Experiment: Ying_Others16 rep A; time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19215 and IAI47_19220 are separated by 495 nucleotides IAI47_19220 and IAI47_19225 are separated by 18 nucleotides IAI47_19225 and IAI47_19230 are separated by 24 nucleotides
IAI47_19215: IAI47_19215 - hypothetical protein, at 69,934 to 70,905
_19215
IAI47_19220: IAI47_19220 - PTS galactitol transporter subunit IIA, at 71,401 to 71,850
_19220
IAI47_19225: IAI47_19225 - PTS sugar transporter subunit IIB, at 71,869 to 72,162
_19225
IAI47_19230: IAI47_19230 - PTS galactitol transporter subunit IIC, at 72,187 to 73,440
_19230
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.907 kb on + strand at 70.908 kb on - strand at 70.908 kb on - strand at 70.908 kb on - strand at 70.914 kb on + strand at 70.915 kb on - strand at 70.915 kb on - strand at 70.965 kb on + strand at 71.121 kb on + strand at 71.121 kb on + strand at 71.122 kb on - strand at 71.122 kb on - strand at 71.130 kb on + strand at 71.157 kb on + strand at 71.179 kb on + strand at 71.179 kb on + strand at 71.180 kb on - strand at 71.180 kb on - strand at 71.227 kb on + strand at 71.335 kb on + strand at 71.336 kb on - strand at 71.397 kb on + strand at 71.397 kb on + strand at 71.397 kb on + strand at 71.398 kb on - strand at 71.398 kb on - strand at 71.398 kb on - strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.399 kb on + strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.400 kb on - strand at 71.412 kb on - strand at 71.412 kb on - strand at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.469 kb on + strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.470 kb on - strand, within IAI47_19220 at 71.501 kb on + strand, within IAI47_19220 at 71.501 kb on + strand, within IAI47_19220 at 71.502 kb on - strand, within IAI47_19220 at 71.502 kb on - strand, within IAI47_19220 at 71.502 kb on - strand, within IAI47_19220 at 71.512 kb on + strand, within IAI47_19220 at 71.512 kb on + strand, within IAI47_19220 at 71.512 kb on + strand, within IAI47_19220 at 71.513 kb on - strand, within IAI47_19220 at 71.513 kb on - strand, within IAI47_19220 at 71.545 kb on + strand, within IAI47_19220 at 71.545 kb on + strand, within IAI47_19220 at 71.545 kb on + strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.546 kb on - strand, within IAI47_19220 at 71.556 kb on + strand, within IAI47_19220 at 71.556 kb on + strand, within IAI47_19220 at 71.556 kb on + strand, within IAI47_19220 at 71.557 kb on - strand, within IAI47_19220 at 71.557 kb on - strand, within IAI47_19220 at 71.557 kb on - strand, within IAI47_19220 at 71.573 kb on - strand, within IAI47_19220 at 71.626 kb on + strand, within IAI47_19220 at 71.626 kb on + strand, within IAI47_19220 at 71.626 kb on + strand, within IAI47_19220 at 71.627 kb on - strand, within IAI47_19220 at 71.627 kb on - strand, within IAI47_19220 at 71.761 kb on - strand, within IAI47_19220 at 71.782 kb on + strand, within IAI47_19220 at 71.829 kb on + strand at 71.841 kb on + strand at 71.849 kb on - strand at 71.874 kb on + strand at 71.875 kb on - strand at 71.877 kb on + strand at 71.877 kb on + strand at 71.878 kb on - strand at 71.886 kb on - strand at 71.934 kb on + strand, within IAI47_19225 at 71.935 kb on - strand, within IAI47_19225 at 71.953 kb on + strand, within