 kb on + strand at 377.845 kb on + strand at 377.845 kb on + strand at 377.846 kb on - strand at 377.846 kb on - strand at 377.846 kb on - strand at 377.858 kb on - strand at 377.869 kb on + strand at 377.869 kb on + strand at 377.870 kb on - strand at 377.870 kb on - strand at 377.873 kb on + strand at 377.874 kb on - strand at 377.880 kb on + strand at 377.880 kb on + strand at 377.880 kb on + strand at 377.880 kb on + strand at 377.880 kb on + strand at 377.880 kb on + strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.881 kb on - strand at 377.924 kb on + strand at 377.925 kb on - strand at 378.056 kb on + strand, within IAI47_20635 at 378.056 kb on + strand, within IAI47_20635 at 378.159 kb on - strand, within IAI47_20635 at 378.179 kb on + strand, within IAI47_20635 at 378.179 kb on + strand at 378.179 kb on + strand, within IAI47_20635 at 378.180 kb on - strand, within IAI47_20635 at 378.268 kb on + strand, within IAI47_20635 at 378.269 kb on - strand, within IAI47_20635 at 378.269 kb on - strand, within IAI47_20635 at 378.269 kb on - strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.341 kb on + strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.342 kb on - strand, within IAI47_20635 at 378.343 kb on + strand, within IAI47_20635 at 378.343 kb on + strand, within IAI47_20635 at 378.343 kb on + strand, within IAI47_20635 at 378.343 kb on + strand, within IAI47_20635 at 378.343 kb on + strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.344 kb on - strand, within IAI47_20635 at 378.347 kb on + strand, within IAI47_20635 at 378.347 kb on + strand, within IAI47_20635 at 378.347 kb on + strand, within IAI47_20635 at 378.348 kb on - strand, within IAI47_20635 at 378.348 kb on - strand, within IAI47_20635 at 378.348 kb on - strand, within IAI47_20635 at 378.348 kb on - strand, within IAI47_20635 at 378.373 kb on + strand, within IAI47_20635 at 378.373 kb on + strand, within IAI47_20635 at 378.374 kb on - strand, within IAI47_20635 at 378.374 kb on - strand, within IAI47_20635 at 378.378 kb on + strand, within IAI47_20635 at 378.378 kb on + strand, within IAI47_20635 at 378.410 kb on + strand, within IAI47_20635 at 378.411 kb on - strand, within IAI47_20635 at 378.411 kb on - strand, within IAI47_20635 at 378.520 kb on + strand at 378.602 kb on - strand at 378.602 kb on - strand at 378.630 kb on + strand, within IAI47_20640 at 378.630 kb on + strand, within IAI47_20640 at 378.630 kb on + strand, within IAI47_20640 at 378.630 kb on + strand, within IAI47_20640 at 378.631 kb on - strand, within IAI47_20640 at 378.631 kb on - strand, within IAI47_20640 at 378.631 kb on - strand, within IAI47_20640 at 378.631 kb on - strand, within IAI47_20640 at 378.775 kb on + strand, within IAI47_20640 at 378.775 kb on + strand, within IAI47_20640 at 378.775 kb on + strand, within IAI47_20640 at 378.775 kb on + strand, within IAI47_20640 at 378.776 kb on - strand, within IAI47_20640 at 378.776 kb on - strand, within IAI47_20640 at 378.776 kb on - strand, within