Strain Fitness in Pantoea sp. MT58 around IAI47_19115

Experiment: Ying_Others16 rep A; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 3
49,204	-		IAI47_19105	0.87	-0.1
49,204	-		IAI47_19105	0.87	-0.8
49,277	+				+0.2
49,278	-				-0.1
49,278	-				+0.8
49,297	-				+0.5
49,297	-				-1.7
49,297	-				+2.2
49,305	+				-0.8
49,305	+				-0.9
49,305	+				+1.1
49,306	-				+1.0
49,306	-				+0.8
49,306	-				-0.5
49,306	-				+0.5
49,306	-				-0.1
49,314	-				+0.8
49,314	-				-0.8
49,330	+				-1.3
49,330	+				+0.1
49,331	-				+0.2
49,333	+				+0.1
49,371	+				-1.2
49,371	+				+0.0
49,395	+				+0.5
49,395	+				+1.8
49,395	+				-0.2
49,396	-				+1.6
49,412	-				-0.5
49,436	+				+0.1
49,441	+				+0.2
49,442	-				+3.1
49,482	+				-0.5
49,506	+				+0.8
49,542	+		IAI47_19110	0.18	-0.3
49,542	+		IAI47_19110	0.18	+2.8
49,542	+		IAI47_19110	0.18	+0.6
49,542	+		IAI47_19110	0.18	+1.7
49,543	-		IAI47_19110	0.18	+0.4
49,543	-		IAI47_19110	0.18	+0.9
49,543	-		IAI47_19110	0.18	-0.4
49,543	-		IAI47_19110	0.18	+0.2
49,543	-		IAI47_19110	0.18	+0.6
49,543	-		IAI47_19110	0.18	-1.6
49,543	-		IAI47_19110	0.18	-0.1
49,543	-		IAI47_19110	0.18	-1.0
49,584	+		IAI47_19110	0.32	-2.3
49,585	-		IAI47_19110	0.32	+0.7
49,585	-		IAI47_19110	0.32	-1.1
49,585	-		IAI47_19110	0.32	-0.8
49,586	+		IAI47_19110	0.33	-0.9
49,586	+		IAI47_19110	0.33	+0.2
49,586	+		IAI47_19110	0.33	-1.6
49,587	-		IAI47_19110	0.33	-1.5
49,587	-		IAI47_19110	0.33	+2.6
49,587	-		IAI47_19110	0.33	-0.5
49,598	-		IAI47_19110	0.37	+0.4
49,598	-		IAI47_19110	0.37	-0.2
49,598	-		IAI47_19110	0.37	+0.5
49,607	-		IAI47_19110	0.40	+0.4
49,625	+		IAI47_19110	0.46	-0.2
49,626	-		IAI47_19110	0.46	+0.7
49,626	-		IAI47_19110	0.46	-0.2
49,665	-		IAI47_19110	0.59	-1.1
49,679	+		IAI47_19110	0.64	+1.1
49,679	+		IAI47_19110	0.64	-1.3
49,679	+		IAI47_19110	0.64	-0.2
49,679	+		IAI47_19110	0.64	-0.3
49,679	+		IAI47_19110	0.64	+0.7
49,679	+		IAI47_19110	0.64	-0.9
49,679	+		IAI47_19110	0.64	+0.2
49,679	+		IAI47_19110	0.64	+1.0
49,679	+		IAI47_19110	0.64	+0.0
49,679	+		IAI47_19110	0.64	+0.5
49,679	+		IAI47_19110	0.64	+1.2
49,680	+		IAI47_19110	0.64	-0.2
49,680	-		IAI47_19110	0.64	-0.1
49,680	-		IAI47_19110	0.64	+1.2
49,680	-		IAI47_19110	0.64	-0.2
49,680	-		IAI47_19110	0.64	-0.8
