Strain Fitness in Pantoea sp. MT58 around IAI47_19415

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
108,648	+		IAI47_19410	0.12	+0.2
108,677	+		IAI47_19410	0.15	+0.9
108,678	-		IAI47_19410	0.15	+1.9
108,678	-		IAI47_19410	0.15	-0.8
108,678	-		IAI47_19410	0.15	+0.3
108,680	+		IAI47_19410	0.15	-0.3
108,680	+		IAI47_19410	0.15	-0.3
108,680	+		IAI47_19410	0.15	-0.8
108,680	+		IAI47_19410	0.15	+1.6
108,680	+		IAI47_19410	0.15	-1.3
108,681	-		IAI47_19410	0.15	+1.6
108,681	-		IAI47_19410	0.15	-1.2
108,681	-		IAI47_19410	0.15	-0.7
108,681	-		IAI47_19410	0.15	-0.0
108,699	+		IAI47_19410	0.17	+0.4
108,715	+		IAI47_19410	0.18	-1.1
108,715	+		IAI47_19410	0.18	+0.2
108,716	-		IAI47_19410	0.18	+1.2
108,769	+		IAI47_19410	0.23	+1.6
108,770	-		IAI47_19410	0.23	-0.1
108,770	-		IAI47_19410	0.23	-0.3
108,770	-		IAI47_19410	0.23	+1.2
108,866	-		IAI47_19410	0.32	+1.0
108,873	+		IAI47_19410	0.33	-1.5
108,873	+		IAI47_19410	0.33	-0.8
108,874	-		IAI47_19410	0.33	+0.1
108,948	-		IAI47_19410	0.40	+1.2
109,111	-		IAI47_19410	0.54	+1.0
109,111	-		IAI47_19410	0.54	+0.8
109,120	+		IAI47_19410	0.55	-0.8
109,120	+		IAI47_19410	0.55	-0.9
109,151	+		IAI47_19410	0.58	+0.2
109,152	-		IAI47_19410	0.58	+0.2
109,152	-		IAI47_19410	0.58	-0.3
109,163	+		IAI47_19410	0.59	+0.2
109,163	+		IAI47_19410	0.59	-0.0
109,163	+		IAI47_19410	0.59	-0.6
109,164	-		IAI47_19410	0.59	+0.5
109,190	+		IAI47_19410	0.62	-0.5
109,257	-		IAI47_19410	0.68	+0.4
109,373	-		IAI47_19410	0.78	-0.6
109,373	-		IAI47_19410	0.78	-0.8
109,426	-		IAI47_19410	0.83	-0.1
109,426	-		IAI47_19410	0.83	+0.1
109,456	+		IAI47_19410	0.86	+2.2
109,457	-		IAI47_19410	0.86	+1.4
109,457	-		IAI47_19410	0.86	+0.8
109,526	-				+0.5
109,526	-				-1.3
109,526	-				-1.0
109,549	+				+0.2
109,550	-				-1.2
109,564	+				-0.3
109,568	-				+1.2
109,589	+				+2.4
109,665	+				-0.8
109,723	+				+1.2
109,723	+				+0.2
109,723	+				+0.2
109,723	+				+0.2
109,723	+				+0.4
109,723	+				+0.8
109,724	-				+0.4
109,724	-				+1.5
109,724	-				+0.4
109,724	-				+0.5
109,724	-				-1.6
109,726	+				-0.2
109,727	-				-0.0
109,727	-				+1.1
109,746	-				-1.4
109,748	+				-0.8
109,748	+				-0.3
109,748	+				-0.1
109,748	+				+0.6
109,749	-				-2.1
109,749	-				-0.0
109,749	-				-1.0
109,749	-				+0.8
109,749	-				-0.8
109,822	+				+0.1
109,823	-				-0.5
