Strain Fitness in Pantoea sp. MT58 around IAI47_20515

Experiment: Ying_Others16 rep A; time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_20510 and IAI47_20515 are separated by 103 nucleotidesIAI47_20515 and IAI47_20520 are separated by 43 nucleotides IAI47_20510: IAI47_20510 - maltose operon protein MalM, at 350,862 to 351,800 _20510 IAI47_20515: IAI47_20515 - maltoporin, at 351,904 to 353,205 _20515 IAI47_20520: IAI47_20520 - maltose/maltodextrin ABC transporter ATP-binding protein MalK, at 353,249 to 354,358 _20520 Position (kb) 351 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 350.993 kb on + strand, within IAI47_20510at 350.998 kb on + strand, within IAI47_20510at 350.998 kb on + strand, within IAI47_20510at 350.999 kb on - strand, within IAI47_20510at 350.999 kb on - strand, within IAI47_20510at 351.082 kb on + strand, within IAI47_20510at 351.101 kb on + strand, within IAI47_20510at 351.102 kb on - strand, within IAI47_20510at 351.234 kb on - strand, within IAI47_20510at 351.266 kb on - strand, within IAI47_20510at 351.266 kb on - strand, within IAI47_20510at 351.324 kb on + strand, within IAI47_20510at 351.324 kb on + strand, within IAI47_20510at 351.324 kb on + strand, within IAI47_20510at 351.325 kb on - strand, within IAI47_20510at 351.325 kb on - strand, within IAI47_20510at 351.557 kb on - strand, within IAI47_20510at 351.557 kb on - strand, within IAI47_20510at 351.557 kb on - strand, within IAI47_20510at 351.620 kb on + strand, within IAI47_20510at 351.621 kb on - strand, within IAI47_20510at 351.801 kb on + strandat 351.802 kb on - strandat 351.802 kb on - strandat 351.807 kb on + strandat 351.807 kb on + strandat 351.807 kb on + strandat 351.807 kb on + strandat 351.808 kb on - strandat 351.808 kb on - strandat 351.808 kb on - strandat 351.813 kb on - strandat 351.813 kb on - strandat 351.905 kb on + strandat 351.906 kb on - strandat 351.906 kb on - strandat 351.906 kb on - strandat 351.906 kb on - strandat 351.994 kb on - strandat 352.034 kb on + strandat 352.034 kb on + strandat 352.035 kb on - strand, within IAI47_20515at 352.139 kb on + strand, within IAI47_20515at 352.175 kb on - strand, within IAI47_20515at 352.175 kb on - strand, within IAI47_20515at 352.185 kb on - strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.226 kb on + strand, within IAI47_20515at 352.227 kb on - strand, within IAI47_20515at 352.293 kb on - strand, within IAI47_20515at 352.293 kb on - strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.304 kb on + strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.305 kb on - strand, within IAI47_20515at 352.358 kb on + strand, within IAI47_20515at 352.374 kb on + strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.375 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.434 kb on - strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.454 kb on + strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.455 kb on - strand, within IAI47_20515at 352.476 kb on + strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.477 kb on - strand, within IAI47_20515at 352.529 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.556 kb on + strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.557 kb on - strand, within IAI47_20515at 352.657 kb on - strand, within IAI47_20515at 352.722 kb on + strand, within IAI47_20515at 352.770 kb on + strand, within IAI47_20515at 352.771 kb on - strand, within