49,680	-		IAI47_19110	0.64	-0.5
49,680	-		IAI47_19110	0.64	-0.3
49,680	-		IAI47_19110	0.64	-2.6
49,680	-		IAI47_19110	0.64	-0.4
49,680	-		IAI47_19110	0.64	-0.5
49,681	+		IAI47_19110	0.65	-0.9
49,681	+		IAI47_19110	0.65	+0.2
49,681	+		IAI47_19110	0.65	-0.4
49,681	+		IAI47_19110	0.65	+2.2
49,681	+		IAI47_19110	0.65	-0.3
49,681	+		IAI47_19110	0.65	+0.9
49,681	+		IAI47_19110	0.65	+0.2
49,681	+		IAI47_19110	0.65	+0.0
49,681	+		IAI47_19110	0.65	+3.1
49,682	-		IAI47_19110	0.65	-0.4
49,682	-		IAI47_19110	0.65	+1.2
49,682	-		IAI47_19110	0.65	-0.2
49,682	-		IAI47_19110	0.65	-0.6
49,682	-		IAI47_19110	0.65	+0.2
49,682	-		IAI47_19110	0.65	+0.2
49,682	-		IAI47_19110	0.65	+0.1
49,682	-		IAI47_19110	0.65	-0.1
49,682	-		IAI47_19110	0.65	+1.5
49,682	-		IAI47_19110	0.65	-0.4
49,682	-		IAI47_19110	0.65	-0.4
49,683	+		IAI47_19110	0.65	+0.7
49,683	+		IAI47_19110	0.65	+0.9
49,683	+		IAI47_19110	0.65	+0.2
49,683	+		IAI47_19110	0.65	-0.4
49,683	+		IAI47_19110	0.65	-0.5
49,683	+		IAI47_19110	0.65	-0.1
49,683	+		IAI47_19110	0.65	+0.2
49,683	+		IAI47_19110	0.65	-0.2
49,684	-		IAI47_19110	0.66	+0.8
49,684	-		IAI47_19110	0.66	+0.8
49,684	-		IAI47_19110	0.66	+0.0
49,684	-		IAI47_19110	0.66	+0.0
49,684	-		IAI47_19110	0.66	-0.5
49,684	-		IAI47_19110	0.66	-0.0
49,684	-		IAI47_19110	0.66	+0.3
49,684	-		IAI47_19110	0.66	-0.0
49,684	-		IAI47_19110	0.66	+1.2
49,764	+				-0.8
49,764	+				+0.1
49,766	+				+0.2
49,766	+				-1.3
49,766	+				+0.2
49,815	+				+0.8
49,833	+				+0.2
49,833	+				-0.6
49,834	-				+0.8
49,834	-				-0.8
49,834	-				-0.6
49,852	+				-0.8
49,853	-				+1.1
49,853	-				+2.7
49,857	-				+2.5
49,873	+				-1.2
49,874	-				+0.2
49,924	+				+0.8
49,924	+				-0.1
49,924	+				-2.1
49,924	+				+0.6
49,924	+				-1.3
49,925	-				+0.2
49,925	-				-0.6
49,925	-				-0.4
49,925	-				-0.3
49,925	-				-0.8
49,925	-				-1.1
49,925	-				-0.4
49,928	+				+0.2
49,929	-				-0.0
49,941	+				+0.2
49,942	-				-0.3
49,945	+				-1.1
49,946	-				-2.8
49,946	-				+0.2
49,953	-				+0.2
49,968	+				+0.2
50,006	+				+0.1
50,006	+				-1.1
50,006	+				-0.5
50,006	+				-0.4
50,007	-				-0.6
50,007	-				-1.0
50,007	-				-0.0
50,007	-				-0.5
50,027	+				-0.4
50,028	-				-1.2
50,061	+				+4.1
50,061	+				+0.2
50,061	+				-0.8