IAI47_19225 at 71.954 kb on - strand, within IAI47_19225 at 71.954 kb on - strand, within IAI47_19225 at 71.954 kb on - strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.958 kb on + strand, within IAI47_19225 at 71.959 kb on - strand, within IAI47_19225 at 71.976 kb on + strand, within IAI47_19225 at 72.011 kb on + strand, within IAI47_19225 at 72.012 kb on - strand, within IAI47_19225 at 72.033 kb on - strand, within IAI47_19225 at 72.042 kb on + strand, within IAI47_19225 at 72.042 kb on + strand, within IAI47_19225 at 72.043 kb on - strand, within IAI47_19225 at 72.046 kb on + strand, within IAI47_19225 at 72.047 kb on - strand, within IAI47_19225 at 72.047 kb on - strand, within IAI47_19225 at 72.047 kb on - strand, within IAI47_19225 at 72.049 kb on - strand, within IAI47_19225 at 72.049 kb on - strand, within IAI47_19225 at 72.103 kb on - strand, within IAI47_19225 at 72.103 kb on - strand, within IAI47_19225 at 72.111 kb on + strand, within IAI47_19225 at 72.111 kb on + strand, within IAI47_19225 at 72.111 kb on + strand, within IAI47_19225 at 72.112 kb on - strand, within IAI47_19225 at 72.112 kb on - strand, within IAI47_19225 at 72.160 kb on + strand at 72.160 kb on + strand at 72.161 kb on - strand at 72.161 kb on - strand at 72.161 kb on - strand at 72.171 kb on + strand at 72.171 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.206 kb on + strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.207 kb on - strand at 72.218 kb on + strand at 72.218 kb on + strand at 72.219 kb on - strand at 72.219 kb on - strand at 72.219 kb on - strand at 72.219 kb on - strand at 72.261 kb on + strand at 72.304 kb on - strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.312 kb on + strand at 72.314 kb on + strand, within IAI47_19230 at 72.315 kb on - strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.320 kb on + strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.321 kb on - strand, within IAI47_19230 at 72.335 kb on + strand, within IAI47_19230 at 72.336 kb on - strand, within IAI47_19230 at 72.336 kb on - strand, within IAI47_19230 at 72.336 kb on - strand, within IAI47_19230 at 72.342 kb on - strand, within IAI47_19230 at 72.347 kb on + strand, within IAI47_19230 at 72.385 kb on - strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.391 kb on + strand, within IAI47_19230 at 72.394 kb on + strand, within IAI47_19230 at 72.395 kb on - strand, within IAI47_19230 at 72.395 kb on - strand, within IAI47_19230 at 72.395 kb on - strand, within IAI47_19230 at 72.418 kb on - strand, within IAI47_19230 at 72.499 kb on - strand, within IAI47_19230 at 72.565 kb on + strand, within IAI47_19230 at 72.565 kb on + strand, within IAI47_19230 at 72.565 kb on + strand, within IAI47_19230 at 72.566 kb on - strand, within IAI47_19230 at 72.566 kb on - strand, within IAI47_19230 at 72.598 kb on + strand, within IAI47_19230 at 72.654 kb on + strand, within IAI47_19230 at 72.655 kb on - strand, within IAI47_19230 at 72.700 kb on + strand, within IAI47_19230 at 72.700 kb on + strand, within IAI47_19230 at 72.701 kb on - strand, within IAI47_19230 at 72.726 kb on + strand, within IAI47_19230 at 72.727 kb on - strand, within IAI47_19230 at 72.741 kb on + strand, within IAI47_19230 at 72.741 kb on + strand, within IAI47_19230 at 72.741 kb on + strand, within