IAI47_20640 at 378.776 kb on - strand, within IAI47_20640 at 378.776 kb on - strand, within IAI47_20640 at 378.777 kb on + strand, within IAI47_20640 at 378.778 kb on - strand, within IAI47_20640 at 378.794 kb on + strand, within IAI47_20640 at 378.795 kb on - strand at 378.811 kb on + strand at 378.812 kb on - strand at 378.831 kb on + strand at 378.867 kb on + strand at 378.868 kb on - strand at 378.892 kb on + strand at 378.892 kb on + strand at 378.893 kb on - strand at 378.893 kb on - strand at 378.901 kb on + strand at 378.904 kb on + strand at 378.904 kb on + strand at 378.904 kb on + strand at 378.905 kb on - strand at 378.905 kb on - strand at 378.905 kb on - strand at 378.927 kb on + strand at 378.927 kb on + strand at 378.927 kb on + strand at 378.927 kb on + strand at 378.927 kb on + strand at 378.927 kb on + strand at 378.928 kb on - strand at 378.928 kb on - strand at 378.928 kb on - strand at 378.928 kb on - strand at 378.936 kb on + strand at 378.936 kb on + strand at 378.937 kb on - strand at 378.937 kb on - strand at 378.940 kb on + strand at 378.940 kb on + strand at 378.940 kb on + strand at 378.941 kb on - strand at 378.941 kb on - strand at 378.941 kb on - strand at 378.988 kb on - strand at 378.988 kb on - strand at 379.055 kb on + strand, within IAI47_20645 at 379.055 kb on + strand, within IAI47_20645 at 379.055 kb on + strand, within IAI47_20645 at 379.055 kb on + strand, within IAI47_20645 at 379.055 kb on + strand, within IAI47_20645 at 379.056 kb on - strand, within IAI47_20645 at 379.056 kb on - strand, within IAI47_20645 at 379.056 kb on - strand, within IAI47_20645 at 379.103 kb on + strand, within IAI47_20645 at 379.104 kb on - strand, within IAI47_20645 at 379.197 kb on + strand, within IAI47_20645 at 379.197 kb on + strand, within IAI47_20645 at 379.197 kb on + strand, within IAI47_20645 at 379.262 kb on - strand, within IAI47_20645 at 379.297 kb on - strand, within IAI47_20645 at 379.303 kb on + strand, within IAI47_20645 at 379.303 kb on + strand, within IAI47_20645 at 379.303 kb on + strand, within IAI47_20645 at 379.303 kb on + strand, within IAI47_20645 at 379.304 kb on - strand, within IAI47_20645 at 379.304 kb on - strand, within IAI47_20645 at 379.304 kb on - strand, within IAI47_20645 at 379.304 kb on - strand, within IAI47_20645 at 379.304 kb on - strand, within IAI47_20645 at 379.349 kb on - strand, within IAI47_20645 at 379.458 kb on + strand, within IAI47_20645 at 379.458 kb on + strand, within IAI47_20645 at 379.458 kb on + strand, within IAI47_20645 at 379.459 kb on - strand, within IAI47_20645 at 379.533 kb on + strand at 379.533 kb on + strand at 379.533 kb on + strand at 379.534 kb on - strand at 379.538 kb on - strand at 379.