50,061	+				-1.8
50,062	-				+1.2
50,062	-				-0.8
50,062	-				+0.8
50,062	-				-0.2
50,078	+				+1.0
50,079	-				+2.4
50,079	-				-0.0
50,121	+				+1.5
50,121	+				-0.1
50,122	-				+0.1
50,135	-				+0.2
50,135	-				+0.5
50,184	+				-0.3
50,184	+				-0.2
50,185	-				+1.2
50,185	-				-0.4
50,188	+				-1.6
50,188	+				+1.2
50,189	-				+0.9
50,220	+				+1.2
50,221	-				-0.2
50,274	+				-0.2
50,275	-				+0.2
50,275	-				-0.3
50,314	+		IAI47_19115	0.14	-1.3
50,315	-		IAI47_19115	0.14	-0.2
50,315	-		IAI47_19115	0.14	+1.2
50,342	+		IAI47_19115	0.17	+0.2
50,342	+		IAI47_19115	0.17	+1.2
50,343	-		IAI47_19115	0.17	+0.5
50,357	+		IAI47_19115	0.19	-1.0
50,358	-		IAI47_19115	0.19	-1.1
50,358	-		IAI47_19115	0.19	+1.5
50,374	+		IAI47_19115	0.21	+0.3
50,375	-		IAI47_19115	0.21	+0.6
50,375	-		IAI47_19115	0.21	+0.1
50,391	+		IAI47_19115	0.23	-0.6
50,392	-		IAI47_19115	0.23	+0.1
50,392	-		IAI47_19115	0.23	+0.2
50,403	-		IAI47_19115	0.24	-0.1
50,414	+		IAI47_19115	0.25	+1.2
50,415	-		IAI47_19115	0.25	+1.0
50,614	-		IAI47_19115	0.47	+1.0
50,614	-		IAI47_19115	0.47	-2.3
50,614	-		IAI47_19115	0.47	-1.2
50,614	-		IAI47_19115	0.47	-0.4
50,614	-		IAI47_19115	0.47	-0.4
50,614	-		IAI47_19115	0.47	-0.2
50,646	+		IAI47_19115	0.51	+1.1
50,646	+		IAI47_19115	0.51	+0.2
50,646	+		IAI47_19115	0.51	-0.5
50,646	+		IAI47_19115	0.51	-0.0
50,646	+		IAI47_19115	0.51	-0.4
50,646	+		IAI47_19115	0.51	+0.1
50,646	+		IAI47_19115	0.51	+0.2
50,647	-		IAI47_19115	0.51	-0.9
50,657	+		IAI47_19115	0.52	+0.2
50,657	+		IAI47_19115	0.52	+1.2
50,657	+		IAI47_19115	0.52	-0.6
50,657	+		IAI47_19115	0.52	-0.2
50,658	-		IAI47_19115	0.52	-1.1
50,658	-		IAI47_19115	0.52	-0.6
50,658	-		IAI47_19115	0.52	-1.3
50,661	+		IAI47_19115	0.52	-1.1
50,661	+		IAI47_19115	0.52	-0.9
50,662	-		IAI47_19115	0.52	-0.7
50,662	-		IAI47_19115	0.52	+1.6
50,662	-		IAI47_19115	0.52	-1.0
50,663	+		IAI47_19115	0.53	-1.3
50,664	-		IAI47_19115	0.53	-0.1
50,664	-		IAI47_19115	0.53	-0.0
50,691	-		IAI47_19115	0.56	-1.3
50,699	+		IAI47_19115	0.57	-0.0
50,700	-		IAI47_19115	0.57	-1.3
50,700	-		IAI47_19115	0.57	+0.1
50,719	-		IAI47_19115	0.59	+0.7
50,719	-		IAI47_19115	0.59	+1.9
50,719	-		IAI47_19115	0.59	+0.1
50,777	+		IAI47_19115	0.65	-1.3
50,777	+		IAI47_19115	0.65	+0.2