IAI47_20515at 352.778 kb on + strand, within IAI47_20515at 352.779 kb on - strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.781 kb on + strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.782 kb on - strand, within IAI47_20515at 352.814 kb on + strand, within IAI47_20515at 352.814 kb on + strand, within IAI47_20515at 352.881 kb on + strand, within IAI47_20515at 352.938 kb on - strand, within IAI47_20515at 352.958 kb on + strand, within IAI47_20515at 352.958 kb on + strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.959 kb on - strand, within IAI47_20515at 352.997 kb on - strand, within IAI47_20515at 353.012 kb on + strand, within IAI47_20515at 353.013 kb on - strand, within IAI47_20515at 353.039 kb on + strand, within IAI47_20515at 353.040 kb on - strand, within IAI47_20515at 353.040 kb on - strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.043 kb on + strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.044 kb on - strand, within IAI47_20515at 353.125 kb on - strandat 353.200 kb on + strandat 353.201 kb on - strandat 353.232 kb on + strandat 353.251 kb on - strandat 353.269 kb on - strandat 353.380 kb on - strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.524 kb on + strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.525 kb on - strand, within IAI47_20520at 353.592 kb on - strand, within IAI47_20520at 353.660 kb on - strand, within IAI47_20520at 353.688 kb on + strand, within IAI47_20520at 353.694 kb on + strand, within IAI47_20520at 353.793 kb on + strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.794 kb on - strand, within IAI47_20520at 353.819 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.074 kb on - strand, within IAI47_20520at 354.100 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520at 354.109 kb on - strand, within IAI47_20520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3
remove
350,993 + IAI47_20510 0.14 +1.2
350,998 + IAI47_20510 0.14 +2.6
350,998 + IAI47_20510 0.14 -0.9
350,999 - IAI47_20510 0.15 +0.2
350,999 - IAI47_20510 0.15 -0.3
351,082 + IAI47_20510 0.23 -0.8
351,101 + IAI47_20510 0.25 -0.5
351,102 - IAI47_20510 0.26 +2.6
351,234 - IAI47_20510 0.40 -0.8
351,266 - IAI47_20510 0.43 +0.2
351,266 - IAI47_20510 0.43 +1.0
351,324 + IAI47_20510 0.49 +0.4
351,324 + IAI47_20510 0.49 -0.8
351,324 + IAI47_20510 0.49 -0.8
351,325 - IAI47_20510 0.49 +0.2
351,325 - IAI47_20510 0.49 +0.5
351,557 - IAI47_20510 0.74 -0.4
351,557 - IAI47_20510 0.74 +0.2
351,557 - IAI47_20510 0.74 -0.8
351,620 + IAI47_20510 0.81 -0.5
351,621 - IAI47_20510 0.81 +0.2
351,801 + +0.8
351,802 - +0.2
351,802 - +0.2
351,807 + +0.2
351,807 + +1.2
351,807 + +0.7
351,807 + +0.4
351,808 - +1.1
351,808 - +0.7
351,808 - +0.8
351,813 - -1.3
351,813 - -0.8
351,905 + +1.8
351,906 - -0.1
351,906 - -0.8
351,906 - +0.0
351,906 - +0.7
351,994 - +0.2
352,034 + -0.8
352,034 + +0.2
352,035 - IAI47_20515 0.10 -0.3
352,139 + IAI47_20515 0.18 +0.2
352,175 - IAI47_20515 0.21 -0.5
352,175 - IAI47_20515 0.21 +0.5
352,185 - IAI47_20515 0.22 -0.0
352,226 + IAI47_20515 0.25 -0.3
352,226 + IAI47_20515 0.25 +0.1
352,226 + IAI47_20515 0.25 -1.1
352,226 + IAI47_20515 0.25 -0.8
352,227 - IAI47_20515 0.25 +0.8
352,293 - IAI47_20515 0.30 +0.1
352,293 - IAI47_20515 0.30 +0.2
352,304 + IAI47_20515 0.31 -0.0
352,304 + IAI47_20515 0.31 +0.6
352,304 + IAI47_20515 0.31 +1.0
352,304 + IAI47_20515 0.31 +1.0
352,304 + IAI47_20515 0.31 -0.6