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 376,981 + IAI47_20630 0.55 +3.7 376,982 - IAI47_20630 0.55 +0.4 376,982 - IAI47_20630 0.55 -1.8 377,244 + IAI47_20630 0.70 +2.6 377,244 + IAI47_20630 0.70 +0.5 377,245 - IAI47_20630 0.70 +0.2 377,245 - IAI47_20630 0.70 -1.0 377,326 + IAI47_20630 0.75 +0.2 377,357 + IAI47_20630 0.77 +0.4 377,388 + IAI47_20630 0.79 -0.4 377,389 - IAI47_20630 0.79 -0.8 377,468 - IAI47_20630 0.83 -0.1 377,515 + IAI47_20630 0.86 +0.7 377,515 + IAI47_20630 0.86 +1.8 377,529 - IAI47_20630 0.87 -1.2 377,529 - IAI47_20630 0.87 +0.5 377,612 + +0.7 377,644 + +0.2 377,644 + +0.4 377,644 + -0.8 377,644 + -1.1 377,644 + -0.2 377,644 + -0.5 377,644 + +0.7 377,644 + -1.2 377,644 + +0.7 377,644 + -0.0 377,644 + +1.2 377,644 + +0.2 377,645 - -0.3 377,645 - -0.6 377,645 - +0.6 377,645 - +1.0 377,645 - +0.2 377,645 - -1.3 377,645 - -3.5 377,645 - +1.8 377,645 - -0.3 377,648 + +1.1 377,648 + +0.7 377,648 + -0.3 377,648 + -0.8 377,648 + +1.2 377,648 + -0.3 377,648 + +2.7 377,648 + -1.2 377,648 + -0.8 377,648 + -0.1 377,648 + +0.8 377,648 + +1.0 377,648 + +3.6 377,648 + -0.9 377,648 + +1.4 377,648 + +1.5 377,649 - +1.0 377,649 - +2.1 377,649 - +1.2 377,649 - -0.4 377,649 - -0.0 377,649 - -0.2 377,649 - -2.1 377,649 - -1.3 377,649 - -1.2 377,649 - +1.6 377,649 - -0.9 377,649 - +0.0 377,649 - -0.5 377,649 - +1.6 377,649 - +0.2 377,649 - -0.2 377,649 - +2.1 377,649 - +0.9 377,650 + -0.8 377,651 - +0.1 377,651 - +1.0 377,651 - -0.2 377,651 - -1.0 377,651 - +0.2 377,651 - +0.1 377,721 - -1.0 377,721 - +0.2 377,756 + -0.3 377,756 + -1.3 377,756 + +1.5 377,757 - -0.3 377,757 - +0.7 377,757 - -0.4 377,782 - -0.8 377,782 - +0.4 377,785 - +0.0 377,794 - -0.2 377,794 - -2.3 377,845 + +0.1 377,845 + -0.2 377,845 + +0.9 377,846 - +0.5 377,846 - -0.1 377,846 - -1.2 377,858 - +0.6 377,869 + -1.1 377,869 + +1.6 377,870 - -0.8 377,870 - +0.1 377,873 + -0.3 377,874 - -0.9 377,880 + +1.7 377,880 + -0.8 377,880 + +1.0 377,880 + -1.0 377,880 + -0.2 377,880 + +0.8 377,881 - +0.0 377,881 - -0.3 377,881 - +0.2 377,881 - -0.6 377,881 - +0.0 377,881 - +1.0 377,881 - +0.6 377,881 - +1.2 377,924 + -1.0 377,925 - -0.2 378,056 + IAI47_20635 0.25 -0.0 378,056 + IAI47_20635 0.25 +0.0 378,159 - IAI47_20635 0.40 +0.6 378,179 + IAI47_20635 0.43 -0.2 378,179 + -0.1 378,179 + IAI47_20635 0.43 -1.3 378,180 - IAI47_20635 0.44 +0.2 378,268 + IAI47_20635 0.56 +1.4 378,269 - IAI47_20635 0.57 -0.5 378,269 - IAI47_20635 0.57 -1.8 378,269 - IAI47_20635 0.57 -0.6 378,341 + IAI47_20635 0.67 +1.7 378,341 + IAI47_20635 0.67 +0.7 378,341 + IAI47_20635 0.67 +1.2 378,341 + IAI47_20635 0.67 -0.1 378,341 + IAI47_20635 0.67 -0.8 378,341 + IAI47_20635 0.67 +0.2 378,341 + IAI47_20635 0.67 -1.3 378,341 + IAI47_20635 0.67 +1.5 378,342 - IAI47_20635 0.67 +1.0 378,342 - IAI47_20635 0.67 +1.2 378,342 - IAI47_20635 0.67 -0.2 378,342 - IAI47_20635 0.67 -0.2 378,342 - IAI47_20635 0.67 +0.6 378,342 - IAI47_20635 0.67 -1.6 378,342 - IAI47_20635 0.67 -0.9 378,342 - IAI47_20635 0.67 -1.3 378,342 - IAI47_20635 0.67 +0.6 378,342 - IAI47_20635 0.67 -0.9 378,342 - IAI47_20635 0.67 -0.4 378,343 + IAI47_20635 0.68 +0.7 378,343 + IAI47_20635 0.68 -1.0 378,343 + IAI47_20635 0.68 -0.8 378,343 + IAI47_20635 0.68 -2.3 378,343 + IAI47_20635 0.68 +0.7 378,344 - IAI47_20635 0.68 -0.8 378,344 - IAI47_20635 0.68 -1.0 378,344 - IAI47_20635 0.68 +0.6 378,344 - IAI47_20635 0.68 +0.4 378,344 - IAI47_20635 0.68 +0.0 378,344 - IAI47_20635 0.68 +0.8 378,344 - IAI47_20635 0.68 +0.8 378,344 - IAI47_20635 0.68 -0.4 378,347 + IAI47_20635 0.68 -0.3 378,347 + IAI47_20635 0.68 -0.5 378,347 + IAI47_20635 0.68 -0.1 378,348 - IAI47_20635 0.68 -2.1 378,348 - IAI47_20635 0.68 +0.1 378,348 - IAI47_20635 0.68 +1.8 378,348 - IAI47_20635 0.68 -0.9 378,373 + IAI47_20635 0.72 +1.8 378,373 + IAI47_20635 0.72 +2.0 378,374 - IAI47_20635 0.72 +0.4 378,374 - IAI47_20635 0.72 -0.2 378,378 + IAI47_20635 0.73 +0.7 378,378 + IAI47_20635 0.73 +0.2 378,410 + IAI47_20635 0.77 -0.8 378,411 - IAI47_20635 0.78 +1.7 378,411 - IAI47_20635 0.78 +0.2 378,520 + -1.8 378,602 - -1.8 378,602 - -0.9 378,630 + IAI47_20640 0.18 -0.1 378,630 + IAI47_20640 0.18 -3.1 378,630 + IAI47_20640 0.18 +1.2 378,630 + IAI47_20640 0.18 -0.8 378,631 - IAI47_20640 0.18 +1.2 378,631 - IAI47_20640 0.18 -1.1 378,631 - IAI47_20640 0.18 -0.2 378,631 - IAI47_20640 0.18 +1.2 378,775 + IAI47_20640 0.81 +0.6 378,775 + IAI47_20640 0.81 +3.0 378,775 + IAI47_20640 0.81 -0.3 378,775 + IAI47_20640 0.81 +0.1 378,776 - IAI47_20640 0.82 -0.8 378,776 - IAI47_20640 0.82 +0.8 378,776 - IAI47_20640 0.82 +0.0 378,776 - IAI47_20640 0.82 +0.2 378,776 - IAI47_20640 0.82 +0.5 378,777 + IAI47_20640 0.82 -0.7 378,778 - IAI47_20640 0.82 -0.3 378,794 + IAI47_20640 0.89 +0.2 378,795 - -0.2 378,811 + -1.1 378,812 - -1.5 378,831 + -0.2 378,867 + -0.1 378,868 - -1.1 378,892 + +0.7 378,892 + +0.3 378,893 - -0.6 378,893 - +1.0 378,901 + +2.9 378,904 + +1.2 378,904 + +1.2 378,904 + -0.1 378,905 - -0.9 378,905 - -0.3 378,905 - -0.2 378,927 + +0.2 378,927 + +0.5 378,927 + -0.1 378,927 + +0.6 378,927 + +0.7 378,927 + +0.8 378,928 - +0.2 378,928 - +1.0 378,928 - +1.2 378,928 - +1.5 378,936 + +0.2 378,936 + +1.0 378,937 - -0.3 378,937 - +1.0 378,940 + +0.2 378,940 + +0.2 378,940 + +0.2 378,941 - +0.1 378,941 - -0.2 378,941 - +0.4 378,988 - -0.2 378,988 - +0.7 379,055 + IAI47_20645 0.14 +0.7 379,055 + IAI47_20645 0.14 -0.8 379,055 + IAI47_20645 0.14 +0.6 379,055 + IAI47_20645 0.14 +0.7 379,055 + IAI47_20645 0.14 +0.4 379,056 - IAI47_20645 0.14 -0.1 379,056 - IAI47_20645 0.14 -0.2 379,056 - IAI47_20645 0.14 -0.3 379,103 + IAI47_20645 0.23 +0.2 379,104 - IAI47_20645 0.23 +0.4 379,197 + IAI47_20645 0.40 +0.6 379,197 + IAI47_20645 0.40 +0.4 379,197 + IAI47_20645 0.40 +1.2 379,262 - IAI47_20645 0.53 +0.4 379,297 - IAI47_20645 0.59 -1.2 379,303 + IAI47_20645 0.60 +0.7 379,303 + IAI47_20645 0.60 -0.5 379,303 + IAI47_20645 0.60 -0.4 379,303 + IAI47_20645 0.60 -0.3 379,304 - IAI47_20645 0.60 +0.9 379,304 - IAI47_20645 0.60 +1.6 379,304 - IAI47_20645 0.60 -0.5 379,304 - IAI47_20645 0.60 +0.8 379,304 - IAI47_20645 0.60 -0.5 379,349 - IAI47_20645 0.69 -0.3 379,458 + IAI47_20645 0.89 -0.6 379,458 + IAI47_20645 0.89 +1.2 379,458 + IAI47_20645 0.89 -0.4 379,459 - IAI47_20645 0.90 +0.8 379,533 + +0.6 379,533 + +0.2 379,533 + -0.1 379,534 - +2.2 379,538 - +0.5 379,538 - -0.1
Or see this region's nucleotide sequence