50,777	+		IAI47_19115	0.65	-0.5
50,778	-		IAI47_19115	0.65	-0.2
50,778	-		IAI47_19115	0.65	+0.8
50,778	-		IAI47_19115	0.65	+0.2
50,778	-		IAI47_19115	0.65	-0.0
50,804	+		IAI47_19115	0.68	+0.2
50,805	-		IAI47_19115	0.68	+0.8
50,817	+		IAI47_19115	0.70	+1.1
50,856	-		IAI47_19115	0.74	+0.8
50,856	-		IAI47_19115	0.74	-0.3
50,856	-		IAI47_19115	0.74	+0.7
50,856	-		IAI47_19115	0.74	-0.1
50,862	+		IAI47_19115	0.75	-1.0
50,877	+		IAI47_19115	0.76	+0.7
50,919	+		IAI47_19115	0.81	-0.3
50,919	+		IAI47_19115	0.81	-0.4
50,919	+		IAI47_19115	0.81	+2.6
50,920	-		IAI47_19115	0.81	-0.6
50,976	+		IAI47_19115	0.87	+0.8
50,976	+		IAI47_19115	0.87	+1.8
50,976	+		IAI47_19115	0.87	+0.2
50,976	+		IAI47_19115	0.87	-1.1
50,977	-		IAI47_19115	0.87	+1.8
51,107	+				+1.2
51,109	+				-0.1
51,109	+				-0.8
51,110	-				-2.2
51,110	-				+0.7
51,110	-				-2.8
51,110	-				-0.8
51,110	-				-0.2
51,118	+				+0.2
51,118	+				-0.3
51,118	+				+0.5
51,118	+				-0.1
51,119	-				-0.9
51,119	-				+0.5
51,119	-				-0.7
51,142	+				-1.2
51,142	+				+1.5
51,142	+				+0.1
51,156	-				+0.1
51,198	+				+2.2
51,211	+				-0.3
51,211	+				+0.9
51,212	-				-0.2
51,212	-				+0.2
51,220	+				+0.6
51,220	+				+0.4
51,220	+				-0.3
51,220	+				-0.1
51,220	+				+0.0
51,221	-				+0.5
51,221	-				-0.1
51,221	-				-0.3
51,221	-				+1.1
51,230	-				-0.1
51,242	+				+0.2
51,243	-				-1.0
51,243	-				-0.8
51,243	-				-0.1
51,248	+		IAI47_19120	0.11	-0.1
51,248	+		IAI47_19120	0.11	+1.8
51,249	-		IAI47_19120	0.11	-1.6
51,249	-		IAI47_19120	0.11	+0.4
51,249	-		IAI47_19120	0.11	-0.8
51,255	+		IAI47_19120	0.12	-0.8
51,255	+		IAI47_19120	0.12	+0.7
51,255	+		IAI47_19120	0.12	-0.3
51,256	-		IAI47_19120	0.12	-0.5
51,256	-		IAI47_19120	0.12	+0.4
51,258	+		IAI47_19120	0.13	-0.1
51,259	-		IAI47_19120	0.13	-0.6
51,271	+		IAI47_19120	0.15	-1.1
51,306	+		IAI47_19120	0.22	-1.6
51,306	+		IAI47_19120	0.22	-0.4
51,383	+		IAI47_19120	0.37	-0.3
51,383	+		IAI47_19120	0.37	+0.2
51,384	-		IAI47_19120	0.37	+0.2
51,389	+		IAI47_19120	0.38	+0.2
51,389	+		IAI47_19120	0.38	-1.3
51,390	-		IAI47_19120	0.38	-0.6
51,390	-		IAI47_19120	0.38	-1.9
51,390	-		IAI47_19120	0.38	+3.4
51,390	-		IAI47_19120	0.38	+0.8
51,447	-		IAI47_19120	0.49	-0.2
51,447	-		IAI47_19120	0.49	+0.8
51,447	-		IAI47_19120	0.49	-0.2