352,304 + IAI47_20515 0.31 +0.2
352,304 + IAI47_20515 0.31 -0.9
352,304 + IAI47_20515 0.31 -1.3
352,304 + IAI47_20515 0.31 -0.1
352,305 - IAI47_20515 0.31 +0.6
352,305 - IAI47_20515 0.31 +0.7
352,305 - IAI47_20515 0.31 +0.1
352,305 - IAI47_20515 0.31 -0.3
352,305 - IAI47_20515 0.31 -0.4
352,305 - IAI47_20515 0.31 -1.3
352,358 + IAI47_20515 0.35 -1.2
352,374 + IAI47_20515 0.36 -1.0
352,375 - IAI47_20515 0.36 -0.3
352,375 - IAI47_20515 0.36 +2.1
352,434 - IAI47_20515 0.41 +2.1
352,434 - IAI47_20515 0.41 +0.2
352,434 - IAI47_20515 0.41 +0.5
352,454 + IAI47_20515 0.42 -0.0
352,454 + IAI47_20515 0.42 +2.2
352,455 - IAI47_20515 0.42 +0.8
352,455 - IAI47_20515 0.42 -1.8
352,476 + IAI47_20515 0.44 +0.2
352,477 - IAI47_20515 0.44 -1.1
352,477 - IAI47_20515 0.44 +0.7
352,477 - IAI47_20515 0.44 +0.1
352,529 + IAI47_20515 0.48 +0.7
352,556 + IAI47_20515 0.50 +3.2
352,556 + IAI47_20515 0.50 +0.5
352,557 - IAI47_20515 0.50 -0.2
352,557 - IAI47_20515 0.50 +1.8
352,657 - IAI47_20515 0.58 -0.8
352,722 + IAI47_20515 0.63 -0.2
352,770 + IAI47_20515 0.67 -0.9
352,771 - IAI47_20515 0.67 +0.7
352,778 + IAI47_20515 0.67 -1.0
352,779 - IAI47_20515 0.67 -0.6
352,781 + IAI47_20515 0.67 +0.2
352,781 + IAI47_20515 0.67 +1.0
352,781 + IAI47_20515 0.67 +0.4
352,782 - IAI47_20515 0.67 +0.4
352,782 - IAI47_20515 0.67 -0.3
352,782 - IAI47_20515 0.67 -0.6
352,814 + IAI47_20515 0.70 +0.5
352,814 + IAI47_20515 0.70 +0.1
352,881 + IAI47_20515 0.75 -0.4
352,938 - IAI47_20515 0.79 -0.2
352,958 + IAI47_20515 0.81 -0.8
352,958 + IAI47_20515 0.81 -0.4
352,959 - IAI47_20515 0.81 -0.1
352,959 - IAI47_20515 0.81 +0.2
352,959 - IAI47_20515 0.81 -0.4
352,959 - IAI47_20515 0.81 -0.8
352,997 - IAI47_20515 0.84 +0.2
353,012 + IAI47_20515 0.85 +0.0
353,013 - IAI47_20515 0.85 -0.1
353,039 + IAI47_20515 0.87 +0.1
353,040 - IAI47_20515 0.87 +0.8
353,040 - IAI47_20515 0.87 -1.1
353,043 + IAI47_20515 0.87 -0.3
353,043 + IAI47_20515 0.87 -0.6
353,043 + IAI47_20515 0.87 +0.7
353,043 + IAI47_20515 0.87 +0.1
353,043 + IAI47_20515 0.87 +0.7
353,043 + IAI47_20515 0.87 -1.5
353,043 + IAI47_20515 0.87 +0.8
353,043 + IAI47_20515 0.87 +0.2
353,044 - IAI47_20515 0.88 -0.2
353,044 - IAI47_20515 0.88 -0.8
353,044 - IAI47_20515 0.88 -1.3
353,125 - -0.4
353,200 + -1.7
353,201 - -1.0
353,232 + +0.0
353,251 - -1.3
353,269 - +0.2
353,380 - IAI47_20520 0.12 -3.5
353,524 + IAI47_20520 0.25 +0.0
353,524 + IAI47_20520 0.25 -0.6
353,524 + IAI47_20520 0.25 -0.5
353,524 + IAI47_20520 0.25 -0.8
353,524 + IAI47_20520 0.25 -0.6
353,524 + IAI47_20520 0.25 +1.1
353,525 - IAI47_20520 0.25 -0.2
353,525 - IAI47_20520 0.25 -0.7
353,525 - IAI47_20520 0.25 +1.7
353,525 - IAI47_20520 0.25 -0.4
353,525 - IAI47_20520 0.25 -0.8
353,525 - IAI47_20520 0.25 +0.3
353,525 - IAI47_20520 0.25 +1.2
353,525 - IAI47_20520 0.25 +0.7
353,525 - IAI47_20520 0.25 -1.1
353,525 - IAI47_20520 0.25 -0.9
353,525 - IAI47_20520 0.25 -0.2
353,592 - IAI47_20520 0.31 +0.0
353,660 - IAI47_20520 0.37 +0.2
353,688 + IAI47_20520 0.40 -1.2
353,694 + IAI47_20520 0.40 -0.3
353,793 + IAI47_20520 0.49 -0.3
353,794 - IAI47_20520 0.49 -2.3
353,794 - IAI47_20520 0.49 +0.2
353,819 - IAI47_20520 0.51 -0.5
354,074 - IAI47_20520 0.74 +0.9
354,074 - IAI47_20520 0.74 -0.6
354,074 - IAI47_20520 0.74 +0.8
354,100 - IAI47_20520 0.77 -0.3
354,109 - IAI47_20520 0.77 -0.2
354,109 - IAI47_20520 0.77 -0.2
354,109 - IAI47_20520 0.77 +0.5
354,109 - IAI47_20520 0.77 -0.4

Or see this region's nucleotide sequence