109,823	-				+0.8
109,823	-				-0.2
109,823	-				-0.1
109,873	+		IAI47_19415	0.11	-0.3
109,873	+		IAI47_19415	0.11	+1.0
109,873	+		IAI47_19415	0.11	+1.2
109,940	-		IAI47_19415	0.14	-0.2
109,940	-		IAI47_19415	0.14	+0.8
109,997	+		IAI47_19415	0.17	+1.7
110,029	+		IAI47_19415	0.18	+0.7
110,029	+		IAI47_19415	0.18	-1.1
110,029	+		IAI47_19415	0.18	+1.6
110,029	+		IAI47_19415	0.18	-1.8
110,029	+		IAI47_19415	0.18	+0.6
110,029	+		IAI47_19415	0.18	-1.3
110,029	+		IAI47_19415	0.18	-0.6
110,029	+		IAI47_19415	0.18	-0.3
110,029	+		IAI47_19415	0.18	-0.8
110,030	-		IAI47_19415	0.18	+1.8
110,030	-		IAI47_19415	0.18	-0.3
110,030	-		IAI47_19415	0.18	-3.1
110,030	-		IAI47_19415	0.18	-0.8
110,030	-		IAI47_19415	0.18	+3.1
110,030	-		IAI47_19415	0.18	-0.8
110,035	+		IAI47_19415	0.18	-0.8
110,035	+		IAI47_19415	0.18	+1.0
110,035	+		IAI47_19415	0.18	-0.7
110,035	+		IAI47_19415	0.18	+1.2
110,035	+		IAI47_19415	0.18	-0.5
110,035	+		IAI47_19415	0.18	+1.4
110,035	+		IAI47_19415	0.18	-0.0
110,036	-		IAI47_19415	0.18	-0.8
110,036	-		IAI47_19415	0.18	+0.4
110,036	-		IAI47_19415	0.18	+3.1
110,108	+		IAI47_19415	0.22	+0.1
110,109	-		IAI47_19415	0.22	+0.2
110,109	-		IAI47_19415	0.22	-0.2
110,109	-		IAI47_19415	0.22	+2.2
110,133	-		IAI47_19415	0.23	-0.5
110,133	-		IAI47_19415	0.23	-1.6
110,135	+		IAI47_19415	0.23	-1.3
110,136	-		IAI47_19415	0.23	-1.7
110,136	-		IAI47_19415	0.23	-0.0
110,136	-		IAI47_19415	0.23	+2.2
110,136	-		IAI47_19415	0.23	-0.4
110,308	+		IAI47_19415	0.31	-0.6
110,308	+		IAI47_19415	0.31	+1.2
110,308	+		IAI47_19415	0.31	+0.2
110,309	-		IAI47_19415	0.31	-1.1
110,309	-		IAI47_19415	0.31	+1.2
110,328	-		IAI47_19415	0.32	+0.2
110,335	+		IAI47_19415	0.33	-1.3
110,335	+		IAI47_19415	0.33	+0.8
110,336	-		IAI47_19415	0.33	+1.0
110,336	-		IAI47_19415	0.33	+0.2
110,336	-		IAI47_19415	0.33	+1.2
110,363	+		IAI47_19415	0.34	+0.2
110,363	+		IAI47_19415	0.34	-1.8
110,363	+		IAI47_19415	0.34	-0.9
110,363	+		IAI47_19415	0.34	-0.6
110,364	-		IAI47_19415	0.34	+0.2
110,364	-		IAI47_19415	0.34	+2.2
110,364	-		IAI47_19415	0.34	+1.4
110,425	+		IAI47_19415	0.37	+2.0
110,425	+		IAI47_19415	0.37	+0.7
110,426	-		IAI47_19415	0.37	-0.6
110,426	-		IAI47_19415	0.37	+1.2
110,486	+		IAI47_19415	0.40	-1.0
110,486	+		IAI47_19415	0.40	+1.5
110,491	+		IAI47_19415	0.40	+1.1
110,492	-				-0.3