51,447	-		IAI47_19120	0.49	+1.2
51,448	+		IAI47_19120	0.49	-0.5
51,448	+		IAI47_19120	0.49	+0.2
51,448	+		IAI47_19120	0.49	+0.8
51,448	+		IAI47_19120	0.49	+0.4
51,448	+		IAI47_19120	0.49	-0.0
51,448	+		IAI47_19120	0.49	+1.0
51,449	-		IAI47_19120	0.49	+0.7
51,461	+		IAI47_19120	0.51	-0.2
51,481	+		IAI47_19120	0.55	+0.5
51,493	-		IAI47_19120	0.58	-1.1
51,504	+		IAI47_19120	0.60	+1.2
51,505	-		IAI47_19120	0.60	+1.1
51,540	+		IAI47_19120	0.66	+0.5
51,586	+		IAI47_19120	0.75	+0.2
51,586	+		IAI47_19120	0.75	+0.2
51,586	+		IAI47_19120	0.75	+0.4
51,586	+		IAI47_19120	0.75	+0.1
51,586	+		IAI47_19120	0.75	+0.2
51,586	+		IAI47_19120	0.75	-0.1
51,587	-		IAI47_19120	0.75	+0.7
51,587	-		IAI47_19120	0.75	-0.6
51,587	-		IAI47_19120	0.75	+0.1
51,587	-		IAI47_19120	0.75	-0.0
51,634	+		IAI47_19120	0.84	-0.5
51,634	+		IAI47_19120	0.84	+0.8
51,634	+		IAI47_19120	0.84	+0.2
51,634	+		IAI47_19120	0.84	+1.0
51,634	+		IAI47_19120	0.84	-0.3
51,635	-		IAI47_19120	0.85	-0.2
51,635	-		IAI47_19120	0.85	-1.3
51,635	-		IAI47_19120	0.85	+0.8
51,635	-		IAI47_19120	0.85	+1.1
51,635	-		IAI47_19120	0.85	+1.5
51,771	+		IAI47_19125	0.21	-0.5
51,772	-		IAI47_19125	0.22	+1.5
51,772	-		IAI47_19125	0.22	-0.4
51,786	+		IAI47_19125	0.27	+0.8
51,793	+		IAI47_19125	0.30	-0.8
51,793	+		IAI47_19125	0.30	-0.6
51,794	-		IAI47_19125	0.30	-0.2
51,794	-		IAI47_19125	0.30	+0.2
51,794	-		IAI47_19125	0.30	+1.6
51,867	+		IAI47_19125	0.58	+0.7
51,913	+		IAI47_19125	0.75	+0.4
51,913	+		IAI47_19125	0.75	+1.8
51,914	-		IAI47_19125	0.75	+0.2
51,914	-		IAI47_19125	0.75	-0.5
51,914	-		IAI47_19125	0.75	+0.7
51,914	-		IAI47_19125	0.75	+0.7
51,914	-		IAI47_19125	0.75	-0.3
51,942	-		IAI47_19125	0.86	-0.1
52,010	-				-0.3
52,023	-				-0.4
52,056	+				+0.2
52,058	-				-0.4
52,058	-				-0.2
52,058	-				-1.1
52,058	-				-0.0
52,075	+				+0.1
52,075	+				-0.3
52,075	+				-1.3
52,076	-				-1.2
52,076	-				-0.8
52,076	-				+0.2
52,076	-				+0.2
52,076	-				-1.3
52,079	+				-0.4
52,079	+				+0.8
52,079	+				-0.5
52,079	+				-0.8
52,079	+				+0.6
52,079	+				-0.3
52,079	+				-0.6
52,079	+				+0.5
52,080	-				+0.6
52,080	-				+0.2
52,080	-				+1.4
52,080	-				-0.1
52,080	-				-0.3
52,080	-				-0.0
52,080	-				+0.7
52,083	+				-0.1
52,084	-				-0.5