IAI47_19230 at 72.742 kb on - strand, within IAI47_19230 at 72.742 kb on - strand, within IAI47_19230 at 72.742 kb on - strand, within IAI47_19230 at 72.768 kb on + strand, within IAI47_19230 at 72.769 kb on - strand, within IAI47_19230 at 72.769 kb on - strand, within IAI47_19230 at 72.769 kb on - strand, within IAI47_19230 at 72.770 kb on + strand, within IAI47_19230 at 72.770 kb on + strand, within IAI47_19230 at 72.770 kb on + strand, within IAI47_19230 at 72.771 kb on - strand, within IAI47_19230 at 72.777 kb on + strand, within IAI47_19230 at 72.793 kb on - strand, within IAI47_19230 at 72.812 kb on + strand, within IAI47_19230 at 72.813 kb on - strand, within IAI47_19230 at 72.870 kb on + strand, within IAI47_19230 at 72.871 kb on - strand, within IAI47_19230 at 72.925 kb on - strand, within IAI47_19230 at 72.930 kb on - strand, within IAI47_19230 at 73.098 kb on - strand, within IAI47_19230 at 73.131 kb on + strand, within IAI47_19230 at 73.132 kb on - strand, within IAI47_19230
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 3 remove 70,907 + +0.6 70,908 - -0.3 70,908 - -0.0 70,908 - -0.1 70,914 + +2.2 70,915 - -0.8 70,915 - -0.8 70,965 + +0.8 71,121 + +1.4 71,121 + +0.8 71,122 - -0.5 71,122 - +0.2 71,130 + -0.0 71,157 + +0.1 71,179 + -0.2 71,179 + +0.4 71,180 - -0.8 71,180 - -1.0 71,227 + -1.5 71,335 + +0.6 71,336 - -0.2 71,397 + -0.8 71,397 + +1.0 71,397 + +0.7 71,398 - -1.3 71,398 - -0.2 71,398 - +0.2 71,399 + +0.5 71,399 + +0.6 71,399 + +0.8 71,399 + +0.2 71,400 - +0.8 71,400 - +0.8 71,400 - -0.1 71,400 - -1.0 71,412 - -1.0 71,412 - -0.6 71,469 + IAI47_19220 0.15 +1.6 71,469 + IAI47_19220 0.15 -0.8 71,469 + IAI47_19220 0.15 -0.6 71,469 + IAI47_19220 0.15 -0.4 71,469 + IAI47_19220 0.15 -0.8 71,469 + IAI47_19220 0.15 +0.6 71,470 - IAI47_19220 0.15 -1.0 71,470 - IAI47_19220 0.15 +0.2 71,470 - IAI47_19220 0.15 +0.5 71,470 - IAI47_19220 0.15 -0.8 71,501 + IAI47_19220 0.22 -0.1 71,501 + IAI47_19220 0.22 -0.8 71,502 - IAI47_19220 0.22 -1.3 71,502 - IAI47_19220 0.22 +0.5 71,502 - IAI47_19220 0.22 +1.4 71,512 + IAI47_19220 0.25 -0.3 71,512 + IAI47_19220 0.25 +0.5 71,512 + IAI47_19220 0.25 -1.3 71,513 - IAI47_19220 0.25 +0.2 71,513 - IAI47_19220 0.25 -0.2 71,545 + IAI47_19220 0.32 +1.2 71,545 + IAI47_19220 0.32 +0.2 71,545 + IAI47_19220 0.32 -0.9 71,546 - IAI47_19220 0.32 -0.4 71,546 - IAI47_19220 0.32 +0.1 71,546 - IAI47_19220 0.32 -0.2 71,546 - IAI47_19220 0.32 +0.2 71,556 + IAI47_19220 0.34 -2.3 71,556 + IAI47_19220 0.34 -1.1 71,556 + IAI47_19220 0.34 -0.2 71,557 - IAI47_19220 0.35 -1.8 71,557 - IAI47_19220 0.35 -0.3 71,557 - IAI47_19220 0.35 +0.5 71,573 - IAI47_19220 0.38 +0.1 71,626 + IAI47_19220 0.50 +0.0 71,626 + IAI47_19220 0.50 +1.8 71,626 + IAI47_19220 0.50 +0.7 71,627 - IAI47_19220 0.50 -0.7 71,627 - IAI47_19220 0.50 -0.8 71,761 - IAI47_19220 0.80 -0.2 71,782 + IAI47_19220 0.85 +0.1 71,829 + -0.8 71,841 + -0.6 71,849 - +1.6 71,874 + +0.8 71,875 - -0.9 71,877 + -2.8 71,877 + -0.1 71,878 - -0.2 71,886 - -0.6 71,934 + IAI47_19225 0.22 +0.2 71,935 - IAI47_19225 0.22 +1.6 71,953 + IAI47_19225 0.29 -0.1 71,954 - IAI47_19225 0.29 +1.2 71,954 - IAI47_19225 0.29 +0.2 71,954 - IAI47_19225 0.29 -0.2 71,958 + IAI47_19225 0.30 +1.2 71,958 + IAI47_19225 0.30 +2.1 71,958 + IAI47_19225 0.30 -0.5 71,958 + IAI47_19225 0.30 +0.5 71,959 - IAI47_19225 0.31 +0.2 71,976 + IAI47_19225 0.36 -0.2 72,011 + IAI47_19225 0.48 +0.2 72,012 - IAI47_19225 0.49 -0.5 72,033 - IAI47_19225 0.56 +1.6 72,042 + IAI47_19225 0.59 -0.6 72,042 + IAI47_19225 0.59 -0.6 72,043 - IAI47_19225 0.59 -0.7 72,046 + IAI47_19225 0.60 -0.1 72,047 - IAI47_19225 0.61 -0.3 72,047 - IAI47_19225 0.61 +0.2 72,047 - IAI47_19225 0.61 +1.0 72,049 - IAI47_19225 0.61 -0.8 72,049 - IAI47_19225 0.61 -0.3 72,103 - IAI47_19225 0.80 +1.9 72,103 - IAI47_19225 0.80 +0.2 72,111 + IAI47_19225 0.82 -0.1 72,111 + IAI47_19225 0.82 -0.2 72,111 + IAI47_19225 0.82 +0.1 72,112 - IAI47_19225 0.83 -1.3 72,112 - IAI47_19225 0.83 -0.3 72,160 + -0.8 72,160 + -0.5 72,161 - -1.0 72,161 - +1.8 72,161 - +0.6 72,171 + -2.1 72,171 + -0.0 72,204 + +1.1 72,204 + -2.5 72,204 + +1.5 72,204 + -2.1 72,204 + +1.6 72,205 - -0.8 72,205 - -0.8 72,206 + +0.2 72,206 + +0.2 72,206 + -0.5 72,206 + -1.6 72,206 + +0.7 72,207 - +0.0 72,207 - -1.5 72,207 - -0.4 72,207 - -1.0 72,207 - +2.0 72,207 - -0.3 72,218 + +2.7 72,218 + +1.0 72,219 - +1.0 72,219 - +1.4 72,219 - -1.4 72,219 - -1.6 72,261 + -1.8 72,304 - -0.2 72,312 + -2.1 72,312 + -1.0 72,312 + +0.2 72,312 + -0.0 72,312 + -0.3 72,314 + IAI47_19230 0.10 -2.3 72,315 - IAI47_19230 0.10 -0.2 72,320 + IAI47_19230 0.11 -1.0 72,320 + IAI47_19230 0.11 +0.2 72,320 + IAI47_19230 0.11 +1.2 72,320 + IAI47_19230 0.11 -0.0 72,320 + IAI47_19230 0.11 -1.3 72,320 + IAI47_19230 0.11 +1.2 72,320 + IAI47_19230 0.11 -0.2 72,320 + IAI47_19230 0.11 -0.4 72,321 - IAI47_19230 0.11 +0.8 72,321 - IAI47_19230 0.11 -0.4 72,321 - IAI47_19230 0.11 -0.3 72,321 - IAI47_19230 0.11 -0.4 72,335 + IAI47_19230 0.12 +1.5 72,336 - IAI47_19230 0.12 -0.2 72,336 - IAI47_19230 0.12 +0.8 72,336 - IAI47_19230 0.12 +0.7 72,342 - IAI47_19230 0.12 -0.8 72,347 + IAI47_19230 0.13 +0.8 72,385 - IAI47_19230 0.16 -0.3 72,391 + IAI47_19230 0.16 +0.2 72,391 + IAI47_19230 0.16 -0.4 72,391 + IAI47_19230 0.16 +0.2 72,391 + IAI47_19230 0.16 -1.9 72,394 + IAI47_19230 0.17 -0.4 72,395 - IAI47_19230 0.17 -0.1 72,395 - IAI47_19230 0.17 +0.2 72,395 - IAI47_19230 0.17 -0.4 72,418 - IAI47_19230 0.18 -0.2 72,499 - IAI47_19230 0.25 -0.3 72,565 + IAI47_19230 0.30 -0.2 72,565 + IAI47_19230 0.30 +1.6 72,565 + IAI47_19230 0.30 +0.9 72,566 - IAI47_19230 0.30 -0.2 72,566 - IAI47_19230 0.30 +0.1 72,598 + IAI47_19230 0.33 -0.1 72,654 + IAI47_19230 0.37 -0.5 72,655 - IAI47_19230 0.37 -0.3 72,700 + IAI47_19230 0.41 +2.2 72,700 + IAI47_19230 0.41 -0.6 72,701 - IAI47_19230 0.41 -0.3 72,726 + IAI47_19230 0.43 -2.5 72,727 - IAI47_19230 0.43 +0.5 72,741 + IAI47_19230 0.44 +0.7 72,741 + IAI47_19230 0.44 -0.8 72,741 + IAI47_19230 0.44 -0.8 72,742 - IAI47_19230 0.44 -0.4 72,742 - IAI47_19230 0.44 +0.3 72,742 - IAI47_19230 0.44 +0.2 72,768 + IAI47_19230 0.46 -1.2 72,769 - IAI47_19230 0.46 -0.2 72,769 - IAI47_19230 0.46 -0.8 72,769 - IAI47_19230 0.46 -0.6 72,770 + IAI47_19230 0.46 +0.8 72,770 + IAI47_19230 0.46 +1.5 72,770 + IAI47_19230 0.46 -0.6 72,771 - IAI47_19230 0.47 -1.8 72,777 + IAI47_19230 0.47 -1.8 72,793 - IAI47_19230 0.48 +1.8 72,812 + IAI47_19230 0.50 -0.6 72,813 - IAI47_19230 0.50 -0.8 72,870 + IAI47_19230 0.54 +1.3 72,871 - IAI47_19230 0.55 -0.3 72,925 - IAI47_19230 0.59 -0.8 72,930 - IAI47_19230 0.59 -1.0 73,098 - IAI47_19230 0.73 +1.2 73,131 + IAI47_19230 0.75 -0.3 73,132 - IAI47_19230 0.75 -0.9
Or see this region's nucleotide sequence