110,492	-		IAI47_19415	0.40	+0.9
110,505	-		IAI47_19415	0.41	-0.3
110,522	+		IAI47_19415	0.41	-0.6
110,523	-		IAI47_19415	0.41	+0.0
110,526	-		IAI47_19415	0.42	-0.1
110,578	+		IAI47_19415	0.44	-0.4
110,578	+		IAI47_19415	0.44	+0.5
110,578	+		IAI47_19415	0.44	+0.8
110,578	+		IAI47_19415	0.44	+1.4
110,578	+		IAI47_19415	0.44	-0.4
110,579	-		IAI47_19415	0.44	+0.7
110,579	-		IAI47_19415	0.44	-2.3
110,593	+		IAI47_19415	0.45	-0.0
110,594	-		IAI47_19415	0.45	+0.2
110,594	-		IAI47_19415	0.45	+1.1
110,623	+		IAI47_19415	0.46	+0.2
110,624	-		IAI47_19415	0.46	-1.0
110,638	+		IAI47_19415	0.47	-0.8
110,639	-		IAI47_19415	0.47	-0.2
110,639	-		IAI47_19415	0.47	+0.8
110,639	-		IAI47_19415	0.47	+0.1
110,639	-		IAI47_19415	0.47	-0.2
110,656	+		IAI47_19415	0.48	-0.2
110,657	-		IAI47_19415	0.48	-0.5
110,657	-		IAI47_19415	0.48	+0.2
110,724	+		IAI47_19415	0.51	+1.2
110,724	+		IAI47_19415	0.51	-0.2
110,724	+		IAI47_19415	0.51	-1.2
110,724	+		IAI47_19415	0.51	-0.8
110,724	+		IAI47_19415	0.51	-0.3
110,724	+		IAI47_19415	0.51	+0.8
110,725	-		IAI47_19415	0.51	+0.9
110,725	-		IAI47_19415	0.51	+0.2
110,725	-		IAI47_19415	0.51	+2.8
110,725	-		IAI47_19415	0.51	+1.5
110,725	-		IAI47_19415	0.51	-0.8
110,728	+		IAI47_19415	0.51	-0.8
110,728	+		IAI47_19415	0.51	+0.5
110,728	+		IAI47_19415	0.51	-0.4
110,728	+		IAI47_19415	0.51	+0.7
110,728	+		IAI47_19415	0.51	+3.1
110,729	-		IAI47_19415	0.51	-0.0
110,729	-		IAI47_19415	0.51	+1.0
110,729	-		IAI47_19415	0.51	-0.2
110,819	+		IAI47_19415	0.55	-0.4
110,819	+		IAI47_19415	0.55	+0.8
110,820	-		IAI47_19415	0.55	-0.4
110,820	-		IAI47_19415	0.55	-0.1
110,820	-		IAI47_19415	0.55	+0.2
110,820	-		IAI47_19415	0.55	-0.3
110,820	-		IAI47_19415	0.55	-1.4
110,822	+		IAI47_19415	0.56	+0.4
110,822	+		IAI47_19415	0.56	+0.1
110,822	+		IAI47_19415	0.56	+4.1
110,822	+		IAI47_19415	0.56	+0.1
110,822	+		IAI47_19415	0.56	-0.1
110,822	+		IAI47_19415	0.56	-1.1
110,822	+		IAI47_19415	0.56	+0.7
110,822	+		IAI47_19415	0.56	-0.6
110,823	-		IAI47_19415	0.56	-0.2
110,823	-		IAI47_19415	0.56	+1.1
110,823	-		IAI47_19415	0.56	+0.4
110,823	-		IAI47_19415	0.56	-0.8
110,827	+		IAI47_19415	0.56	-0.3
110,828	-		IAI47_19415	0.56	-1.3
110,828	-		IAI47_19415	0.56	+1.3
110,828	-		IAI47_19415	0.56	+1.0
110,828	-		IAI47_19415	0.56	-0.8
110,853	+		IAI47_19415	0.57	+0.2
110,876	+		IAI47_19415	0.58	-0.1
110,890	+		IAI47_19415	0.59	-2.1
110,890	+		IAI47_19415	0.59	+0.0
110,891	-		IAI47_19415	0.59	+1.0
110,891	-		IAI47_19415	0.59	+0.1
110,891	-		IAI47_19415	0.59	+2.6
110,912	+		IAI47_19415	0.60	-1.0
110,912	+		IAI47_19415	0.60	+0.2
110,912	+		IAI47_19415	0.60	-0.8
110,930	+		IAI47_19415	0.61	-1.8
110,930	+		IAI47_19415	0.61	+0.3
110,930	+		IAI47_19415	0.61	+0.0
110,931	-		IAI47_19415	0.61	+1.2
110,936	+		IAI47_19415	0.61	+0.2
110,937	-		IAI47_19415	0.61	+0.6
110,963	+		IAI47_19415	0.62	+0.2
110,964	-		IAI47_19415	0.62	+1.1
110,964	-		IAI47_19415	0.62	-0.8
111,004	+		IAI47_19415	0.64	-1.8
111,004	+		IAI47_19415	0.64	+0.6
111,011	+		IAI47_19415	0.64	-0.1
111,011	+		IAI47_19415	0.64	+0.1
111,011	+		IAI47_19415	0.64	-0.4
111,012	-		IAI47_19415	0.64	+0.0
111,016	+		IAI47_19415	0.65	-0.1
111,017	-		IAI47_19415	0.65	+0.2
111,017	-		IAI47_19415	0.65	-0.3
111,017	-		IAI47_19415	0.65	-0.8
111,023	-		IAI47_19415	0.65	+0.7
111,023	-		IAI47_19415	0.65	-0.1
111,031	+		IAI47_19415	0.65	+0.2
111,031	+		IAI47_19415	0.65	+0.3
111,032	-		IAI47_19415	0.65	-0.8
111,032	-		IAI47_19415	0.65	+1.7
111,032	-		IAI47_19415	0.65	+0.7
111,032	-		IAI47_19415	0.65	+0.2
111,084	+		IAI47_19415	0.68	+0.6
111,084	+		IAI47_19415	0.68	-0.8
111,084	+		IAI47_19415	0.68	-0.6
111,085	-		IAI47_19415	0.68	-0.4
111,085	-		IAI47_19415	0.68	+2.6
111,085	-		IAI47_19415	0.68	-0.4
111,085	-		IAI47_19415	0.68	-0.6
111,085	-		IAI47_19415	0.68	-0.2
111,085	-		IAI47_19415	0.68	-1.8
111,118	+		IAI47_19415	0.69	+1.2
111,119	-		IAI47_19415	0.70	-0.3
111,217	+		IAI47_19415	0.74	+1.1
111,217	+		IAI47_19415	0.74	+0.2
111,218	-		IAI47_19415	0.74	+1.2
111,245	+		IAI47_19415	0.75	+0.6
111,245	+		IAI47_19415	0.75	+0.2
111,245	+		IAI47_19415	0.75	+1.2
111,246	-		IAI47_19415	0.76	-0.1
111,246	-		IAI47_19415	0.76	-0.6
111,246	-		IAI47_19415	0.76	-0.6
111,246	-		IAI47_19415	0.76	+0.2
111,246	-		IAI47_19415	0.76	-0.4
111,246	-		IAI47_19415	0.76	+0.1
111,246	-		IAI47_19415	0.76	+1.5
111,246	-		IAI47_19415	0.76	-0.3
111,247	+		IAI47_19415	0.76	-0.4
111,247	+		IAI47_19415	0.76	-0.8
111,247	+		IAI47_19415	0.76	-2.6
111,247	+		IAI47_19415	0.76	+0.2
111,247	+		IAI47_19415	0.76	+0.2
111,247	+		IAI47_19415	0.76	+0.5
111,248	-		IAI47_19415	0.76	-0.3
111,248	-		IAI47_19415	0.76	+0.4
111,301	+		IAI47_19415	0.78	+0.1
111,301	+		IAI47_19415	0.78	+0.5
111,392	-		IAI47_19415	0.82	-2.6
111,616	+				+3.2
111,617	-				-0.5
111,617	-				+0.2
111,653	+				+2.6
111,695	+				-0.6
111,695	+				-0.2
111,695	+				-1.8
111,695	+				-0.1
111,695	+				+2.3
111,695	+				+1.2
111,695	+				-0.1
111,696	-				-0.4
111,696	-				-0.1
111,696	-				-0.1
111,696	-				-0.8
111,696	-				-0.2
111,781	+				-0.3
111,781	+				-0.8
111,782	-				-1.1
111,800	+				-0.1
111,801	-				-0.3
111,803	+				+0.5
111,803	+				+0.8
111,804	-				+0.1
111,804	-				-0.4
111,855	+				+1.5
111,855	+				+0.2
111,855	+				+0.5
111,855	+				-0.5
111,855	+				-1.2
111,855	+				-0.2
111,856	-				+0.5
111,856	-				+0.0
111,867	+				-0.3
111,867	+				+2.8
111,868	-				-0.4
111,868	-				-1.0
111,868	-				+0.1
111,963	-				-0.8
111,967	+				-0.4
111,996	-				-0.4
112,089	+				-1.3
112,089	+				-0.2
112,090	-				+0.4
112,090	-				+1.2
112,137	-				+1.8
112,137	-				+1.1
112,204	+				-1.3
112,204	+				-1.3
112,205	-				+0.2
112,205	-				+0.4
112,205	-				+0.4
112,214	+				-1.2
112,215	-				-0.2
112,215	-				+0.6
112,215	-				+1.1
112,338	+		IAI47_19420	0.11	+0.2
112,338	+		IAI47_19420	0.11	+1.2
112,338	+		IAI47_19420	0.11	+0.0
112,340	+		IAI47_19420	0.12	-0.3
112,340	+		IAI47_19420	0.12	-1.3
112,341	-		IAI47_19420	0.12	-0.2
112,393	+		IAI47_19420	0.18	-0.2
112,449	-		IAI47_19420	0.24	+0.1
112,479	-		IAI47_19420	0.27	-1.1
112,514	+		IAI47_19420	0.31	+0.5
112,514	+		IAI47_19420	0.31	+1.2
112,514	+		IAI47_19420	0.31	-0.0
112,514	+		IAI47_19420	0.31	-1.3
112,514	+		IAI47_19420	0.31	-0.0
112,514	+		IAI47_19420	0.31	+1.8
112,515	-		IAI47_19420	0.31	-1.1
112,515	-		IAI47_19420	0.31	-1.3
112,515	-		IAI47_19420	0.31	-0.3
112,515	-		IAI47_19420	0.31	+0.0
112,515	-		IAI47_19420	0.31	-1.3
112,590	+		IAI47_19420	0.40	+1.0
112,590	+		IAI47_19420	0.40	-1.8
112,590	+		IAI47_19420	0.40	-0.3
112,591	-		IAI47_19420	0.40	+1.1
112,619	+		IAI47_19420	0.43	-0.4
112,620	-		IAI47_19420	0.43	+0.6
112,677	-		IAI47_19420	0.49	-0.6
112,688	+		IAI47_19420	0.51	-1.5
112,688	+		IAI47_19420	0.51	-0.3
112,688	+		IAI47_19420	0.51	-0.8
112,689	-		IAI47_19420	0.51	-1.3
112,713	+		IAI47_19420	0.54	-1.8
112,713	+		IAI47_19420	0.54	-2.9
112,729	+		IAI47_19420	0.55	-0.1
112,729	+		IAI47_19420	0.55	-0.5
112,730	-		IAI47_19420	0.55	-1.1
112,736	+		IAI47_19420	0.56	+0.2